Rw1G024560

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007530
Physical Location & Seq
Reverse (-)
50852485 .. 50855122
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024560.1

Sequence Viewer

Length: 813 bp
ATGGCTGCCTTGTTCGCCAAGTTTTGTTCTCAAGCTGTCATTATTTTCCTTCTCATTATCCCTTCCTTGGTTTCCAAGTCATGTGCTGCATGCATTGTGGTTTACTGGGGCCAAAATGAAGGTGAAGCATCCAATGGCTGCCAAGGCATCAGCAAGGGAGTTCGAAACTGCCAAAACGAAGGGATTAAGGTCCTGATTTCAATTGGTGGTTCCAATGGGAGCTACACACTATCAGATGCAGATGATGCCAGGCGTGTAGCAGACTACATATGGAATAACTTCTTAGGGGGGAAATCAAACTCAAGGCCTTTAGGCGATGCTGTTTTAGATGGTGTGGATTTCGACATTGAGAAGGGCGAACCTCACTATGCTGCACTGGCTAGGAAGTTATCCGAGTATAGCGCAAGTAGCCAAAAAGTGTTATTATCTGCAGCACCACAATGCCCATTTTCTGACCAGAAACTCAATGGTGCATTAACTACAGGCCTATTTGACTATGTTTGGGTTCAATTCTACAACAACCCACAATGTGAATATAGCTCTAGCAATTTTGATGCCTTCAAGAACTCATGGAACCAATGGAACACCATAGACGCTAGATTGTTCTTTGTCGGGCTTCCAGCTTCACATGCCGCTGCTGGCAGTGGAGCAGCTGCTGGCAATGGTTATGTGCCTACAAATGATCTGATACACCAAGTGTTGCCTTTTGTTAAGAAATCTGCCGAGTATGGAGGTATCATGCTCTATGATAGGTTTGAAGATGGTAAGACTGGATACAGTTCTAAAGAATCTAAAGTTAGAAGCAGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

270

Amino Acids

29.16

Weight (kDa)

5.94

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 49 - 195 3.8e-18 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 633
AdeI CACNNNGTG 2 cut(s) 530, 697
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 4 cut(s) 201, 509, 562, 758
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 5 cut(s) 35, 222, 540, 623, 653
AluI AGCT 5 cut(s) 35, 222, 540, 623, 653
AlwNI CAGNNNCTG 1 cut(s) 656
AoxI GGCC 3 cut(s) 109, 305, 484
ApeKI GCWGC 8 cut(s) 5, 86, 138, 371, 431, 635, 650, 653
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 2 cut(s) 109, 190
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 7 cut(s) 73, 125, 358, 443, 622, 640, 662
BccI CCATC 2 cut(s) 323, 755
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 767
BfaI CTAG 3 cut(s) 381, 543, 597
BfmI CTRYAG 2 cut(s) 429, 480
BfuI GTATCC 1 cut(s) 767
BisI GCNGC 9 cut(s) 6, 87, 139, 372, 432, 633, 636, 651, 654
BlsI GCNGC 9 cut(s) 7, 88, 140, 373, 433, 634, 637, 652, 655
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 109, 190
BmiI GGNNCC 3 cut(s) 110, 211, 575
BmrFI CCNGG 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 6 cut(s) 137, 156, 226, 235, 307, 544
BmuI ACTGGG 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 163
BpuEI CTTGAG 2 cut(s) 15, 286
BsaJI CCNNGG 2 cut(s) 66, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 3 cut(s) 110, 381, 775
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 66, 142
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 667
BseNI ACTGG 3 cut(s) 110, 381, 775
BseXI GCAGC 7 cut(s) 73, 125, 358, 443, 622, 640, 662
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 111, 307, 486
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 3 cut(s) 111, 307, 486
Bsp119I TTCGAA 1 cut(s) 163
Bsp143I GATC 1 cut(s) 682
BspACI CCGC 1 cut(s) 633
BspANI GGCC 3 cut(s) 111, 307, 486
BspLI GGNNCC 3 cut(s) 110, 211, 575
BspMAI CTGCAG 1 cut(s) 433
BspT104I TTCGAA 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 3 cut(s) 110, 381, 775
BssECI CCNNGG 2 cut(s) 66, 142
BssMI GATC 1 cut(s) 682
BssT1I CCWWGG 2 cut(s) 66, 142
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 779
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 3 cut(s) 91, 640, 658
BstDEI CTNAG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 1 cut(s) 685
BstMBI GATC 1 cut(s) 682
BstMWI GCNNNNNNNGC 6 cut(s) 14, 144, 245, 377, 408, 629
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 2 cut(s) 93, 632
BstSCI CCNGG 1 cut(s) 248
BstSFI CTRYAG 2 cut(s) 429, 480
BstV1I GCAGC 7 cut(s) 73, 125, 358, 443, 622, 640, 662
BsuI GTATCC 1 cut(s) 767
BsuRI GGCC 3 cut(s) 111, 307, 486
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 2 cut(s) 649, 811
BtsIMutI CAGTG 3 cut(s) 374, 649, 811
Cac8I GCNNGC 3 cut(s) 91, 640, 658
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 109, 190
CseI GACGC 1 cut(s) 602
CviAII CATG 5 cut(s) 81, 90, 570, 629, 739
DdeI CTNAG 1 cut(s) 283
DpnI GATC 1 cut(s) 684
DpnII GATC 1 cut(s) 682
DraIII CACNNNGTG 2 cut(s) 530, 697
Eco130I CCWWGG 2 cut(s) 66, 142
Eco147I AGGCCT 2 cut(s) 307, 486
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 248
EcoT14I CCWWGG 2 cut(s) 66, 142
EcoT22I ATGCAT 1 cut(s) 95
ErhI CCWWGG 2 cut(s) 66, 142
FaeI CATG 5 cut(s) 84, 93, 573, 632, 742
FatI CATG 5 cut(s) 80, 89, 569, 628, 738
FauNDI CATATG 1 cut(s) 269
Fnu4HI GCNGC 9 cut(s) 6, 87, 139, 372, 432, 633, 636, 651, 654
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 9 cut(s) 6, 87, 139, 372, 432, 633, 636, 651, 654
FspBI CTAG 3 cut(s) 381, 543, 597
GlaI GCGC 1 cut(s) 403
GluI GCNGC 9 cut(s) 6, 87, 139, 372, 432, 633, 636, 651, 654
HaeIII GGCC 3 cut(s) 111, 307, 486
HgaI GACGC 1 cut(s) 602
HhaI GCGC 1 cut(s) 404
Hin1II CATG 5 cut(s) 84, 93, 573, 632, 742
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HinfI GANTC 1 cut(s) 788
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 4 cut(s) 235, 394, 454, 687
Hpy188III TCNNGA 2 cut(s) 193, 562
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 6 cut(s) 59, 72, 113, 173, 346, 568
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4V TGCA 6 cut(s) 89, 93, 239, 374, 431, 473
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 144, 245, 377, 408, 629
HpyF3I CTNAG 1 cut(s) 283
Hsp92II CATG 5 cut(s) 84, 93, 573, 632, 742
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 1 cut(s) 682
LmnI GCTCC 2 cut(s) 219, 647
Lsp1109I GCAGC 7 cut(s) 73, 125, 358, 443, 622, 640, 662
LweI GCATC 6 cut(s) 137, 156, 226, 235, 307, 544
MaeI CTAG 3 cut(s) 381, 543, 597
MalI GATC 1 cut(s) 684
MboI GATC 1 cut(s) 682
MboII GAAGA 1 cut(s) 770
MfeI CAATTG 1 cut(s) 201
MluCI AATT 3 cut(s) 201, 509, 547
MnlI CCTC 2 cut(s) 372, 725
Mph1103I ATGCAT 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 4 cut(s) 186, 476, 711, 811
MslI CAYNNNNRTG 1 cut(s) 439
MspA1I CMGCKG 2 cut(s) 635, 653
MspR9I CCNGG 1 cut(s) 250
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 6 cut(s) 14, 144, 245, 377, 408, 629
NdeI CATATG 1 cut(s) 269
NdeII GATC 1 cut(s) 682
NlaIII CATG 5 cut(s) 84, 93, 573, 632, 742
NlaIV GGNNCC 3 cut(s) 110, 211, 575
NmeAIII GCCGAG 1 cut(s) 748
NsiI ATGCAT 1 cut(s) 95
NspI RCATGY 2 cut(s) 93, 632
NspV TTCGAA 1 cut(s) 163
PaeI GCATGC 1 cut(s) 93
PceI AGGCCT 2 cut(s) 307, 486
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 788
PkrI GCNGC 9 cut(s) 7, 88, 140, 373, 433, 634, 637, 652, 655
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 3 cut(s) 110, 211, 575
PspPI GGNCC 2 cut(s) 109, 190
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 653
RseI CAYNNNNRTG 1 cut(s) 439
SaqAI TTAA 4 cut(s) 186, 476, 711, 811
SatI GCNGC 9 cut(s) 6, 87, 139, 372, 432, 633, 636, 651, 654
Sau3AI GATC 1 cut(s) 682
Sau96I GGNCC 2 cut(s) 109, 190
ScrFI CCNGG 1 cut(s) 250
SfaNI GCATC 6 cut(s) 137, 156, 226, 235, 307, 544
SfcI CTRYAG 2 cut(s) 429, 480
SfuI TTCGAA 1 cut(s) 163
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 2 cut(s) 30, 301
SmoI CTYRAG 2 cut(s) 30, 301
SphI GCATGC 1 cut(s) 93
Sse9I AATT 3 cut(s) 201, 509, 547
SseBI AGGCCT 2 cut(s) 307, 486
SsiI CCGC 1 cut(s) 633
SspMI CTAG 3 cut(s) 381, 543, 597
StuI AGGCCT 2 cut(s) 307, 486
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 2 cut(s) 66, 142
TaaI ACNGT 1 cut(s) 779
TaqI TCGA 2 cut(s) 163, 342
TasI AATT 3 cut(s) 201, 509, 547
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 788
Tru1I TTAA 4 cut(s) 186, 476, 711, 811
Tru9I TTAA 4 cut(s) 186, 476, 711, 811
TscAI CASTG 3 cut(s) 381, 649, 811
TseI GCWGC 8 cut(s) 5, 86, 138, 371, 431, 635, 650, 653
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 3 cut(s) 381, 649, 811
VpaK11BI GGWCC 1 cut(s) 190
XceI RCATGY 2 cut(s) 93, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 3 cut(s) 381, 543, 597
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.