Rh1BG242600

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007530
Physical Location & Seq
Reverse (-)
36946044 .. 36946914
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG242600.1

Sequence Viewer

Length: 756 bp
ATGGCTGCCTTGTTCGCCAAGTTTTGTTCTCAAGCTGTCATTATTTTCCTTCTCATTGTCCCTTCCTTGGTTTCCAAGTCATGTGCTACACGCATTGTGGTTTACTGGGGCCAAAATGAAGGTGAAGCATCCAATGGCTGCCAAGGCATCAGCAAGGGAGTTCGAAACTGCCAAAACGAAGGGATTAAGGTCCTGCTTTCAATTGGTGGTTCCAATGGGAGCTACACACTATCAGATGCAGATGATGCCAGGCGTGTAGCAGACTACATATGGAATAACTTCTTAGGGGGGAAATCAAACTCAAGGCCTTTAGGCGTCGCTGTTTTAGATGGTGTGGATTTCGACATTGAGAAGGGCGAACCTCACTATGCTGCACTGGCTAGGAAGTTATCCGAGTATAGCGCAAGTAGCCAAAAAGTGTTATTATCTGCAGCACCACAATGCCCATTTCCTGACCAGAAACTCAATGGTGCATTAACTACAGGCCTATTTGACTATGTTTGGGTTCAATTCTACAACAACCCACAATGTGAATATAGCTCTAGAAATTTTGATGCCTTCAAGAACTCATGGAACCAATGGAACACCATAGACGCTAGATTGTTCTTTGTCGGGCTTCCAGCTTCACATGCAGCTGCTGGCAGTGGCTATGTGCCTTCAAATGATATGATAAACCAGGTGTTGCCTTTTGTTAAGATGTCTGCCAAGTATGGAGGTGTCATGCTCTATGATAGGTTTGAAGATAAATCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

251

Amino Acids

27.46

Weight (kDa)

6.71

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 46 - 190 2.4e-18 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 547
AcyI GRCGYC 1 cut(s) 315
AdeI CACNNNGTG 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 5 cut(s) 201, 509, 562, 660, 740
AjnI CCWGG 2 cut(s) 248, 675
AluBI AGCT 5 cut(s) 35, 222, 540, 623, 635
AluI AGCT 5 cut(s) 35, 222, 540, 623, 635
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 3 cut(s) 109, 305, 484
ApeKI GCWGC 6 cut(s) 5, 138, 371, 431, 632, 635
ApoI RAATTY 1 cut(s) 547
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 2 cut(s) 109, 190
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 5 cut(s) 125, 358, 443, 622, 644
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 2 cut(s) 250, 677
BfaI CTAG 3 cut(s) 381, 543, 597
BfmI CTRYAG 2 cut(s) 429, 480
BisI GCNGC 6 cut(s) 6, 139, 372, 432, 633, 636
BlsI GCNGC 6 cut(s) 7, 140, 373, 433, 634, 637
Bme1390I CCNGG 2 cut(s) 250, 677
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 109, 190
BmiI GGNNCC 3 cut(s) 110, 211, 575
BmrFI CCNGG 2 cut(s) 250, 677
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 5 cut(s) 137, 156, 226, 235, 544
BmuI ACTGGG 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 163
BpuEI CTTGAG 2 cut(s) 15, 286
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 66, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 110, 381
BseBI CCWGG 2 cut(s) 250, 677
BseDI CCNNGG 2 cut(s) 66, 142
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 67
BseNI ACTGG 2 cut(s) 110, 381
BseXI GCAGC 5 cut(s) 125, 358, 443, 622, 644
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 111, 307, 486
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 3 cut(s) 111, 307, 486
Bsp119I TTCGAA 1 cut(s) 163
BspANI GGCC 3 cut(s) 111, 307, 486
BspLI GGNNCC 3 cut(s) 110, 211, 575
BspMAI CTGCAG 1 cut(s) 433
BspT104I TTCGAA 1 cut(s) 163
BsrI ACTGG 2 cut(s) 110, 381
BssECI CCNNGG 2 cut(s) 66, 142
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 66, 142
Bst2UI CCWGG 2 cut(s) 250, 677
BstACI GRCGYC 1 cut(s) 315
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 404
BstMWI GCNNNNNNNGC 6 cut(s) 14, 144, 245, 377, 408, 629
BstNI CCWGG 2 cut(s) 250, 677
BstNSI RCATGY 1 cut(s) 632
BstSCI CCNGG 2 cut(s) 248, 675
BstSFI CTRYAG 2 cut(s) 429, 480
BstV1I GCAGC 5 cut(s) 125, 358, 443, 622, 644
BsuRI GGCC 3 cut(s) 111, 307, 486
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 649
BtsIMutI CAGTG 2 cut(s) 374, 649
Cac8I GCNNGC 1 cut(s) 640
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 109, 190
CseI GACGC 2 cut(s) 304, 602
CsiI ACCWGGT 1 cut(s) 675
CviAII CATG 4 cut(s) 81, 570, 629, 721
DdeI CTNAG 1 cut(s) 283
DraIII CACNNNGTG 1 cut(s) 530
Eco130I CCWWGG 2 cut(s) 66, 142
Eco147I AGGCCT 2 cut(s) 307, 486
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 248, 675
EcoT14I CCWWGG 2 cut(s) 66, 142
ErhI CCWWGG 2 cut(s) 66, 142
FaeI CATG 4 cut(s) 84, 573, 632, 724
FaqI GGGAC 1 cut(s) 44
FatI CATG 4 cut(s) 80, 569, 628, 720
FauNDI CATATG 1 cut(s) 269
Fnu4HI GCNGC 6 cut(s) 6, 139, 372, 432, 633, 636
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 6 cut(s) 6, 139, 372, 432, 633, 636
FspBI CTAG 3 cut(s) 381, 543, 597
GlaI GCGC 1 cut(s) 403
GluI GCNGC 6 cut(s) 6, 139, 372, 432, 633, 636
HaeIII GGCC 3 cut(s) 111, 307, 486
HgaI GACGC 2 cut(s) 304, 602
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 4 cut(s) 84, 573, 632, 724
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 235, 394
Hpy188III TCNNGA 3 cut(s) 452, 543, 562
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 7 cut(s) 59, 72, 113, 173, 346, 568, 666
HpyCH4V TGCA 5 cut(s) 239, 374, 431, 473, 632
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 144, 245, 377, 408, 629
HpyF3I CTNAG 1 cut(s) 283
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 4 cut(s) 84, 573, 632, 724
HspAI GCGC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 219
Lsp1109I GCAGC 5 cut(s) 125, 358, 443, 622, 644
LweI GCATC 5 cut(s) 137, 156, 226, 235, 544
MabI ACCWGGT 1 cut(s) 675
MaeI CTAG 3 cut(s) 381, 543, 597
MboII GAAGA 1 cut(s) 752
MfeI CAATTG 1 cut(s) 201
MluCI AATT 4 cut(s) 201, 509, 547, 751
MnlI CCTC 2 cut(s) 372, 707
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 4 cut(s) 186, 476, 693, 754
MslI CAYNNNNRTG 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 635
MspR9I CCNGG 2 cut(s) 250, 677
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 2 cut(s) 250, 677
MwoI GCNNNNNNNGC 6 cut(s) 14, 144, 245, 377, 408, 629
NdeI CATATG 1 cut(s) 269
NlaIII CATG 4 cut(s) 84, 573, 632, 724
NlaIV GGNNCC 3 cut(s) 110, 211, 575
NspI RCATGY 1 cut(s) 632
NspV TTCGAA 1 cut(s) 163
PceI AGGCCT 2 cut(s) 307, 486
PdmI GAANNNNTTC 1 cut(s) 278
PkrI GCNGC 6 cut(s) 7, 140, 373, 433, 634, 637
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 248, 675
PspGI CCWGG 2 cut(s) 248, 675
PspN4I GGNNCC 3 cut(s) 110, 211, 575
PspPI GGNCC 2 cut(s) 109, 190
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 635
RseI CAYNNNNRTG 1 cut(s) 439
SaqAI TTAA 4 cut(s) 186, 476, 693, 754
SatI GCNGC 6 cut(s) 6, 139, 372, 432, 633, 636
Sau96I GGNCC 2 cut(s) 109, 190
ScrFI CCNGG 2 cut(s) 250, 677
SexAI ACCWGGT 1 cut(s) 675
SfaNI GCATC 5 cut(s) 137, 156, 226, 235, 544
SfcI CTRYAG 2 cut(s) 429, 480
SfuI TTCGAA 1 cut(s) 163
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 2 cut(s) 30, 301
SmoI CTYRAG 2 cut(s) 30, 301
Sse9I AATT 4 cut(s) 201, 509, 547, 751
SseBI AGGCCT 2 cut(s) 307, 486
SspMI CTAG 3 cut(s) 381, 543, 597
StuI AGGCCT 2 cut(s) 307, 486
StyD4I CCNGG 2 cut(s) 248, 675
StyI CCWWGG 2 cut(s) 66, 142
TaqI TCGA 2 cut(s) 163, 342
TasI AATT 4 cut(s) 201, 509, 547, 751
Tru1I TTAA 4 cut(s) 186, 476, 693, 754
Tru9I TTAA 4 cut(s) 186, 476, 693, 754
TscAI CASTG 2 cut(s) 381, 649
TseI GCWGC 6 cut(s) 5, 138, 371, 431, 632, 635
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 2 cut(s) 381, 649
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 547
XbaI TCTAGA 1 cut(s) 542
XceI RCATGY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 3 cut(s) 381, 543, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.