Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007530

Physical Location & Seq

Genomic Coordinates Forward (+)

13886156 .. 13887218

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTTCCCTGTTTACCAAGTCTTGTTCTAAAGTTGTCATTACCTTCCTACTGATTCTCCCGTTTTTGGTTTCAAGGTCGTTCGCCGGGCGCATTGTGGTTTATTGGGGACAAAATGGAGGGGAGGGCACACTAACAGCAACATGTCACACAGGAAGGTACCGGATTGTAAACATAGCATTCCTCTCACAGTTCGGCAATGGCCAGACCCCTCAAATCAACTTAGCCGGGCACTGTGATCCGGCGTCTAACGGCTGTCAAAAAGTGAGCACCAGCATCAGAAACTGCCAGAACCAAGGCATTAAGGTCCTGCTTTCGATTGGCGGCAGCTTGGAGAGTTACACGCTACCATCTGCAGATGATGCTAGAGGTGTAGCGGACTACATATGGAATAACTTCTTAGGGGGGCAATCAAACTCGAGGCCTCTAGGAGACGCCGTATTGGATGGCGTGGATTTCGATATCGAGAGAGGTGAGATTCAGTACGCTGCACTTGCTAGGAGGCTTTCTGAGTATAGCCGGAGAGGTAGAAAAGTGTACTTAAGTGCAGCACCGCAATGTCCGTTTCCTGACCAGAAACTCAATGGTGCACTAACCACTGGGAAGTTGCTCATGAGTTTCCAAAAACAAAACCGTGAGGGAATGGTAAGCCCAAAGCGGACAATATCGTACTACGGTAGTGGAGCTGGCCCGGGAAGTTATCTTCCGCGGGCCCTAATAGTTTTGCAGTCTAGCAACCTATTTATTTATGGTCTATCTTTAAGAGCAAATTTTCAATGTATTGGAAACACGACTTGGTGTACCAACTGTGTTCTTTTTCAGTGTCCTTGTTTCCAAACATCTTTTGGCATGCTACATCTACTTAAAATTCTAACATATTTTTTTCTGGAGTGGTTGAAGATTTTCATAGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

306

Amino Acids

33.6

Weight (kDa)

9.21

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15680
prunus_persica	Prupe.2G181400_v2.0.a1 Prupe.2G181500_v2.0.a1 Prupe.2G181600_v2.0.a1
pyrus_communis	pycom07g12500 pycom07g12560 pycom07g12610 pycom13g15500 pycom15g35750
rosa_chinensis	RchiOBHm_Chr1g0358401 RchiOBHm_Chr1g0358411
rosa_laevigata	RLG00000027962 RLG00000027963
rosa_multiflora	Rmu_sc0000147.1_g000093 Rmu_sc0002144.1_g000033
rosa_roxburghii	Rroxscaffold_4G00297990
rosa_rugosa	Rorug01G0261500
rosa_samantha	Rh1AG275800 Rh1AG276100 Rh1BG242400 Rh1BG242600 Rh1CG259000 Rh1CG259600
rosa_wichuraiana	Rw1G024540 Rw1G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	1 cut(s)	709
AciI	CCGC	6 cut(s)	324, 377, 554, 658, 707, 709
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	769, 867
AcyI	GRCGYC	2 cut(s)	245, 435
AfaI	GTAC	5 cut(s)	161, 485, 539, 671, 802
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflII	CTTAAG	1 cut(s)	541
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	75, 776, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AluBI	AGCT	2 cut(s)	330, 686
AluI	AGCT	2 cut(s)	330, 686
Alw21I	GWGCWC	2 cut(s)	272, 592
Alw26I	GTCTC	1 cut(s)	426
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	285
Ama87I	CYCGRG	2 cut(s)	418, 691
AoxI	GGCC	4 cut(s)	202, 422, 688, 711
ApaI	GGGCCC	1 cut(s)	715
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	3 cut(s)	327, 488, 548
ApoI	RAATTY	2 cut(s)	769, 867
Asp700I	GAANNNNTTC	2 cut(s)	395, 902
Asp718I	GGTACC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	4 cut(s)	307, 689, 711, 712
AsuC2I	CCSGG	4 cut(s)	88, 229, 692, 693
AsuHPI	GGTGA	1 cut(s)	485
AvaI	CYCGRG	2 cut(s)	418, 691
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	4 cut(s)	131, 234, 592, 715
BalI	TGGCCA	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	715
Bbv12I	GWGCWC	2 cut(s)	272, 592
BbvI	GCAGC	3 cut(s)	339, 475, 560
BccI	CCATC	2 cut(s)	358, 440
BceAI	ACGGC	2 cut(s)	268, 422
BcnI	CCSGG	4 cut(s)	88, 229, 692, 693
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	4 cut(s)	366, 428, 498, 732
BfmI	CTRYAG	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	541
BisI	GCNGC	4 cut(s)	325, 328, 489, 549
BlsI	GCNGC	4 cut(s)	326, 329, 490, 550
Bme1390I	CCNGG	4 cut(s)	88, 229, 692, 693
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	2 cut(s)	418, 691
BmgT120I	GGNCC	4 cut(s)	307, 689, 711, 712
BmiI	GGNNCC	2 cut(s)	161, 713
BmrFI	CCNGG	4 cut(s)	88, 229, 692, 693
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	2 cut(s)	285, 352
BmuI	ACTGGG	1 cut(s)	609
BpmI	CTGGAG	1 cut(s)	908
BpuMI	CCSGG	4 cut(s)	88, 229, 692, 693
BsaHI	GRCGYC	2 cut(s)	245, 435
BsaJI	CCNNGG	3 cut(s)	295, 691, 707
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	2 cut(s)	205, 563
BseDI	CCNNGG	3 cut(s)	295, 691, 707
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	205, 563
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	604
BseSI	GKGCMC	4 cut(s)	131, 234, 592, 715
BseXI	GCAGC	3 cut(s)	339, 475, 560
BsgI	GTGCAG	2 cut(s)	474, 567
Bsh1236I	CGCG	1 cut(s)	709
BshFI	GGCC	4 cut(s)	204, 424, 690, 713
BshNI	GGYRCC	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	272, 592
BsiHKCI	CYCGRG	2 cut(s)	418, 691
BsiSI	CCGG	6 cut(s)	87, 163, 228, 242, 520, 692
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	426
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	4 cut(s)	204, 424, 690, 713
BsoBI	CYCGRG	2 cut(s)	418, 691
Bsp120I	GGGCCC	1 cut(s)	711
Bsp1286I	GDGCHC	5 cut(s)	131, 234, 272, 592, 715
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	6 cut(s)	324, 377, 554, 658, 707, 709
BspANI	GGCC	4 cut(s)	204, 424, 690, 713
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	709
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	161, 713
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	541
BsrDI	GCAATG	2 cut(s)	205, 563
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	3 cut(s)	295, 691, 707
BssMI	GATC	1 cut(s)	238
BssNI	GRCGYC	2 cut(s)	245, 435
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	5 cut(s)	192, 236, 635, 677, 809
BstACI	GRCGYC	2 cut(s)	245, 435
BstAFI	CTTAAG	1 cut(s)	541
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	688, 711, 851
BstDEI	CTNAG	3 cut(s)	223, 400, 510
BstDSI	CCRYGG	1 cut(s)	707
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 494
BstNSI	RCATGY	2 cut(s)	147, 853
BstSCI	CCNGG	4 cut(s)	86, 227, 690, 691
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	4 cut(s)	131, 234, 592, 715
BstUI	CGCG	1 cut(s)	709
BstV1I	GCAGC	3 cut(s)	339, 475, 560
BsuRI	GGCC	4 cut(s)	204, 424, 690, 713
BtgI	CCRYGG	1 cut(s)	707
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	232, 597, 827
Cac8I	GCNNGC	3 cut(s)	688, 711, 851
CaiI	CAGNNNCTG	1 cut(s)	285
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	307, 689, 711, 712
Cfr42I	CCGCGG	1 cut(s)	710
Cfr9I	CCCGGG	1 cut(s)	691
CseI	GACGC	2 cut(s)	234, 443
Csp6I	GTAC	5 cut(s)	160, 484, 538, 670, 801
CviAII	CATG	3 cut(s)	144, 613, 850
CviQI	GTAC	5 cut(s)	160, 484, 538, 670, 801
DdeI	CTNAG	3 cut(s)	223, 400, 510
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	715
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	2 cut(s)	418, 691
EcoO109I	RGGNCCY	2 cut(s)	307, 712
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	3 cut(s)	147, 616, 853
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	3 cut(s)	143, 612, 849
FauI	CCCGC	1 cut(s)	702
FauNDI	CATATG	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	325, 328, 489, 549
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	715
Fsp4HI	GCNGC	4 cut(s)	325, 328, 489, 549
FspBI	CTAG	4 cut(s)	366, 428, 498, 732
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	4 cut(s)	325, 328, 489, 549
GsuI	CTGGAG	1 cut(s)	908
HaeIII	GGCC	4 cut(s)	204, 424, 690, 713
HapII	CCGG	6 cut(s)	87, 163, 228, 242, 520, 692
HgaI	GACGC	2 cut(s)	234, 443
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	2 cut(s)	245, 435
Hin1II	CATG	3 cut(s)	147, 616, 853
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	55, 478
HpaII	CCGG	6 cut(s)	87, 163, 228, 242, 520, 692
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	5 cut(s)	15, 172, 538, 590, 801
Hpy188I	TCNGA	2 cut(s)	281, 511
Hpy188III	TCNNGA	4 cut(s)	466, 569, 613, 887
Hpy8I	GTNNAC	5 cut(s)	15, 172, 538, 590, 801
HpyAV	CCTTC	2 cut(s)	55, 150
HpyCH4III	ACNGT	5 cut(s)	192, 236, 635, 677, 809
HpyCH4V	TGCA	5 cut(s)	356, 491, 548, 590, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 494
HpyF3I	CTNAG	3 cut(s)	223, 400, 510
Hsp92I	GRCGYC	2 cut(s)	245, 435
Hsp92II	CATG	3 cut(s)	147, 616, 853
HspAI	GCGC	1 cut(s)	91
KpnI	GGTACC	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	710
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	3 cut(s)	339, 475, 560
LweI	GCATC	2 cut(s)	285, 352
MaeI	CTAG	4 cut(s)	366, 428, 498, 732
MaeIII	GTNAC	2 cut(s)	146, 338
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	695, 910
MhlI	GDGCHC	5 cut(s)	131, 234, 272, 592, 715
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	2 cut(s)	769, 867
MluNI	TGGCCA	1 cut(s)	204
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	2 cut(s)	395, 902
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	4 cut(s)	303, 542, 761, 864
MslI	CAYNNNNRTG	1 cut(s)	556
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	709
MspCI	CTTAAG	1 cut(s)	541
MspI	CCGG	6 cut(s)	87, 163, 228, 242, 520, 692
MspR9I	CCNGG	4 cut(s)	88, 229, 692, 693
Mva1269I	GAATGC	1 cut(s)	179
MvnI	CGCG	1 cut(s)	709
MwoI	GCNNNNNNNGC	2 cut(s)	362, 494
NciI	CCSGG	4 cut(s)	88, 229, 692, 693
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	147, 616, 853
NlaIV	GGNNCC	2 cut(s)	161, 713
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	2 cut(s)	147, 853
PaeI	GCATGC	1 cut(s)	853
PaeR7I	CTCGAG	1 cut(s)	418
PagI	TCATGA	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	424
PciI	ACATGT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	179
PdmI	GAANNNNTTC	2 cut(s)	395, 902
PfeI	GAWTC	2 cut(s)	55, 478
PkrI	GCNGC	4 cut(s)	326, 329, 490, 550
PpuMI	RGGWCCY	1 cut(s)	307
PscI	ACATGT	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	161, 713
PspOMI	GGGCCC	1 cut(s)	711
PspPI	GGNCC	4 cut(s)	307, 689, 711, 712
PspPPI	RGGWCCY	1 cut(s)	307
PspXI	VCTCGAGB	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	285
RsaI	GTAC	5 cut(s)	161, 485, 539, 671, 802
RsaNI	GTAC	5 cut(s)	160, 484, 538, 670, 801
RseI	CAYNNNNRTG	1 cut(s)	556
SacII	CCGCGG	1 cut(s)	710
SaqAI	TTAA	4 cut(s)	303, 542, 761, 864
SatI	GCNGC	4 cut(s)	325, 328, 489, 549
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	4 cut(s)	307, 689, 711, 712
ScrFI	CCNGG	4 cut(s)	88, 229, 692, 693
SduI	GDGCHC	5 cut(s)	131, 234, 272, 592, 715
SfaNI	GCATC	2 cut(s)	285, 352
SfcI	CTRYAG	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	418
Sfr303I	CCGCGG	1 cut(s)	710
SgrBI	CCGCGG	1 cut(s)	710
SinI	GGWCC	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	418
SmaI	CCCGGG	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	2 cut(s)	418, 541
SmoI	CTYRAG	2 cut(s)	418, 541
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	2 cut(s)	769, 867
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	6 cut(s)	324, 377, 554, 658, 707, 709
SspMI	CTAG	4 cut(s)	366, 428, 498, 732
StuI	AGGCCT	1 cut(s)	424
StyD4I	CCNGG	4 cut(s)	86, 227, 690, 691
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	5 cut(s)	192, 236, 635, 677, 809
TaqI	TCGA	4 cut(s)	317, 419, 459, 465
TasI	AATT	2 cut(s)	769, 867
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	55, 478
Tru1I	TTAA	4 cut(s)	303, 542, 761, 864
Tru9I	TTAA	4 cut(s)	303, 542, 761, 864
TscAI	CASTG	3 cut(s)	239, 604, 827
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	3 cut(s)	327, 488, 548
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	895
TspGWI	ACGGA	1 cut(s)	552
TspMI	CCCGGG	1 cut(s)	691
TspRI	CASTG	3 cut(s)	239, 604, 827
Vha464I	CTTAAG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	2 cut(s)	769, 867
XceI	RCATGY	2 cut(s)	147, 853
XcmI	CCANNNNNNNNNTGG	2 cut(s)	581, 842
XhoI	CTCGAG	1 cut(s)	418
XmaI	CCCGGG	1 cut(s)	691
XmnI	GAANNNNTTC	2 cut(s)	395, 902
XspI	CTAG	4 cut(s)	366, 428, 498, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.