Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007530

Physical Location & Seq

Genomic Coordinates Reverse (-)

22435808 .. 22436865

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G181500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTGCCTTGTTCACTAAGTTTTTTTCTCAAGCTTTCACTATCTTCCTAATGATTCTCCCAGCCCTGTTTTCCAAAACCAATGCCGGAGTCATTGTGGTTTATTGGGGTCAAAATGCTGGTGAGGGCTCACTCACAAACACATGTAACACCGGAAAATATCGAGTCGTAAACATAGGATTTCTCTCAAAATTTGGCAATGGCCAAAGACCTCAAATCAACTTAGCTGGCCACTGTAACCCAGCATCAAATGGCTGCCAAGGAGTGAGGGCTGGCATCAAAAACTGCCAAAGAAAAGGCATTAAGGTCCTGCTTTCGATCGGCGGTGGCGCAGGGAACTATGGACTGTCATCTGATGCTGATGCTAACAGTGTAGCAGTCTACCTATGGAACAACTTCTTAGGGGGCCAATCAAACTCAAGGCCTCTAGGCAGCGCCGTTTTGGACGGCATAGATTTCAACATCGAGAAAGGTGGACCTCACTATGCTGCACTTGCTAGGAGGTTGTCTGACTACAGCAAAAGAGGCAAAAAAGTGTACTTAAGTGCAGCACCACAATGCCCATTTCCTGACCAGTATCTCAATGGTGCTCTGTCCACTGGCCTATTCGACTATGTTTGGGTCCAATTCTACAACAACCCTCAGTGTCAATTTACCACCAGCAACCCCAATGCCTTCAGGGACTCATGGAACAAATGGACCTCCATAAAAGCCGGCCAGTTCTTCGTTGGGCTTCCGGCTTCCCGTCAAGCTGCTGGCAGTGGCTTTGTGAATCCAAATGATCTGAAAAACCAAGTGTTTCCTTTTGTTAAGGGATCTCCCAAGTATGGAGGTGTCATGCTCTATGATAAGTTCAACGATGACAGGAGTGGCTATAGTTCTCAAATTCGAGGCAGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

301

Amino Acids

32.47

Weight (kDa)

9.64

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15680
prunus_persica	Prupe.2G181400_v2.0.a1 Prupe.2G181500_v2.0.a1 Prupe.2G181600_v2.0.a1
pyrus_communis	pycom07g12500 pycom07g12560 pycom07g12610 pycom13g15500 pycom15g35750
rosa_chinensis	RchiOBHm_Chr1g0358401 RchiOBHm_Chr1g0358411
rosa_laevigata	RLG00000027962 RLG00000027963
rosa_multiflora	Rmu_sc0000147.1_g000093 Rmu_sc0002144.1_g000033
rosa_roxburghii	Rroxscaffold_4G00297990
rosa_rugosa	Rorug01G0261500
rosa_samantha	Rh1AG275800 Rh1AG276100 Rh1BG242400 Rh1BG242600 Rh1CG259000 Rh1CG259600
rosa_wichuraiana	Rw1G024540 Rw1G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	823
AcoI	YGGCCR	3 cut(s)	202, 229, 715
AcsI	RAATTY	2 cut(s)	191, 885
AcuI	CTGAAG	1 cut(s)	661
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	827
AflII	CTTAAG	1 cut(s)	541
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	460, 856
AluBI	AGCT	3 cut(s)	35, 227, 752
AluI	AGCT	3 cut(s)	35, 227, 752
Alw21I	GWGCWC	1 cut(s)	592
AlwI	GGATC	1 cut(s)	823
AoxI	GGCC	6 cut(s)	202, 229, 406, 422, 601, 715
ApeKI	GCWGC	6 cut(s)	5, 255, 432, 488, 548, 752
ApoI	RAATTY	2 cut(s)	191, 885
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	332, 437
AspS9I	GGNCC	5 cut(s)	307, 406, 476, 622, 699
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	4 cut(s)	307, 476, 622, 699
BalI	TGGCCA	2 cut(s)	204, 231
BanII	GRGCYC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	5 cut(s)	242, 444, 475, 560, 739
BceAI	ACGGC	2 cut(s)	422, 463
BfaI	CTAG	2 cut(s)	428, 498
BfmI	CTRYAG	2 cut(s)	514, 874
BfoI	RGCGCY	1 cut(s)	438
BfrI	CTTAAG	1 cut(s)	541
BisI	GCNGC	6 cut(s)	6, 256, 433, 489, 549, 753
BlsI	GCNGC	6 cut(s)	7, 257, 434, 490, 550, 754
Bme18I	GGWCC	4 cut(s)	307, 476, 622, 699
BmgT120I	GGNCC	5 cut(s)	307, 406, 476, 622, 699
BmiI	GGNNCC	2 cut(s)	407, 623
BmsI	GCATC	4 cut(s)	254, 285, 346, 352
BpuEI	CTTGAG	2 cut(s)	15, 403
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	3 cut(s)	574, 604, 718
Bse3DI	GCAATG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	3 cut(s)	574, 604, 718
BseXI	GCAGC	5 cut(s)	242, 444, 475, 560, 739
BseYI	CCCAGC	2 cut(s)	61, 241
BsgI	GTGCAG	2 cut(s)	474, 567
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	6 cut(s)	204, 231, 408, 424, 603, 717
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	4 cut(s)	87, 153, 714, 737
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	6 cut(s)	204, 231, 408, 424, 603, 717
Bsp1286I	GDGCHC	2 cut(s)	131, 592
Bsp143I	GATC	3 cut(s)	318, 781, 815
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	6 cut(s)	204, 231, 408, 424, 603, 717
BspCNI	CTCAG	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	407, 623
BspPI	GGATC	1 cut(s)	823
BspTI	CTTAAG	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	3 cut(s)	574, 604, 718
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	318, 781, 815
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	236, 348, 371
BstAFI	CTTAAG	1 cut(s)	541
BstC8I	GCNNGC	4 cut(s)	229, 274, 715, 757
BstDEI	CTNAG	4 cut(s)	18, 223, 400, 642
BstH2I	RGCGCY	1 cut(s)	438
BstHHI	GCGC	2 cut(s)	332, 437
BstKTI	GATC	3 cut(s)	321, 784, 818
BstMBI	GATC	3 cut(s)	318, 781, 815
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 525
BstNSI	RCATGY	1 cut(s)	147
BstSFI	CTRYAG	2 cut(s)	514, 874
BstV1I	GCAGC	5 cut(s)	242, 444, 475, 560, 739
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
BsuRI	GGCC	6 cut(s)	204, 231, 408, 424, 603, 717
BtsI	GCAGTG	2 cut(s)	766, 901
BtsIMutI	CAGTG	6 cut(s)	232, 376, 597, 650, 766, 901
Cac8I	GCNNGC	4 cut(s)	229, 274, 715, 757
CfoI	GCGC	2 cut(s)	332, 437
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	5 cut(s)	307, 406, 476, 622, 699
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	3 cut(s)	144, 687, 838
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	4 cut(s)	18, 223, 400, 642
DpnI	GATC	3 cut(s)	320, 783, 817
DpnII	GATC	3 cut(s)	318, 781, 815
EaeI	YGGCCR	3 cut(s)	202, 229, 715
Eco130I	CCWWGG	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	4 cut(s)	307, 476, 622, 699
Eco57I	CTGAAG	1 cut(s)	661
EcoO109I	RGGNCCY	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	147, 690, 841
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	3 cut(s)	143, 686, 837
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	6 cut(s)	6, 256, 433, 489, 549, 753
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	6, 256, 433, 489, 549, 753
FspBI	CTAG	2 cut(s)	428, 498
GlaI	GCGC	2 cut(s)	331, 436
GluI	GCNGC	6 cut(s)	6, 256, 433, 489, 549, 753
GsaI	CCCAGC	2 cut(s)	65, 245
HaeII	RGCGCY	1 cut(s)	438
HaeIII	GGCC	6 cut(s)	204, 231, 408, 424, 603, 717
HapII	CCGG	4 cut(s)	87, 153, 714, 737
HhaI	GCGC	2 cut(s)	332, 437
Hin1II	CATG	3 cut(s)	147, 690, 841
Hin6I	GCGC	2 cut(s)	330, 435
HinP1I	GCGC	2 cut(s)	330, 435
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	5 cut(s)	55, 90, 165, 683, 772
HpaII	CCGG	4 cut(s)	87, 153, 714, 737
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	6 cut(s)	15, 172, 382, 476, 538, 597
Hpy188I	TCNGA	3 cut(s)	355, 511, 786
Hpy188III	TCNNGA	2 cut(s)	466, 569
Hpy8I	GTNNAC	6 cut(s)	15, 172, 382, 476, 538, 597
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	3 cut(s)	236, 348, 371
HpyCH4V	TGCA	2 cut(s)	491, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 525
HpyF3I	CTNAG	4 cut(s)	18, 223, 400, 642
Hsp92II	CATG	3 cut(s)	147, 690, 841
HspAI	GCGC	2 cut(s)	330, 435
KroI	GCCGGC	1 cut(s)	713
KroNI	GCCGGC	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	318, 781, 815
Lsp1109I	GCAGC	5 cut(s)	242, 444, 475, 560, 739
LweI	GCATC	4 cut(s)	254, 285, 346, 352
MaeI	CTAG	2 cut(s)	428, 498
MaeIII	GTNAC	2 cut(s)	146, 236
MalI	GATC	3 cut(s)	320, 783, 817
MboI	GATC	3 cut(s)	318, 781, 815
MboII	GAAGA	2 cut(s)	37, 715
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	2 cut(s)	131, 592
MlsI	TGGCCA	2 cut(s)	204, 231
MluCI	AATT	4 cut(s)	191, 626, 650, 885
MluNI	TGGCCA	2 cut(s)	204, 231
MlyI	GAGTC	3 cut(s)	99, 174, 677
Mox20I	TGGCCA	2 cut(s)	204, 231
MroNI	GCCGGC	1 cut(s)	713
MroXI	GAANNNNTTC	1 cut(s)	395
MscI	TGGCCA	2 cut(s)	204, 231
MseI	TTAA	3 cut(s)	303, 542, 810
MslI	CAYNNNNRTG	1 cut(s)	556
Msp20I	TGGCCA	2 cut(s)	204, 231
MspCI	CTTAAG	1 cut(s)	541
MspI	CCGG	4 cut(s)	87, 153, 714, 737
MwoI	GCNNNNNNNGC	2 cut(s)	494, 525
NaeI	GCCGGC	1 cut(s)	715
NdeII	GATC	3 cut(s)	318, 781, 815
NgoMIV	GCCGGC	1 cut(s)	713
NlaIII	CATG	3 cut(s)	147, 690, 841
NlaIV	GGNNCC	2 cut(s)	407, 623
NspI	RCATGY	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	424
PciI	ACATGT	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	715
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	55, 772
PkrI	GCNGC	6 cut(s)	7, 257, 434, 490, 550, 754
Ple19I	CGATCG	1 cut(s)	321
PleI	GAGTC	3 cut(s)	98, 173, 677
PpsI	GAGTC	3 cut(s)	98, 173, 677
PpuMI	RGGWCCY	1 cut(s)	307
PscI	ACATGT	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	307
PspFI	CCCAGC	2 cut(s)	61, 241
PspN4I	GGNNCC	2 cut(s)	407, 623
PspPI	GGNCC	5 cut(s)	307, 406, 476, 622, 699
PspPPI	RGGWCCY	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	815
PvuI	CGATCG	1 cut(s)	321
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	3 cut(s)	303, 542, 810
SatI	GCNGC	6 cut(s)	6, 256, 433, 489, 549, 753
Sau3AI	GATC	3 cut(s)	318, 781, 815
Sau96I	GGNCC	5 cut(s)	307, 406, 476, 622, 699
SchI	GAGTC	3 cut(s)	99, 174, 677
SduI	GDGCHC	2 cut(s)	131, 592
SfaNI	GCATC	4 cut(s)	254, 285, 346, 352
SfcI	CTRYAG	2 cut(s)	514, 874
SinI	GGWCC	4 cut(s)	307, 476, 622, 699
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	3 cut(s)	30, 418, 541
SmoI	CTYRAG	3 cut(s)	30, 418, 541
Sse9I	AATT	4 cut(s)	191, 626, 650, 885
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	2 cut(s)	428, 498
StuI	AGGCCT	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	236, 348, 371
TaqI	TCGA	5 cut(s)	163, 317, 465, 609, 889
TasI	AATT	4 cut(s)	191, 626, 650, 885
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	2 cut(s)	55, 772
Tru1I	TTAA	3 cut(s)	303, 542, 810
Tru9I	TTAA	3 cut(s)	303, 542, 810
TscAI	CASTG	6 cut(s)	239, 376, 604, 650, 766, 901
TseI	GCWGC	6 cut(s)	5, 255, 432, 488, 548, 752
TspRI	CASTG	6 cut(s)	239, 376, 604, 650, 766, 901
Vha464I	CTTAAG	1 cut(s)	541
VpaK11BI	GGWCC	4 cut(s)	307, 476, 622, 699
XapI	RAATTY	2 cut(s)	191, 885
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	2 cut(s)	581, 725
XmiI	GTMKAC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	2 cut(s)	428, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.