RLG00000027963

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007530
Physical Location & Seq
Forward (+)
17250674 .. 17251579
906 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027963

Sequence Viewer

Length: 906 bp
ATGGCTGCCATGTCCACCGAGTCGTGCTCTCAAGCTCTCACTGTCTTACTAGTAATCCTCCATATCCTTGTCTCAAACTCTTACGCCGGATCCATTGTAGTTTACTGGGGCCAAAATGGGGAAGAAGGCACACTCACAGCAGCATGTAACACAGGAAGATATCGTATCGTAAACATAGCATTCCTCTCACAGTATGGCAATGGCCAAACACCTCAGATCAATTTAGCCGGTCACTGCAATCCAAGATCAAATGGTTGCGTAAAAGTGAGCACAGGCATCAAAAATTGCCAAAACAAAGGCATCAAGGTCCTCCTTTCCATTGGCGGTGCTGCTGGGAATTATGGACTGTCATCAGATGCCGATGCTGGGAAAGTAGCTGACTACATATGGAATAACTTCTTGGGAGGTCAATCGAGCTCAAGGCCTCTGGGCGACGCCGTTTTGGATGGGGTAGATTTCGACATCGAGAAAGGCGGACCCCACTATGATGCGCTTGCTAGGAAGTTGTCTCAGTATAGCCAAAGAGGGAGGAAAGTGTACTTAGGAGCAGCACCGCAGTGCCCATTTCCTGACCAGTATGTAAATGGTGCATTGTCCACTGGCTTATTTGACTATGTTTGGGTTCAATTCTACAACAATCCACAATGTGAGTTCACCTCTAGCAATCCCAATGCCTTTAGGAACTCTTGGAATAAGTGGACATCATCTATACAAGCCAATCAATTCTTTGTTGGGCTTCCAGCTTCTAGAGCAGCTGCTGGGGATGGTTATGTGCCTACAGCTGATCTGATAAACCAAGTGTTGCCTTTTGTTAAGAAGTCTCCCAAGTATGGAGGTATCATGCTCTATGATAGGTTTGAAGATAACAAGACTGGATACAGTTCTGAAGTTATAGGCAGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

302

Amino Acids

32.4

Weight (kDa)

8.08

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 32 - 249 2.1e-21 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 324, 474, 554
AclWI GGATC 2 cut(s) 84, 97
AcoI YGGCCR 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 906
AcyI GRCGYC 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 647
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 3 cut(s) 118, 366, 830
AgsI TTSAA 2 cut(s) 626, 860
AhlI ACTAGT 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AleI CACNNNNGTG 1 cut(s) 556
AluBI AGCT 6 cut(s) 35, 377, 417, 743, 755, 782
AluI AGCT 6 cut(s) 35, 377, 417, 743, 755, 782
Alw21I GWGCWC 3 cut(s) 29, 272, 419
Alw26I GTCTC 3 cut(s) 76, 513, 825
AlwI GGATC 2 cut(s) 84, 97
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 3 cut(s) 109, 202, 422
ApeKI GCWGC 6 cut(s) 5, 140, 329, 548, 752, 755
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 493
AspS9I GGNCC 3 cut(s) 109, 307, 476
AsuHPI GGTGA 1 cut(s) 646
AvaII GGWCC 2 cut(s) 307, 476
BaeGI GKGCMC 1 cut(s) 563
BalI TGGCCA 1 cut(s) 204
BamHI GGATCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 419
Bbv12I GWGCWC 3 cut(s) 29, 272, 419
BbvI GCAGC 5 cut(s) 152, 316, 560, 742, 764
BccI CCATC 2 cut(s) 440, 758
BceAI ACGGC 1 cut(s) 422
BciVI GTATCC 1 cut(s) 869
BcoDI GTCTC 3 cut(s) 76, 513, 825
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 4 cut(s) 50, 498, 660, 747
BfmI CTRYAG 1 cut(s) 777
BfuI GTATCC 1 cut(s) 869
BisI GCNGC 6 cut(s) 6, 141, 330, 549, 753, 756
BlsI GCNGC 6 cut(s) 7, 142, 331, 550, 754, 757
Bme18I GGWCC 2 cut(s) 307, 476
BmgT120I GGNCC 3 cut(s) 109, 307, 476
BmiI GGNNCC 3 cut(s) 91, 110, 478
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 5 cut(s) 285, 309, 346, 352, 478
BmuI ACTGGG 1 cut(s) 115
BplI GAGNNNNNCTC 4 cut(s) 11, 43, 641, 673
BpuEI CTTGAG 2 cut(s) 15, 403
BsaHI GRCGYC 1 cut(s) 435
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 366, 830
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 4 cut(s) 110, 574, 604, 877
Bse3DI GCAATG 1 cut(s) 205
BseGI GGATG 2 cut(s) 451, 769
BseLI CCNNNNNNNGG 3 cut(s) 118, 366, 830
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 227, 524
BseNI ACTGG 4 cut(s) 110, 574, 604, 877
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 5 cut(s) 152, 316, 560, 742, 764
BseYI CCCAGC 3 cut(s) 332, 365, 758
BshFI GGCC 3 cut(s) 111, 204, 424
BsiHKAI GWGCWC 3 cut(s) 29, 272, 419
BsiSI CCGG 2 cut(s) 87, 228
BslI CCNNNNNNNGG 3 cut(s) 118, 366, 830
BsmAI GTCTC 3 cut(s) 76, 513, 825
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 3 cut(s) 111, 204, 424
Bsp1286I GDGCHC 4 cut(s) 29, 272, 419, 563
Bsp143I GATC 4 cut(s) 89, 216, 245, 784
BspACI CCGC 3 cut(s) 324, 474, 554
BspANI GGCC 3 cut(s) 111, 204, 424
BspCNI CTCAG 2 cut(s) 226, 523
BspLI GGNNCC 3 cut(s) 91, 110, 478
BspPI GGATC 2 cut(s) 84, 97
BsrDI GCAATG 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 4 cut(s) 110, 574, 604, 877
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 4 cut(s) 89, 216, 245, 784
BssNI GRCGYC 1 cut(s) 435
Bst4CI ACNGT 4 cut(s) 43, 192, 348, 881
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 213, 510, 541
BstF5I GGATG 2 cut(s) 451, 769
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 4 cut(s) 92, 219, 248, 787
BstMAI GTCTC 3 cut(s) 76, 513, 825
BstMBI GATC 4 cut(s) 89, 216, 245, 784
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstNSI RCATGY 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 777
BstSLI GKGCMC 1 cut(s) 563
BstV1I GCAGC 5 cut(s) 152, 316, 560, 742, 764
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 3 cut(s) 111, 204, 424
BtsCI GGATG 2 cut(s) 451, 769
BtsI GCAGTG 3 cut(s) 232, 563, 904
BtsIMutI CAGTG 5 cut(s) 39, 232, 563, 597, 904
Cac8I GCNNGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 758
CfoI GCGC 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 109, 307, 476
CseI GACGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 538
CviAII CATG 3 cut(s) 10, 144, 841
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 3 cut(s) 213, 510, 541
DpnI GATC 4 cut(s) 91, 218, 247, 786
DpnII GATC 4 cut(s) 89, 216, 245, 784
DraIII CACNNNGTG 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 202
EciI GGCGGA 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 419
Eco32I GATATC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 307, 476
Eco53kI GAGCTC 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 307
EcoRV GATATC 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 419
FaeI CATG 3 cut(s) 13, 147, 844
FatI CATG 3 cut(s) 9, 143, 840
FauNDI CATATG 1 cut(s) 386
Fnu4HI GCNGC 6 cut(s) 6, 141, 330, 549, 753, 756
FokI GGATG 2 cut(s) 458, 776
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 6 cut(s) 6, 141, 330, 549, 753, 756
FspBI CTAG 4 cut(s) 50, 498, 660, 747
GlaI GCGC 1 cut(s) 492
GluI GCNGC 6 cut(s) 6, 141, 330, 549, 753, 756
GsaI CCCAGC 3 cut(s) 336, 369, 762
HaeIII GGCC 3 cut(s) 111, 204, 424
HapII CCGG 2 cut(s) 87, 228
HgaI GACGC 1 cut(s) 443
HhaI GCGC 1 cut(s) 493
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 3 cut(s) 13, 147, 844
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 87, 228
HphI GGTGA 1 cut(s) 646
Hpy166II GTNNAC 7 cut(s) 15, 103, 172, 538, 597, 654, 699
Hpy188I TCNGA 4 cut(s) 216, 355, 789, 886
Hpy188III TCNNGA 3 cut(s) 466, 569, 747
Hpy8I GTNNAC 7 cut(s) 15, 103, 172, 538, 597, 654, 699
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 4 cut(s) 43, 192, 348, 881
HpyCH4V TGCA 2 cut(s) 237, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 3 cut(s) 213, 510, 541
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 3 cut(s) 13, 147, 844
HspAI GCGC 1 cut(s) 491
Kzo9I GATC 4 cut(s) 89, 216, 245, 784
LmnI GCTCC 1 cut(s) 545
Lsp1109I GCAGC 5 cut(s) 152, 316, 560, 742, 764
LweI GCATC 5 cut(s) 285, 309, 346, 352, 478
MaeI CTAG 4 cut(s) 50, 498, 660, 747
MaeIII GTNAC 2 cut(s) 146, 230
MalI GATC 4 cut(s) 91, 218, 247, 786
MboI GATC 4 cut(s) 89, 216, 245, 784
MboII GAAGA 3 cut(s) 134, 168, 872
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 4 cut(s) 29, 272, 419, 563
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 5 cut(s) 220, 283, 337, 626, 722
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 204
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 2 cut(s) 486, 556
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 755, 782
MspI CCGG 2 cut(s) 87, 228
Mva1269I GAATGC 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 749
NdeI CATATG 1 cut(s) 386
NdeII GATC 4 cut(s) 89, 216, 245, 784
NlaIII CATG 3 cut(s) 13, 147, 844
NlaIV GGNNCC 3 cut(s) 91, 110, 478
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 556
PceI AGGCCT 1 cut(s) 424
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 395
PkrI GCNGC 6 cut(s) 7, 142, 331, 550, 754, 757
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PpuMI RGGWCCY 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 307
PspFI CCCAGC 3 cut(s) 332, 365, 758
PspN4I GGNNCC 3 cut(s) 91, 110, 478
PspPI GGNCC 3 cut(s) 109, 307, 476
PspPPI RGGWCCY 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 89
PvuII CAGCTG 2 cut(s) 755, 782
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 2 cut(s) 486, 556
SacI GAGCTC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 6 cut(s) 6, 141, 330, 549, 753, 756
Sau3AI GATC 4 cut(s) 89, 216, 245, 784
Sau96I GGNCC 3 cut(s) 109, 307, 476
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 4 cut(s) 29, 272, 419, 563
SfaNI GCATC 5 cut(s) 285, 309, 346, 352, 478
SfcI CTRYAG 1 cut(s) 777
SinI GGWCC 2 cut(s) 307, 476
SmiMI CAYNNNNRTG 2 cut(s) 486, 556
SmlI CTYRAG 2 cut(s) 30, 418
SmoI CTYRAG 2 cut(s) 30, 418
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 5 cut(s) 220, 283, 337, 626, 722
SseBI AGGCCT 1 cut(s) 424
SsiI CCGC 3 cut(s) 324, 474, 554
SspMI CTAG 4 cut(s) 50, 498, 660, 747
SstI GAGCTC 1 cut(s) 419
StuI AGGCCT 1 cut(s) 424
TaaI ACNGT 4 cut(s) 43, 192, 348, 881
TaqI TCGA 3 cut(s) 413, 459, 465
TasI AATT 5 cut(s) 220, 283, 337, 626, 722
TatI WGTACW 1 cut(s) 537
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 5 cut(s) 46, 239, 563, 604, 904
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 6 cut(s) 5, 140, 329, 548, 752, 755
Tsp45I GTSAC 1 cut(s) 230
TspRI CASTG 5 cut(s) 46, 239, 563, 604, 904
VpaK11BI GGWCC 2 cut(s) 307, 476
XbaI TCTAGA 1 cut(s) 746
XceI RCATGY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 4 cut(s) 50, 498, 660, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.