Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007530

Physical Location & Seq

Genomic Coordinates Forward (+)

37109682 .. 37112658

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0261500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGAATCCCCAGCAGCCCTCTGATGTATCGATTGAGTTAAGAATGTGTGAGCATCTAATTGTATATCTTGTTTACGTGCGGAATAGAATACTTGGTCCAAGTGATGATGAACCAACTAGTTATTTTCCGATATGGGAGGACATATTTAGAATATCTTGTGCACTTGCTGTCCTTCTTGATCCACTGTTCTGTTACATTCCTATCATTGATGAGGAACATGTGTGCTACTATTGGCACCAGAAATTGATGTGGACATTTGTTGGTTTACAATCCGTCATAGAACTGTTTTATGCAATGGACATTTTTGTTTTCTGGAAACGAGTTCATCGCAGACGTAATGCTAATAGGACAGTACAAGCGTGCATATTTAAGTGGTTACCTATTATACCTCGCATATATATTTCTCTTCCCATTGCACAGGCAACAGTACTCATAGGAAGATATGCATATAATTGGGATAACTATATTTTTCTAGTTTTTTTCTATCCGGTGCAATATACACTACGGACTTATGGCACCTTTGGACTGATCAAGCAACCTCCTAATATGGAAACTGGAATAGGAAGATGGCTTCAAGCTATACTGGATTTTCTTCCATTCATCATTGCTTCACATTTATTTGGGGCCTTGTGGTACCATTTTGCCGCTGAAAGACATGTAGGTTGTTGGGACAAAGCCTTGAGGGAGATTGAATTTGAAGGATGTGAAGCTCACCATAATTTCTACTGCGGTGGTCCCCCGCTGACTAACATTGAAAACTGCAGCATGAGGACTGATAAACAACGACAGTATCATCCTTATTCCTTCAAGGAAATGGCAACATATCTCAATGCATCATGCCCTATAAATCCAGAAAATACAACAAAGTTCGATTTTGGTATATATCAATATGCTCTTCGATCTGGCTTTACAAGATCACCATATCTTCCACGAAAGTTCCTGCAATCTTTTTGGTGGGGCTTGCGGAATTTGAGTTCTTTTGGCTCAAACCTCCAGACCAGTTTCTATACGTTGGAAATTAGCTTCTCAATTTTGATATCTATAACGGGGCTAGCTCTGTTTTTAGTATATCTCAATGCAAGAGTGCAGGTGTCACAAAAAAGATCTGATCGGATAAAATTACGACGAAAGATGCAAATGATGAATCTAGACATAGATTTGTGGTTAAGTAGAAATTACCTTTCTGGACACAATAAGGAGTTGAAGAAATTGATCATGAAAAACAAAAGACAGATCATGAGTCTTCCGCGCTTGACCTCTCTAAAGAAAGTACCGATGTTCAAAAATATGAATATACGAGTGTTGGAAGCAATTGTTAAACATCTTGAGCCAGTGACTATTACTAAAAACTGCTATATTATTCGAGAGGGGGAACCAGTTTGGAACATGCACTTCATCACGAATGGCACCGCAGTGAGCTACAAAACTGGTAATCATACCAATGTTGGTGGATGTATGAATGATTCCTCAATCATTAAGTGCCTTGGGACGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

499

Amino Acids

58.6

Weight (kDa)

9.25

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15680
prunus_persica	Prupe.2G181400_v2.0.a1 Prupe.2G181500_v2.0.a1 Prupe.2G181600_v2.0.a1
pyrus_communis	pycom07g12500 pycom07g12560 pycom07g12610 pycom13g15500 pycom15g35750
rosa_chinensis	RchiOBHm_Chr1g0358401 RchiOBHm_Chr1g0358411
rosa_laevigata	RLG00000027962 RLG00000027963
rosa_multiflora	Rmu_sc0000147.1_g000093 Rmu_sc0002144.1_g000033
rosa_roxburghii	Rroxscaffold_4G00297990
rosa_rugosa	Rorug01G0261500
rosa_samantha	Rh1AG275800 Rh1AG276100 Rh1BG242400 Rh1BG242600 Rh1CG259000 Rh1CG259600
rosa_wichuraiana	Rw1G024540 Rw1G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1078
Acc36I	ACCTGC	1 cut(s)	1078
Acc65I	GGTACC	1 cut(s)	633
AccB1I	GGYRCC	4 cut(s)	234, 515, 633, 1406
AccII	CGCG	1 cut(s)	1249
AciI	CCGC	7 cut(s)	79, 645, 729, 740, 964, 1247, 1410
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	692, 967
AfaI	GTAC	4 cut(s)	354, 429, 635, 1272
AflIII	ACRYGT	2 cut(s)	217, 655
AgsI	TTSAA	7 cut(s)	575, 692, 698, 755, 808, 1204, 1282
AhlI	ACTAGT	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	1412
AloI	GAACNNNNNNTCC	2 cut(s)	958, 990
AluBI	AGCT	5 cut(s)	578, 710, 1023, 1055, 1419
AluI	AGCT	5 cut(s)	578, 710, 1023, 1055, 1419
Alw21I	GWGCWC	1 cut(s)	163
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	624
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	13, 762
ApoI	RAATTY	2 cut(s)	692, 967
Asp718I	GGTACC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	1251
AspS9I	GGNCC	3 cut(s)	95, 624, 734
AsuHPI	GGTGA	2 cut(s)	704, 909
AsuNHI	GCTAGC	1 cut(s)	1051
AvaII	GGWCC	2 cut(s)	95, 734
BaeGI	GKGCMC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	773, 806
BanI	GGYRCC	4 cut(s)	234, 515, 633, 1406
BbsI	GAAGAC	1 cut(s)	1235
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	25, 774
BccI	CCATC	1 cut(s)	561
BclI	TGATCA	2 cut(s)	528, 1212
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	4 cut(s)	117, 473, 1052, 1148
BfmI	CTRYAG	1 cut(s)	760
BfuAI	ACCTGC	1 cut(s)	1078
BglII	AGATCT	1 cut(s)	1103
BisI	GCNGC	3 cut(s)	14, 645, 763
BlsI	GCNGC	3 cut(s)	15, 646, 764
BmcAI	AGTACT	1 cut(s)	429
Bme18I	GGWCC	2 cut(s)	95, 734
BmgT120I	GGNCC	3 cut(s)	95, 624, 734
BmiI	GGNNCC	7 cut(s)	236, 517, 625, 635, 736, 1374, 1408
BmsI	GCATC	3 cut(s)	61, 842, 1122
BmtI	GCTAGC	1 cut(s)	1055
BpiI	GAAGAC	1 cut(s)	1235
BpmI	CTGGAG	1 cut(s)	977
BpuEI	CTTGAG	2 cut(s)	700, 1346
Bsa29I	ATCGAT	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	1483
BsaWI	WCCGGW	1 cut(s)	487
Bse1I	ACTGG	6 cut(s)	559, 588, 999, 1331, 1376, 1432
Bse3DI	GCAATG	3 cut(s)	300, 411, 603
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	1483
BseGI	GGATG	3 cut(s)	707, 793, 1457
BseMI	GCAATG	3 cut(s)	300, 411, 603
BseNI	ACTGG	6 cut(s)	559, 588, 999, 1331, 1376, 1432
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	25, 774
BseYI	CCCAGC	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	1106
Bsh1236I	CGCG	1 cut(s)	1249
BshFI	GGCC	1 cut(s)	626
BshNI	GGYRCC	4 cut(s)	234, 515, 633, 1406
BshVI	ATCGAT	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	683, 720
BsmFI	GGGAC	2 cut(s)	683, 720
BsnI	GGCC	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	8 cut(s)	178, 528, 899, 914, 1103, 1108, 1212, 1233
BspACI	CCGC	7 cut(s)	79, 645, 729, 740, 964, 1247, 1410
BspANI	GGCC	1 cut(s)	626
BspDI	ATCGAT	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	1249
BspHI	TCATGA	2 cut(s)	1215, 1236
BspLI	GGNNCC	7 cut(s)	236, 517, 625, 635, 736, 1374, 1408
BspMAI	CTGCAG	1 cut(s)	764
BspMI	ACCTGC	1 cut(s)	1078
BspOI	GCTAGC	1 cut(s)	1055
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	900
BspT107I	GGYRCC	4 cut(s)	234, 515, 633, 1406
BsrDI	GCAATG	3 cut(s)	300, 411, 603
BsrI	ACTGG	6 cut(s)	559, 588, 999, 1331, 1376, 1432
BssECI	CCNNGG	1 cut(s)	1483
BssMI	GATC	8 cut(s)	178, 528, 899, 914, 1103, 1108, 1212, 1233
BssT1I	CCWWGG	1 cut(s)	1483
Bst4CI	ACNGT	5 cut(s)	186, 285, 352, 427, 789
Bst6I	CTCTTC	2 cut(s)	411, 900
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	3 cut(s)	361, 962, 1053
BstEII	GGTNACC	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	707, 793, 1457
BstFNI	CGCG	1 cut(s)	1249
BstHHI	GCGC	1 cut(s)	1251
BstKTI	GATC	8 cut(s)	181, 531, 902, 917, 1106, 1111, 1215, 1236
BstMBI	GATC	8 cut(s)	178, 528, 899, 914, 1103, 1108, 1212, 1233
BstNSI	RCATGY	3 cut(s)	221, 659, 1390
BstPI	GGTNACC	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	760
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	1249
BstV1I	GCAGC	2 cut(s)	25, 774
BstV2I	GAAGAC	1 cut(s)	1235
BstX2I	RGATCY	1 cut(s)	1103
BstYI	RGATCY	1 cut(s)	1103
Bsu15I	ATCGAT	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	626
BsuTUI	ATCGAT	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	707, 793, 1457
BtsI	GCAGTG	1 cut(s)	1419
BtsIMutI	CAGTG	3 cut(s)	182, 1338, 1419
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	3 cut(s)	361, 962, 1053
CciI	TCATGA	2 cut(s)	1215, 1236
CfoI	GCGC	1 cut(s)	1251
Cfr13I	GGNCC	3 cut(s)	95, 624, 734
ClaI	ATCGAT	1 cut(s)	29
Csp6I	GTAC	4 cut(s)	353, 428, 634, 1271
CspCI	CAANNNNNGTGG	2 cut(s)	1429, 1464
CviAII	CATG	7 cut(s)	218, 656, 766, 837, 1216, 1237, 1387
CviQI	GTAC	4 cut(s)	353, 428, 634, 1271
DpnI	GATC	8 cut(s)	180, 530, 901, 916, 1105, 1110, 1214, 1235
DpnII	GATC	8 cut(s)	178, 528, 899, 914, 1103, 1108, 1212, 1233
Eam1104I	CTCTTC	2 cut(s)	411, 900
EarI	CTCTTC	2 cut(s)	411, 900
Eco130I	CCWWGG	1 cut(s)	1483
Eco32I	GATATC	1 cut(s)	1038
Eco47I	GGWCC	2 cut(s)	95, 734
Eco91I	GGTNACC	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	624
EcoO65I	GGTNACC	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	1038
EcoT14I	CCWWGG	1 cut(s)	1483
EcoT22I	ATGCAT	2 cut(s)	448, 835
ErhI	CCWWGG	1 cut(s)	1483
FaeI	CATG	7 cut(s)	221, 659, 769, 840, 1219, 1240, 1390
FaqI	GGGAC	2 cut(s)	683, 720
FatI	CATG	7 cut(s)	217, 655, 765, 836, 1215, 1236, 1386
FauI	CCCGC	1 cut(s)	747
FbaI	TGATCA	2 cut(s)	528, 1212
Fnu4HI	GCNGC	3 cut(s)	14, 645, 763
FokI	GGATG	3 cut(s)	714, 780, 1464
Fsp4HI	GCNGC	3 cut(s)	14, 645, 763
FspBI	CTAG	4 cut(s)	117, 473, 1052, 1148
GlaI	GCGC	1 cut(s)	1250
GluI	GCNGC	3 cut(s)	14, 645, 763
GsaI	CCCAGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	977
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	1 cut(s)	488
HhaI	GCGC	1 cut(s)	1251
Hin1II	CATG	7 cut(s)	221, 659, 769, 840, 1219, 1240, 1390
Hin6I	GCGC	1 cut(s)	1249
HinP1I	GCGC	1 cut(s)	1249
HinfI	GANTC	4 cut(s)	4, 1144, 1240, 1463
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	2 cut(s)	704, 909
Hpy166II	GTNNAC	4 cut(s)	73, 161, 252, 266
Hpy188I	TCNGA	4 cut(s)	22, 129, 1108, 1113
Hpy8I	GTNNAC	4 cut(s)	73, 161, 252, 266
Hpy99I	CGWCG	1 cut(s)	1128
HpyAV	CCTTC	3 cut(s)	182, 692, 814
HpyCH4III	ACNGT	5 cut(s)	186, 285, 352, 427, 789
HpyCH4IV	ACGT	3 cut(s)	75, 334, 1010
HpySE526I	ACGT	3 cut(s)	75, 334, 1010
Hsp92II	CATG	7 cut(s)	221, 659, 769, 840, 1219, 1240, 1390
HspAI	GCGC	1 cut(s)	1249
KpnI	GGTACC	1 cut(s)	637
Ksp22I	TGATCA	2 cut(s)	528, 1212
Kzo9I	GATC	8 cut(s)	178, 528, 899, 914, 1103, 1108, 1212, 1233
LguI	GCTCTTC	1 cut(s)	900
Lsp1109I	GCAGC	2 cut(s)	25, 774
LweI	GCATC	3 cut(s)	61, 842, 1122
MaeI	CTAG	4 cut(s)	117, 473, 1052, 1148
MaeII	ACGT	3 cut(s)	75, 334, 1010
MaeIII	GTNAC	4 cut(s)	191, 375, 1092, 1333
MalI	GATC	8 cut(s)	180, 530, 901, 916, 1105, 1110, 1214, 1235
MboI	GATC	8 cut(s)	178, 528, 899, 914, 1103, 1108, 1212, 1233
MboII	GAAGA	8 cut(s)	398, 450, 576, 584, 887, 917, 1216, 1235
MfeI	CAATTG	1 cut(s)	1311
MflI	RGATCY	1 cut(s)	1103
MhlI	GDGCHC	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	1249
MmeI	TCCRAC	2 cut(s)	993, 1284
Mph1103I	ATGCAT	2 cut(s)	448, 835
MseI	TTAA	5 cut(s)	38, 369, 1166, 1317, 1476
MslI	CAYNNNNRTG	2 cut(s)	1412, 1440
MspA1I	CMGCKG	2 cut(s)	647, 742
MspI	CCGG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	1311
MvnI	CGCG	1 cut(s)	1249
NdeII	GATC	8 cut(s)	178, 528, 899, 914, 1103, 1108, 1212, 1233
NheI	GCTAGC	1 cut(s)	1051
NlaIII	CATG	7 cut(s)	221, 659, 769, 840, 1219, 1240, 1390
NlaIV	GGNNCC	7 cut(s)	236, 517, 625, 635, 736, 1374, 1408
NmuCI	GTSAC	2 cut(s)	1092, 1333
NsiI	ATGCAT	2 cut(s)	448, 835
NspI	RCATGY	3 cut(s)	221, 659, 1390
OliI	CACNNNNGTG	1 cut(s)	1412
PagI	TCATGA	2 cut(s)	1215, 1236
PaqCI	CACCTGC	1 cut(s)	1078
PciI	ACATGT	2 cut(s)	217, 655
PciSI	GCTCTTC	1 cut(s)	900
PfeI	GAWTC	3 cut(s)	4, 1144, 1463
PkrI	GCNGC	3 cut(s)	15, 646, 764
PleI	GAGTC	1 cut(s)	1248
PpsI	GAGTC	1 cut(s)	1248
Ppu21I	YACGTR	1 cut(s)	76
PscI	ACATGT	2 cut(s)	217, 655
PspEI	GGTNACC	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	7 cut(s)	236, 517, 625, 635, 736, 1374, 1408
PspPI	GGNCC	3 cut(s)	95, 624, 734
PstI	CTGCAG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	1103
RsaI	GTAC	4 cut(s)	354, 429, 635, 1272
RsaNI	GTAC	4 cut(s)	353, 428, 634, 1271
RseI	CAYNNNNRTG	2 cut(s)	1412, 1440
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	5 cut(s)	38, 369, 1166, 1317, 1476
SatI	GCNGC	3 cut(s)	14, 645, 763
Sau3AI	GATC	8 cut(s)	178, 528, 899, 914, 1103, 1108, 1212, 1233
Sau96I	GGNCC	3 cut(s)	95, 624, 734
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	1 cut(s)	1249
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	3 cut(s)	61, 842, 1122
SfcI	CTRYAG	1 cut(s)	760
SinI	GGWCC	2 cut(s)	95, 734
SmiMI	CAYNNNNRTG	2 cut(s)	1412, 1440
SmlI	CTYRAG	2 cut(s)	679, 1325
SmoI	CTYRAG	2 cut(s)	679, 1325
SpeI	ACTAGT	1 cut(s)	116
SsiI	CCGC	7 cut(s)	79, 645, 729, 740, 964, 1247, 1410
SspMI	CTAG	4 cut(s)	117, 473, 1052, 1148
StyI	CCWWGG	1 cut(s)	1483
TaaI	ACNGT	5 cut(s)	186, 285, 352, 427, 789
TaiI	ACGT	3 cut(s)	78, 337, 1013
TaqI	TCGA	4 cut(s)	29, 870, 898, 1363
TatI	WGTACW	2 cut(s)	352, 427
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	3 cut(s)	4, 1144, 1463
Tru1I	TTAA	5 cut(s)	38, 369, 1166, 1317, 1476
Tru9I	TTAA	5 cut(s)	38, 369, 1166, 1317, 1476
TscAI	CASTG	3 cut(s)	189, 1338, 1419
TseFI	GTSAC	2 cut(s)	1092, 1333
TseI	GCWGC	2 cut(s)	13, 762
Tsp45I	GTSAC	2 cut(s)	1092, 1333
TspDTI	ATGAA	9 cut(s)	17, 123, 314, 589, 1157, 1232, 1304, 1384, 1472
TspGWI	ACGGA	2 cut(s)	262, 520
TspRI	CASTG	3 cut(s)	189, 1338, 1419
VneI	GTGCAC	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	95, 734
XapI	RAATTY	2 cut(s)	692, 967
XbaI	TCTAGA	1 cut(s)	1147
XceI	RCATGY	3 cut(s)	221, 659, 1390
XspI	CTAG	4 cut(s)	117, 473, 1052, 1148
ZrmI	AGTACT	1 cut(s)	429
Zsp2I	ATGCAT	2 cut(s)	448, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.