Rh1BG242400

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007530
Physical Location & Seq
Reverse (-)
36937833 .. 36939251
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG242400.1

Sequence Viewer

Length: 906 bp
ATGGCTGCCATGTCCACCGAGTCGTGCTCTCAAGATCTCACTGTCTTACTAGTAATCCTCCATATCTTTGTCTCAAACTCTTACGCCGGATCCATTGTAGTTTACTGGGGCCAAAATAGGGGAGAAGGCACACTCACAGCAACATGTGACACAGGAAGATATCGTATCGTAAACATAGCATTCCTCTCACAGTATAGCAATGGCCAAACACCTCAGATCAATTTAGCCGGTCACTGCGATCCAAGATCAAATGGTTGCGTAAAAGTGAGCACAGGCATCAAAAATTGCCAAAACAAAGGCATCAAGGTCCTCCTTTCCATTGGTGGTCATGCAGGGAACTATGGATTATCATCAGATGCCGATGCTGGGAAAGTAGCAGACTACATATGGAATAACTTCTTGGGAGGTCAATCGAGCTCAAGGCCTCTAGGCGACGCCGTTTTGGACGGGGTAGATTTCGACATCGAGAAAGGCGGACCCCACTATGATGCGCTTGCTAGGCAGTTGTCTCAGTATAGCCAAAGAGGGAGGAAAGTGTACTTAGGAGCAGCACCGCAGTACCCATTTCCTGACCAGTATGTAAATAGCGCATTGTCGACTGGCTTATTTGACTATGTTTGGGTTCAATTCTACAACAATCCACAATGTGAATTCACCTCGAGCAATCCTAATGCCTTTAGGAACTCTTGGAATAAGTGGACATCATCTATACAAGCCAATCAATTCTTTGTTGGGCTTCCAGCTTCTACAGCAGCTGCTAGGAATGGTTATGTGCCTACAGCTGATCTGATAAACCAAGTGTTGCCTTTTGTTAAGAAGTCTCCCAAATATGGAGGTATCATGCTCTATGATAGGTTTGGAGATGATAAGACTGGATACAGTTCTAAAGTTATAGGCAGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

301

Amino Acids

32.69

Weight (kDa)

8.43

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 32 - 251 7.2e-21 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 596
AciI CCGC 2 cut(s) 474, 554
AclWI GGATC 3 cut(s) 84, 97, 233
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 650
AcyI GRCGYC 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 647
AfaI GTAC 2 cut(s) 539, 560
AfiI CCNNNNNNNGG 3 cut(s) 118, 366, 830
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 1 cut(s) 626
AhlI ACTAGT 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 4 cut(s) 417, 743, 755, 782
AluI AGCT 4 cut(s) 417, 743, 755, 782
Alw21I GWGCWC 3 cut(s) 29, 272, 419
Alw26I GTCTC 3 cut(s) 76, 513, 825
AlwI GGATC 3 cut(s) 84, 97, 233
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 1 cut(s) 658
AoxI GGCC 3 cut(s) 109, 202, 422
ApeKI GCWGC 4 cut(s) 5, 548, 752, 755
ApoI RAATTY 1 cut(s) 650
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 2 cut(s) 493, 590
AspS9I GGNCC 3 cut(s) 109, 307, 476
AsuHPI GGTGA 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 2 cut(s) 307, 476
BaeI ACNNNNGTAYC 2 cut(s) 542, 575
BalI TGGCCA 1 cut(s) 204
BamHI GGATCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 419
Bbv12I GWGCWC 3 cut(s) 29, 272, 419
BbvI GCAGC 3 cut(s) 560, 742, 764
BceAI ACGGC 1 cut(s) 422
BciVI GTATCC 1 cut(s) 869
BcoDI GTCTC 3 cut(s) 76, 513, 825
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 4 cut(s) 50, 428, 498, 759
BfmI CTRYAG 2 cut(s) 747, 777
BfuI GTATCC 1 cut(s) 869
BglII AGATCT 1 cut(s) 34
BisI GCNGC 4 cut(s) 6, 549, 753, 756
BlsI GCNGC 4 cut(s) 7, 550, 754, 757
Bme18I GGWCC 2 cut(s) 307, 476
BmeT110I CYCGRG 1 cut(s) 658
BmgT120I GGNCC 3 cut(s) 109, 307, 476
BmiI GGNNCC 3 cut(s) 91, 110, 478
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 5 cut(s) 285, 309, 346, 352, 478
BmuI ACTGGG 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpuEI CTTGAG 2 cut(s) 15, 403
BsaBI GATNNNNATC 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 435
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 366, 830
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 4 cut(s) 110, 574, 604, 877
Bse3DI GCAATG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 118, 366, 830
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 227, 524
BseNI ACTGG 4 cut(s) 110, 574, 604, 877
BseXI GCAGC 3 cut(s) 560, 742, 764
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 3 cut(s) 111, 204, 424
BsiHKAI GWGCWC 3 cut(s) 29, 272, 419
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 2 cut(s) 87, 228
BslI CCNNNNNNNGG 3 cut(s) 118, 366, 830
BsmAI GTCTC 3 cut(s) 76, 513, 825
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 3 cut(s) 111, 204, 424
BsoBI CYCGRG 1 cut(s) 658
Bsp1286I GDGCHC 3 cut(s) 29, 272, 419
Bsp143I GATC 6 cut(s) 34, 89, 216, 238, 245, 784
BspACI CCGC 2 cut(s) 474, 554
BspANI GGCC 3 cut(s) 111, 204, 424
BspCNI CTCAG 2 cut(s) 226, 523
BspLI GGNNCC 3 cut(s) 91, 110, 478
BspPI GGATC 3 cut(s) 84, 97, 233
BsrDI GCAATG 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 4 cut(s) 110, 574, 604, 877
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 6 cut(s) 34, 89, 216, 238, 245, 784
BssNI GRCGYC 1 cut(s) 435
Bst4CI ACNGT 3 cut(s) 43, 192, 881
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 213, 510, 541
BstHHI GCGC 2 cut(s) 493, 590
BstKTI GATC 6 cut(s) 37, 92, 219, 241, 248, 787
BstMAI GTCTC 3 cut(s) 76, 513, 825
BstMBI GATC 6 cut(s) 34, 89, 216, 238, 245, 784
BstMWI GCNNNNNNNGC 2 cut(s) 499, 749
BstNSI RCATGY 1 cut(s) 147
BstSFI CTRYAG 2 cut(s) 747, 777
BstV1I GCAGC 3 cut(s) 560, 742, 764
BstX2I RGATCY 2 cut(s) 34, 89
BstYI RGATCY 2 cut(s) 34, 89
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 3 cut(s) 111, 204, 424
BtsI GCAGTG 2 cut(s) 232, 904
BtsIMutI CAGTG 3 cut(s) 39, 232, 904
Cac8I GCNNGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 2 cut(s) 493, 590
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 109, 307, 476
CseI GACGC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 538, 559
CviAII CATG 4 cut(s) 10, 144, 329, 841
CviQI GTAC 2 cut(s) 538, 559
DdeI CTNAG 3 cut(s) 213, 510, 541
DpnI GATC 6 cut(s) 36, 91, 218, 240, 247, 786
DpnII GATC 6 cut(s) 34, 89, 216, 238, 245, 784
DraIII CACNNNGTG 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 202
EciI GGCGGA 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 419
Eco32I GATATC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 307, 476
Eco53kI GAGCTC 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 658
EcoICRI GAGCTC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 650
EcoRV GATATC 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 419
FaeI CATG 4 cut(s) 13, 147, 332, 844
FatI CATG 4 cut(s) 9, 143, 328, 840
FauNDI CATATG 1 cut(s) 386
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 4 cut(s) 6, 549, 753, 756
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 4 cut(s) 6, 549, 753, 756
FspBI CTAG 4 cut(s) 50, 428, 498, 759
GlaI GCGC 2 cut(s) 492, 589
GluI GCNGC 4 cut(s) 6, 549, 753, 756
GsaI CCCAGC 1 cut(s) 369
HaeIII GGCC 3 cut(s) 111, 204, 424
HapII CCGG 2 cut(s) 87, 228
HgaI GACGC 1 cut(s) 443
HhaI GCGC 2 cut(s) 493, 590
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 4 cut(s) 13, 147, 332, 844
Hin6I GCGC 2 cut(s) 491, 588
HinP1I GCGC 2 cut(s) 491, 588
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 87, 228
HphI GGTGA 1 cut(s) 646
Hpy166II GTNNAC 6 cut(s) 15, 103, 172, 538, 597, 699
Hpy188I TCNGA 3 cut(s) 216, 355, 789
Hpy188III TCNNGA 3 cut(s) 32, 466, 569
Hpy8I GTNNAC 6 cut(s) 15, 103, 172, 538, 597, 699
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 3 cut(s) 43, 192, 881
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 499, 749
HpyF3I CTNAG 3 cut(s) 213, 510, 541
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 4 cut(s) 13, 147, 332, 844
HspAI GCGC 2 cut(s) 491, 588
Kzo9I GATC 6 cut(s) 34, 89, 216, 238, 245, 784
LmnI GCTCC 1 cut(s) 545
Lsp1109I GCAGC 3 cut(s) 560, 742, 764
LweI GCATC 5 cut(s) 285, 309, 346, 352, 478
MaeI CTAG 4 cut(s) 50, 428, 498, 759
MaeIII GTNAC 2 cut(s) 146, 230
MalI GATC 6 cut(s) 36, 91, 218, 240, 247, 786
MboI GATC 6 cut(s) 34, 89, 216, 238, 245, 784
MboII GAAGA 1 cut(s) 168
MflI RGATCY 2 cut(s) 34, 89
MhlI GDGCHC 3 cut(s) 29, 272, 419
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 5 cut(s) 220, 283, 626, 650, 722
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 204
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 755, 782
MspI CCGG 2 cut(s) 87, 228
Mva1269I GAATGC 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 499, 749
NdeI CATATG 1 cut(s) 386
NdeII GATC 6 cut(s) 34, 89, 216, 238, 245, 784
NlaIII CATG 4 cut(s) 13, 147, 332, 844
NlaIV GGNNCC 3 cut(s) 91, 110, 478
NmuCI GTSAC 2 cut(s) 146, 230
NspI RCATGY 1 cut(s) 147
PaeR7I CTCGAG 1 cut(s) 658
PceI AGGCCT 1 cut(s) 424
PciI ACATGT 1 cut(s) 143
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 395
PkrI GCNGC 4 cut(s) 7, 550, 754, 757
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PpuMI RGGWCCY 1 cut(s) 307
PscI ACATGT 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 365
PspN4I GGNNCC 3 cut(s) 91, 110, 478
PspPI GGNCC 3 cut(s) 109, 307, 476
PspPPI RGGWCCY 1 cut(s) 307
PspXI VCTCGAGB 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 2 cut(s) 34, 89
PvuII CAGCTG 2 cut(s) 755, 782
RsaI GTAC 2 cut(s) 539, 560
RsaNI GTAC 2 cut(s) 538, 559
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 1 cut(s) 419
SalI GTCGAC 1 cut(s) 595
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 4 cut(s) 6, 549, 753, 756
Sau3AI GATC 6 cut(s) 34, 89, 216, 238, 245, 784
Sau96I GGNCC 3 cut(s) 109, 307, 476
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 3 cut(s) 29, 272, 419
SfaNI GCATC 5 cut(s) 285, 309, 346, 352, 478
SfcI CTRYAG 2 cut(s) 747, 777
Sfr274I CTCGAG 1 cut(s) 658
SinI GGWCC 2 cut(s) 307, 476
SlaI CTCGAG 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 3 cut(s) 30, 418, 658
SmoI CTYRAG 3 cut(s) 30, 418, 658
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 5 cut(s) 220, 283, 626, 650, 722
SseBI AGGCCT 1 cut(s) 424
SsiI CCGC 2 cut(s) 474, 554
SspMI CTAG 4 cut(s) 50, 428, 498, 759
SstI GAGCTC 1 cut(s) 419
StuI AGGCCT 1 cut(s) 424
TaaI ACNGT 3 cut(s) 43, 192, 881
TaqI TCGA 5 cut(s) 413, 459, 465, 596, 659
TasI AATT 5 cut(s) 220, 283, 626, 650, 722
TatI WGTACW 1 cut(s) 537
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 3 cut(s) 46, 239, 904
TseFI GTSAC 2 cut(s) 146, 230
TseI GCWGC 4 cut(s) 5, 548, 752, 755
Tsp45I GTSAC 2 cut(s) 146, 230
TspRI CASTG 3 cut(s) 46, 239, 904
VpaK11BI GGWCC 2 cut(s) 307, 476
XapI RAATTY 1 cut(s) 650
XceI RCATGY 1 cut(s) 147
XhoI CTCGAG 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 596
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 4 cut(s) 50, 428, 498, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.