Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007530

Physical Location & Seq

Genomic Coordinates Reverse (-)

22427572 .. 22428683

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G181400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCAGCCTTGTTCACCAAGTTTTGTTCTCAAGCTCTCACTATCTTCCTACTACTTCTCCCAGCCTTGTTTTCCCAATCCTATGCCGGAGTCGTTGTGGTTTATTGGGGTCAAAATGGTGGTGAAGGCTCACTCACAGACACATGTAACACTGGAAAATATCGAATTGTAAACATAGGATTTCTCTCAAAATTTGGCAATGGCCAAAAACCTGAAATCAACTTAGCTGGCCACTGTAACCCAGCATCAAACGGCTGCCAAGGAGTGGGGGCTGGCATCAAAAACTGCCAAAGCAAAGGCATCAAGGTCTTGCTTTCGATCGGTGGCGGCGCAGGGAACTATGGACTGTCATCTGATGCTGATGCTAACAGTGTAGCAGACTACCTATGGAACAACTTCTTAGGGGGCCAATCAAACTCAAGGCCTCTAGGCAGCGCCGTTTTGGACGGAATAGATTTCGACATCGAGAAAGGTGGACCTCACTATGATGCACTTGCTAGGAGGTTGTCTGACTACGGCAAAAGAGGCAAAAAAATCTACTTAAGTGCAGCACCACAATGCCCATTTCCTGACCAGTATCTCAATGGCGCCTTGTCCACCGGCCTCTTTGACTATGTTTGGGTTCAATTCTACAACAACCCTCAATGTGAATTTACCACCAGCAACCCCAATGCCTTCAAGAACTCATGGAACAAATGGACCTCCTCCATAAAAGCCGGCCAGTTCTTCGTTGGGCTTCCGGCTTCCCGCCAAGCTGCTGGCAGTGGCTTTGTGAATCCAAATGATCTGAAAAACCAAGTGTTGCCTTTTGTTAAGGGATCTCCCAAGTATGGAGGTGTCATGCTCTATGATAAGTTCAACGATGACAAGAGTGGCTATAGTTCTCAAATTCGAGGCAGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

302

Amino Acids

32.24

Weight (kDa)

8.95

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15680
prunus_persica	Prupe.2G181400_v2.0.a1 Prupe.2G181500_v2.0.a1 Prupe.2G181600_v2.0.a1
pyrus_communis	pycom07g12500 pycom07g12560 pycom07g12610 pycom13g15500 pycom15g35750
rosa_chinensis	RchiOBHm_Chr1g0358401 RchiOBHm_Chr1g0358411
rosa_laevigata	RLG00000027962 RLG00000027963
rosa_multiflora	Rmu_sc0000147.1_g000093 Rmu_sc0002144.1_g000033
rosa_roxburghii	Rroxscaffold_4G00297990
rosa_rugosa	Rorug01G0261500
rosa_samantha	Rh1AG275800 Rh1AG276100 Rh1BG242400 Rh1BG242600 Rh1CG259000 Rh1CG259600
rosa_wichuraiana	Rw1G024540 Rw1G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	265
AciI	CCGC	2 cut(s)	327, 748
AclWI	GGATC	1 cut(s)	826
AcoI	YGGCCR	3 cut(s)	202, 229, 718
AcsI	RAATTY	3 cut(s)	191, 650, 888
AcyI	GRCGYC	1 cut(s)	588
AfiI	CCNNNNNNNGG	2 cut(s)	265, 830
AflII	CTTAAG	1 cut(s)	541
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	626, 679, 859
AluBI	AGCT	3 cut(s)	35, 227, 755
AluI	AGCT	3 cut(s)	35, 227, 755
AlwI	GGATC	1 cut(s)	826
AoxI	GGCC	6 cut(s)	202, 229, 406, 422, 601, 718
ApeKI	GCWGC	5 cut(s)	5, 255, 432, 548, 755
ApoI	RAATTY	3 cut(s)	191, 650, 888
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	3 cut(s)	332, 437, 590
AspS9I	GGNCC	3 cut(s)	406, 476, 699
AsuHPI	GGTGA	2 cut(s)	7, 134
AvaII	GGWCC	2 cut(s)	476, 699
BalI	TGGCCA	2 cut(s)	204, 231
BanI	GGYRCC	1 cut(s)	587
BbvI	GCAGC	5 cut(s)	17, 242, 444, 560, 742
BceAI	ACGGC	3 cut(s)	268, 422, 532
BfaI	CTAG	2 cut(s)	428, 498
BfmI	CTRYAG	1 cut(s)	877
BfoI	RGCGCY	2 cut(s)	438, 591
BfrI	CTTAAG	1 cut(s)	541
BisI	GCNGC	6 cut(s)	6, 256, 328, 433, 549, 756
BlsI	GCNGC	6 cut(s)	7, 257, 329, 434, 550, 757
Bme18I	GGWCC	2 cut(s)	476, 699
BmgT120I	GGNCC	3 cut(s)	406, 476, 699
BmiI	GGNNCC	2 cut(s)	407, 589
BmsI	GCATC	6 cut(s)	254, 285, 309, 346, 352, 478
BpuEI	CTTGAG	2 cut(s)	15, 403
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	259
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 81, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 830
Bse118I	RCCGGY	2 cut(s)	599, 716
Bse1I	ACTGG	3 cut(s)	157, 574, 721
Bse3DI	GCAATG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	265, 830
BseMI	GCAATG	1 cut(s)	205
BseNI	ACTGG	3 cut(s)	157, 574, 721
BseRI	GAGGAG	1 cut(s)	694
BseXI	GCAGC	5 cut(s)	17, 242, 444, 560, 742
BseYI	CCCAGC	2 cut(s)	61, 241
BsgI	GTGCAG	1 cut(s)	567
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	6 cut(s)	204, 231, 408, 424, 603, 720
BshNI	GGYRCC	1 cut(s)	587
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	4 cut(s)	87, 600, 717, 740
BslI	CCNNNNNNNGG	2 cut(s)	265, 830
BsnI	GGCC	6 cut(s)	204, 231, 408, 424, 603, 720
Bsp143I	GATC	3 cut(s)	318, 784, 818
BspACI	CCGC	2 cut(s)	327, 748
BspANI	GGCC	6 cut(s)	204, 231, 408, 424, 603, 720
BspLI	GGNNCC	2 cut(s)	407, 589
BspPI	GGATC	1 cut(s)	826
BspT107I	GGYRCC	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	2 cut(s)	599, 716
BsrI	ACTGG	3 cut(s)	157, 574, 721
BssAI	RCCGGY	2 cut(s)	599, 716
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	318, 784, 818
BssNI	GRCGYC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	236, 348, 371
BstACI	GRCGYC	1 cut(s)	588
BstAFI	CTTAAG	1 cut(s)	541
BstC8I	GCNNGC	4 cut(s)	229, 274, 718, 760
BstDEI	CTNAG	2 cut(s)	223, 400
BstH2I	RGCGCY	2 cut(s)	438, 591
BstHHI	GCGC	3 cut(s)	332, 437, 590
BstKTI	GATC	3 cut(s)	321, 787, 821
BstMBI	GATC	3 cut(s)	318, 784, 818
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	877
BstV1I	GCAGC	5 cut(s)	17, 242, 444, 560, 742
BstX2I	RGATCY	1 cut(s)	818
BstXI	CCANNNNNNTGG	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	818
BsuRI	GGCC	6 cut(s)	204, 231, 408, 424, 603, 720
BtsI	GCAGTG	2 cut(s)	769, 904
BtsIMutI	CAGTG	5 cut(s)	150, 232, 376, 769, 904
Cac8I	GCNNGC	4 cut(s)	229, 274, 718, 760
CfoI	GCGC	3 cut(s)	332, 437, 590
Cfr10I	RCCGGY	2 cut(s)	599, 716
Cfr13I	GGNCC	3 cut(s)	406, 476, 699
CviAII	CATG	3 cut(s)	144, 687, 841
DdeI	CTNAG	2 cut(s)	223, 400
DinI	GGCGCC	1 cut(s)	589
DpnI	GATC	3 cut(s)	320, 786, 820
DpnII	GATC	3 cut(s)	318, 784, 818
EaeI	YGGCCR	3 cut(s)	202, 229, 718
Eco130I	CCWWGG	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	476, 699
EcoT14I	CCWWGG	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	589
EheI	GGCGCC	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	147, 690, 844
FatI	CATG	3 cut(s)	143, 686, 840
FauI	CCCGC	1 cut(s)	755
Fnu4HI	GCNGC	6 cut(s)	6, 256, 328, 433, 549, 756
Fsp4HI	GCNGC	6 cut(s)	6, 256, 328, 433, 549, 756
FspBI	CTAG	2 cut(s)	428, 498
GlaI	GCGC	3 cut(s)	331, 436, 589
GluI	GCNGC	6 cut(s)	6, 256, 328, 433, 549, 756
GsaI	CCCAGC	2 cut(s)	65, 245
HaeII	RGCGCY	2 cut(s)	438, 591
HaeIII	GGCC	6 cut(s)	204, 231, 408, 424, 603, 720
HapII	CCGG	4 cut(s)	87, 600, 717, 740
HhaI	GCGC	3 cut(s)	332, 437, 590
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	3 cut(s)	147, 690, 844
Hin6I	GCGC	3 cut(s)	330, 435, 588
HinP1I	GCGC	3 cut(s)	330, 435, 588
HinfI	GANTC	2 cut(s)	90, 775
HpaII	CCGG	4 cut(s)	87, 600, 717, 740
HphI	GGTGA	2 cut(s)	7, 134
Hpy166II	GTNNAC	4 cut(s)	15, 172, 476, 597
Hpy188I	TCNGA	3 cut(s)	355, 511, 789
Hpy188III	TCNNGA	3 cut(s)	466, 569, 679
Hpy8I	GTNNAC	4 cut(s)	15, 172, 476, 597
HpyAV	CCTTC	2 cut(s)	119, 685
HpyCH4III	ACNGT	3 cut(s)	236, 348, 371
HpyCH4V	TGCA	2 cut(s)	491, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	525
HpyF3I	CTNAG	2 cut(s)	223, 400
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	3 cut(s)	147, 690, 844
HspAI	GCGC	3 cut(s)	330, 435, 588
KasI	GGCGCC	1 cut(s)	587
KroI	GCCGGC	1 cut(s)	716
KroNI	GCCGGC	1 cut(s)	718
Kzo9I	GATC	3 cut(s)	318, 784, 818
Lsp1109I	GCAGC	5 cut(s)	17, 242, 444, 560, 742
LweI	GCATC	6 cut(s)	254, 285, 309, 346, 352, 478
MaeI	CTAG	2 cut(s)	428, 498
MaeIII	GTNAC	2 cut(s)	146, 236
MalI	GATC	3 cut(s)	320, 786, 820
MboI	GATC	3 cut(s)	318, 784, 818
MboII	GAAGA	2 cut(s)	37, 718
MflI	RGATCY	1 cut(s)	818
MlsI	TGGCCA	2 cut(s)	204, 231
MluCI	AATT	5 cut(s)	165, 191, 626, 650, 888
MluNI	TGGCCA	2 cut(s)	204, 231
Mly113I	GGCGCC	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	99
Mox20I	TGGCCA	2 cut(s)	204, 231
MroNI	GCCGGC	1 cut(s)	716
MroXI	GAANNNNTTC	1 cut(s)	395
MscI	TGGCCA	2 cut(s)	204, 231
MseI	TTAA	2 cut(s)	542, 813
MslI	CAYNNNNRTG	2 cut(s)	486, 556
Msp20I	TGGCCA	2 cut(s)	204, 231
MspCI	CTTAAG	1 cut(s)	541
MspI	CCGG	4 cut(s)	87, 600, 717, 740
MwoI	GCNNNNNNNGC	1 cut(s)	525
NaeI	GCCGGC	1 cut(s)	718
NarI	GGCGCC	1 cut(s)	588
NdeII	GATC	3 cut(s)	318, 784, 818
NgoMIV	GCCGGC	1 cut(s)	716
NlaIII	CATG	3 cut(s)	147, 690, 844
NlaIV	GGNNCC	2 cut(s)	407, 589
NspI	RCATGY	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	424
PciI	ACATGT	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	775
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	6 cut(s)	7, 257, 329, 434, 550, 757
Ple19I	CGATCG	1 cut(s)	321
PleI	GAGTC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	98
PscI	ACATGT	1 cut(s)	143
PspFI	CCCAGC	2 cut(s)	61, 241
PspN4I	GGNNCC	2 cut(s)	407, 589
PspPI	GGNCC	3 cut(s)	406, 476, 699
PsuI	RGATCY	1 cut(s)	818
PvuI	CGATCG	1 cut(s)	321
RseI	CAYNNNNRTG	2 cut(s)	486, 556
SaqAI	TTAA	2 cut(s)	542, 813
SatI	GCNGC	6 cut(s)	6, 256, 328, 433, 549, 756
Sau3AI	GATC	3 cut(s)	318, 784, 818
Sau96I	GGNCC	3 cut(s)	406, 476, 699
SchI	GAGTC	1 cut(s)	99
SfaNI	GCATC	6 cut(s)	254, 285, 309, 346, 352, 478
SfcI	CTRYAG	1 cut(s)	877
SfoI	GGCGCC	1 cut(s)	589
SinI	GGWCC	2 cut(s)	476, 699
SmiMI	CAYNNNNRTG	2 cut(s)	486, 556
SmlI	CTYRAG	3 cut(s)	30, 418, 541
SmoI	CTYRAG	3 cut(s)	30, 418, 541
Sse9I	AATT	5 cut(s)	165, 191, 626, 650, 888
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	2 cut(s)	327, 748
SspDI	GGCGCC	1 cut(s)	587
SspMI	CTAG	2 cut(s)	428, 498
StuI	AGGCCT	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	236, 348, 371
TaqI	TCGA	5 cut(s)	163, 317, 459, 465, 892
TasI	AATT	5 cut(s)	165, 191, 626, 650, 888
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	775
Tru1I	TTAA	2 cut(s)	542, 813
Tru9I	TTAA	2 cut(s)	542, 813
TscAI	CASTG	5 cut(s)	157, 239, 376, 769, 904
TseI	GCWGC	5 cut(s)	5, 255, 432, 548, 755
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	5 cut(s)	157, 239, 376, 769, 904
Van91I	CCANNNNNTGG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	541
VpaK11BI	GGWCC	2 cut(s)	476, 699
XapI	RAATTY	3 cut(s)	191, 650, 888
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	2 cut(s)	581, 728
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	2 cut(s)	428, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.