Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007530

Physical Location & Seq

Genomic Coordinates Forward (+)

13911186 .. 13912420

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTTCCCTGTTTACCAAGTCTTGTTCTAAAGTTGTCATTACCTTCCTACTGATTCTCCCATTTTTGGTTTCGAGGTCGTTCGCCGGGCGCATTGTGGTTTATTGGGGACAAAATGGAGGGGAGGGCACACTAACAGCAACATGTCACACAGGAAGGTACCGGATTGTAAACATAGCATTCCTCTCACAGTTCGGCAATGGCCAGACCCCTCAAATCAACTTAGCCGGGCACTGCGATCCGGCGTCTAACGGCATTAAGGTCCTGCTTTCGATTGGCGGCAGCTTGGAGAGTTACACGCTACCATCTGCAGATGATGCTAGAGGTGTAGCGGACTATTTATGGAATAACTTCTTAGGGGGGCAATCAAACTCGAGGCCTCTAGGAGACGCCGTATTGGATGGCGTGGATTTCGATATCGAGAGAGGTGAGATTCAGTACGCTGCACTTGCTAGGAGGCTTTCTGAGTATAGCCGGAGAGGTAGAAAAGTGTACTTAAGTGCAGCACCGCAATGTCCGTTTCCTGACCAAAAACTCAATGGTGCACTAACCACTGGCTTATTTGACTATGTTTGGGTTCAATTCTACAACAATCCACAGTGTGAATTCACCTCTAGCAATCCAGATGCCTTCAAGAACTCATGGAACAAATGGAACTCCTCCATACAAGCTGATCAATCCTTCGTGGGGCTCCCTGCTGCGCGGGCGGCTGCTGGCTCTGGCTATGTGCCTTCAAATGATCTGATAAACCAAGTTTTGCCTTTCGTTAAGAAATCTGCGAAGTATGGAGGTGTCATGTTGTATGTTAAGTTCAATGATGACAGAAGTGGCTATAGTTCAAAGATTCAAGGGAGCTTAAGTCGTGCCATCAGTTTATCGTTTCCTTTGATAATAAAACACACACACACACACACACACACATACGCTGTTCAAATCTTTAAGTTTGTGATGTCTAATAAATTCTTATTCATAAATTCAAGAGCTAGCAAGGAAAACTGTACATGGAAAAATTGCCGGATCACCTTTGACACATGCATTCAAGATAACTCATACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

353

Amino Acids

38.91

Weight (kDa)

9.18

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15680
prunus_persica	Prupe.2G181400_v2.0.a1 Prupe.2G181500_v2.0.a1 Prupe.2G181600_v2.0.a1
pyrus_communis	pycom07g12500 pycom07g12560 pycom07g12610 pycom13g15500 pycom15g35750
rosa_chinensis	RchiOBHm_Chr1g0358401 RchiOBHm_Chr1g0358411
rosa_laevigata	RLG00000027962 RLG00000027963
rosa_multiflora	Rmu_sc0000147.1_g000093 Rmu_sc0002144.1_g000033
rosa_roxburghii	Rroxscaffold_4G00297990
rosa_rugosa	Rorug01G0261500
rosa_samantha	Rh1AG275800 Rh1AG276100 Rh1BG242400 Rh1BG242600 Rh1CG259000 Rh1CG259600
rosa_wichuraiana	Rw1G024540 Rw1G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	1 cut(s)	703
AciI	CCGC	5 cut(s)	279, 332, 509, 703, 707
AclWI	GGATC	2 cut(s)	233, 1025
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	3 cut(s)	605, 959, 973
AcyI	GRCGYC	2 cut(s)	245, 390
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	4 cut(s)	161, 440, 494, 1000
AfiI	CCNNNNNNNGG	2 cut(s)	67, 687
AflII	CTTAAG	2 cut(s)	496, 856
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	9 cut(s)	581, 634, 735, 814, 840, 848, 932, 978, 1040
AluBI	AGCT	4 cut(s)	285, 671, 855, 983
AluI	AGCT	4 cut(s)	285, 671, 855, 983
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	381
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	233, 1025
Ama87I	CYCGRG	1 cut(s)	373
AoxI	GGCC	2 cut(s)	202, 377
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	5 cut(s)	282, 443, 503, 698, 710
ApoI	RAATTY	3 cut(s)	605, 959, 973
Asp700I	GAANNNNTTC	1 cut(s)	350
Asp718I	GGTACC	1 cut(s)	159
AspLEI	GCGC	2 cut(s)	93, 703
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	2 cut(s)	88, 229
AsuHPI	GGTGA	3 cut(s)	440, 601, 1012
AsuNHI	GCTAGC	1 cut(s)	983
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	3 cut(s)	131, 234, 547
BalI	TGGCCA	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	5 cut(s)	294, 430, 515, 685, 697
BccI	CCATC	3 cut(s)	313, 395, 875
BceAI	ACGGC	2 cut(s)	268, 377
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	2 cut(s)	88, 229
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	5 cut(s)	321, 383, 453, 615, 984
BfmI	CTRYAG	2 cut(s)	309, 832
BfrI	CTTAAG	2 cut(s)	496, 856
BisI	GCNGC	7 cut(s)	280, 283, 444, 504, 699, 708, 711
BlsI	GCNGC	7 cut(s)	281, 284, 445, 505, 700, 709, 712
Bme1390I	CCNGG	2 cut(s)	88, 229
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	161, 692
BmrFI	CCNGG	2 cut(s)	88, 229
BmsI	GCATC	2 cut(s)	307, 616
BmtI	GCTAGC	1 cut(s)	987
BpuMI	CCSGG	2 cut(s)	88, 229
BsaHI	GRCGYC	2 cut(s)	245, 390
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 72, 378, 408, 844, 874
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 687
Bse1I	ACTGG	1 cut(s)	559
Bse3DI	GCAATG	2 cut(s)	205, 518
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	67, 687
BseMI	GCAATG	2 cut(s)	205, 518
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	649
BseSI	GKGCMC	3 cut(s)	131, 234, 547
BseXI	GCAGC	5 cut(s)	294, 430, 515, 685, 697
BsgI	GTGCAG	2 cut(s)	429, 522
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	2 cut(s)	204, 379
BshNI	GGYRCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	6 cut(s)	87, 163, 228, 242, 475, 1015
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	67, 687
BsmAI	GTCTC	1 cut(s)	381
BsmBI	CGTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	2 cut(s)	179, 1035
BsnI	GGCC	2 cut(s)	204, 379
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	4 cut(s)	131, 234, 547, 693
Bsp1407I	TGTACA	1 cut(s)	998
Bsp143I	GATC	4 cut(s)	238, 673, 739, 1017
BspACI	CCGC	5 cut(s)	279, 332, 509, 703, 707
BspANI	GGCC	2 cut(s)	204, 379
BspCNI	CTCAG	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	161, 692
BspMAI	CTGCAG	1 cut(s)	313
BspOI	GCTAGC	1 cut(s)	987
BspPI	GGATC	2 cut(s)	233, 1025
BspT107I	GGYRCC	1 cut(s)	159
BspTI	CTTAAG	2 cut(s)	496, 856
BsrDI	GCAATG	2 cut(s)	205, 518
BsrGI	TGTACA	1 cut(s)	998
BsrI	ACTGG	1 cut(s)	559
BssMI	GATC	4 cut(s)	238, 673, 739, 1017
BssNI	GRCGYC	2 cut(s)	245, 390
Bst4CI	ACNGT	3 cut(s)	192, 600, 998
BstACI	GRCGYC	2 cut(s)	245, 390
BstAFI	CTTAAG	2 cut(s)	496, 856
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	998
BstC8I	GCNNGC	3 cut(s)	705, 715, 985
BstDEI	CTNAG	3 cut(s)	223, 355, 465
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	703
BstHHI	GCGC	2 cut(s)	93, 703
BstKTI	GATC	4 cut(s)	241, 676, 742, 1020
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	4 cut(s)	238, 673, 739, 1017
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 449, 704, 707
BstNSI	RCATGY	2 cut(s)	147, 1035
BstSCI	CCNGG	2 cut(s)	86, 227
BstSFI	CTRYAG	2 cut(s)	309, 832
BstSLI	GKGCMC	3 cut(s)	131, 234, 547
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	5 cut(s)	294, 430, 515, 685, 697
BsuRI	GGCC	2 cut(s)	204, 379
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	232, 552, 605
Cac8I	GCNNGC	3 cut(s)	705, 715, 985
CfoI	GCGC	2 cut(s)	93, 703
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	2 cut(s)	234, 398
Csp6I	GTAC	4 cut(s)	160, 439, 493, 999
CviAII	CATG	5 cut(s)	144, 642, 796, 1002, 1032
CviQI	GTAC	4 cut(s)	160, 439, 493, 999
DdeI	CTNAG	3 cut(s)	223, 355, 465
DpnI	GATC	4 cut(s)	240, 675, 741, 1019
DpnII	GATC	4 cut(s)	238, 673, 739, 1017
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	605
EcoRV	GATATC	1 cut(s)	418
EcoT22I	ATGCAT	1 cut(s)	1037
EcoT38I	GRGCYC	1 cut(s)	693
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	5 cut(s)	147, 645, 799, 1005, 1035
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	5 cut(s)	143, 641, 795, 1001, 1031
FauI	CCCGC	1 cut(s)	696
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	7 cut(s)	280, 283, 444, 504, 699, 708, 711
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	7 cut(s)	280, 283, 444, 504, 699, 708, 711
FspBI	CTAG	5 cut(s)	321, 383, 453, 615, 984
GlaI	GCGC	2 cut(s)	92, 702
GluI	GCNGC	7 cut(s)	280, 283, 444, 504, 699, 708, 711
HaeIII	GGCC	2 cut(s)	204, 379
HapII	CCGG	6 cut(s)	87, 163, 228, 242, 475, 1015
HgaI	GACGC	2 cut(s)	234, 398
HhaI	GCGC	2 cut(s)	93, 703
Hin1I	GRCGYC	2 cut(s)	245, 390
Hin1II	CATG	5 cut(s)	147, 645, 799, 1005, 1035
Hin6I	GCGC	2 cut(s)	91, 701
HinP1I	GCGC	2 cut(s)	91, 701
HinfI	GANTC	3 cut(s)	55, 433, 844
HpaII	CCGG	6 cut(s)	87, 163, 228, 242, 475, 1015
HphI	GGTGA	3 cut(s)	440, 601, 1012
Hpy166II	GTNNAC	4 cut(s)	15, 172, 493, 545
Hpy188I	TCNGA	2 cut(s)	466, 744
Hpy188III	TCNNGA	6 cut(s)	421, 524, 623, 634, 978, 1040
Hpy8I	GTNNAC	4 cut(s)	15, 172, 493, 545
HpyAV	CCTTC	5 cut(s)	55, 150, 640, 691, 741
HpyCH4III	ACNGT	3 cut(s)	192, 600, 998
HpyCH4V	TGCA	5 cut(s)	311, 446, 503, 545, 1035
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 449, 704, 707
HpyF3I	CTNAG	3 cut(s)	223, 355, 465
Hsp92I	GRCGYC	2 cut(s)	245, 390
Hsp92II	CATG	5 cut(s)	147, 645, 799, 1005, 1035
HspAI	GCGC	2 cut(s)	91, 701
KpnI	GGTACC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	238, 673, 739, 1017
LmnI	GCTCC	2 cut(s)	696, 852
Lsp1109I	GCAGC	5 cut(s)	294, 430, 515, 685, 697
LweI	GCATC	2 cut(s)	307, 616
MaeI	CTAG	5 cut(s)	321, 383, 453, 615, 984
MaeIII	GTNAC	2 cut(s)	146, 293
MalI	GATC	4 cut(s)	240, 675, 741, 1019
MboI	GATC	4 cut(s)	238, 673, 739, 1017
MhlI	GDGCHC	4 cut(s)	131, 234, 547, 693
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	5 cut(s)	581, 605, 959, 973, 1009
MluNI	TGGCCA	1 cut(s)	204
Mox20I	TGGCCA	1 cut(s)	204
Mph1103I	ATGCAT	1 cut(s)	1037
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	6 cut(s)	258, 497, 768, 807, 857, 939
MslI	CAYNNNNRTG	2 cut(s)	511, 1054
Msp20I	TGGCCA	1 cut(s)	204
MspCI	CTTAAG	2 cut(s)	496, 856
MspI	CCGG	6 cut(s)	87, 163, 228, 242, 475, 1015
MspR9I	CCNGG	2 cut(s)	88, 229
Mva1269I	GAATGC	2 cut(s)	179, 1035
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	4 cut(s)	317, 449, 704, 707
NciI	CCSGG	2 cut(s)	88, 229
NdeII	GATC	4 cut(s)	238, 673, 739, 1017
NheI	GCTAGC	1 cut(s)	983
NlaIII	CATG	5 cut(s)	147, 645, 799, 1005, 1035
NlaIV	GGNNCC	2 cut(s)	161, 692
NmuCI	GTSAC	1 cut(s)	146
NsiI	ATGCAT	1 cut(s)	1037
NspI	RCATGY	2 cut(s)	147, 1035
PaeR7I	CTCGAG	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	379
PciI	ACATGT	1 cut(s)	143
PctI	GAATGC	2 cut(s)	179, 1035
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	55, 433, 844
PkrI	GCNGC	7 cut(s)	281, 284, 445, 505, 700, 709, 712
PpuMI	RGGWCCY	1 cut(s)	262
PscI	ACATGT	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	161, 692
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
PspXI	VCTCGAGB	1 cut(s)	373
PsrI	GAACNNNNNNTAC	2 cut(s)	794, 826
PstI	CTGCAG	1 cut(s)	313
RsaI	GTAC	4 cut(s)	161, 440, 494, 1000
RsaNI	GTAC	4 cut(s)	160, 439, 493, 999
RseI	CAYNNNNRTG	2 cut(s)	511, 1054
SaqAI	TTAA	6 cut(s)	258, 497, 768, 807, 857, 939
SatI	GCNGC	7 cut(s)	280, 283, 444, 504, 699, 708, 711
Sau3AI	GATC	4 cut(s)	238, 673, 739, 1017
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	88, 229
SduI	GDGCHC	4 cut(s)	131, 234, 547, 693
SfaNI	GCATC	2 cut(s)	307, 616
SfcI	CTRYAG	2 cut(s)	309, 832
Sfr274I	CTCGAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	262
SlaI	CTCGAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	2 cut(s)	511, 1054
SmlI	CTYRAG	3 cut(s)	373, 496, 856
SmoI	CTYRAG	3 cut(s)	373, 496, 856
Sse9I	AATT	5 cut(s)	581, 605, 959, 973, 1009
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	5 cut(s)	279, 332, 509, 703, 707
SspMI	CTAG	5 cut(s)	321, 383, 453, 615, 984
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	2 cut(s)	86, 227
TaaI	ACNGT	3 cut(s)	192, 600, 998
TaqI	TCGA	5 cut(s)	74, 272, 374, 414, 420
TasI	AATT	5 cut(s)	581, 605, 959, 973, 1009
TatI	WGTACW	2 cut(s)	492, 998
TauI	GCSGC	2 cut(s)	282, 710
TfiI	GAWTC	3 cut(s)	55, 433, 844
Tru1I	TTAA	6 cut(s)	258, 497, 768, 807, 857, 939
Tru9I	TTAA	6 cut(s)	258, 497, 768, 807, 857, 939
TscAI	CASTG	3 cut(s)	239, 559, 605
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	5 cut(s)	282, 443, 503, 698, 710
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	958
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	3 cut(s)	239, 559, 605
Vha464I	CTTAAG	2 cut(s)	496, 856
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	3 cut(s)	605, 959, 973
XceI	RCATGY	2 cut(s)	147, 1035
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	5 cut(s)	321, 383, 453, 615, 984
Zsp2I	ATGCAT	1 cut(s)	1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.