RLG00000027962

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007530
Physical Location & Seq
Forward (+)
17241937 .. 17242396
460 bp
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UTR
Exon/CDS
Intron
RLM00000027962

Sequence Viewer

Length: 369 bp
ATGGATTTCGACATTGAGAAGGGCAAACCTCACTATGCTGCACTGGCTAGGAAGTTATTCGAGTATAGCACAAGTAGCCAAAAAGTGTTATTATCTGCAGCACCACAATGCCCATTTCCTGACCAGAAACTCAATGGTGCATTAACTACAGGGCTATTTGACTATGTTTGGGTTCAATTCTACAACAACCCACAATGTGAATATAGCTCTAGCAATTTTCATGCCTTCAAGAACTCATGGAACCAATGGAACACCATAGACGCTAGATTGTTCTTTGTCGGGCTTCCTCCAGCTTCACATGCAGTTGCTGGCAGTGGGTTTGAAGACATTAAGACCGGATATAGTACTAAAATCCAAGGCAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

123

Amino Acids

13.67

Weight (kDa)

6.81

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 2 - 86 3.8e-06 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 346
AgsI TTSAA 3 cut(s) 176, 229, 323
AluBI AGCT 2 cut(s) 207, 293
AluI AGCT 2 cut(s) 207, 293
AlwNI CAGNNNCTG 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 38, 98
Asp700I GAANNNNTTC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 25, 110
BfaI CTAG 3 cut(s) 48, 210, 264
BfmI CTRYAG 2 cut(s) 96, 147
BisI GCNGC 2 cut(s) 39, 99
BlsI GCNGC 2 cut(s) 40, 100
BmcAI AGTACT 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 25, 110
BsgI GTGCAG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 242
BspMAI CTGCAG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 44, 75, 299
BstNSI RCATGY 1 cut(s) 302
BstSFI CTRYAG 2 cut(s) 96, 147
BstV1I GCAGC 2 cut(s) 25, 110
BstV2I GAAGAC 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 41, 319
Cac8I GCNNGC 1 cut(s) 310
CaiI CAGNNNCTG 1 cut(s) 308
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 345
CviAII CATG 3 cut(s) 221, 237, 299
CviJI RGCY 6 cut(s) 47, 78, 154, 207, 283, 293
CviKI_1 RGCY 6 cut(s) 47, 78, 154, 207, 283, 293
CviQI GTAC 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 3 cut(s) 224, 240, 302
FaiI YATR 9 cut(s) 36, 66, 165, 204, 222, 238, 257, 300, 342
FatI CATG 3 cut(s) 220, 236, 298
Fnu4HI GCNGC 2 cut(s) 39, 99
Fsp4HI GCNGC 2 cut(s) 39, 99
FspBI CTAG 3 cut(s) 48, 210, 264
GluI GCNGC 2 cut(s) 39, 99
GsuI CTGGAG 1 cut(s) 273
HapII CCGG 1 cut(s) 336
HgaI GACGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 224, 240, 302
HpaII CCGG 1 cut(s) 336
Hpy188III TCNNGA 2 cut(s) 119, 229
HpyAV CCTTC 2 cut(s) 13, 235
HpyCH4V TGCA 4 cut(s) 41, 98, 140, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 75, 299
Hsp92II CATG 3 cut(s) 224, 240, 302
LpnPI CCDG 7 cut(s) 29, 132, 135, 137, 294, 303, 349
Lsp1109I GCAGC 2 cut(s) 25, 110
MaeI CTAG 3 cut(s) 48, 210, 264
MboII GAAGA 1 cut(s) 335
MluCI AATT 2 cut(s) 176, 214
MnlI CCTC 2 cut(s) 39, 297
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 3 cut(s) 143, 330, 367
MslI CAYNNNNRTG 1 cut(s) 106
MspI CCGG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 44, 75, 299
NlaIII CATG 3 cut(s) 224, 240, 302
NlaIV GGNNCC 1 cut(s) 242
NspI RCATGY 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 40, 100
PspN4I GGNNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 106
SaqAI TTAA 3 cut(s) 143, 330, 367
SatI GCNGC 2 cut(s) 39, 99
ScaI AGTACT 1 cut(s) 346
SetI ASST 3 cut(s) 31, 209, 295
SfcI CTRYAG 2 cut(s) 96, 147
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 2 cut(s) 176, 214
SspMI CTAG 3 cut(s) 48, 210, 264
StyI CCWWGG 1 cut(s) 355
TaqI TCGA 2 cut(s) 9, 60
TasI AATT 2 cut(s) 176, 214
TatI WGTACW 1 cut(s) 344
Tru1I TTAA 3 cut(s) 143, 330, 367
Tru9I TTAA 3 cut(s) 143, 330, 367
TscAI CASTG 2 cut(s) 48, 319
TseI GCWGC 2 cut(s) 38, 98
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 2 cut(s) 48, 319
XceI RCATGY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 3 cut(s) 48, 210, 264
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.