RchiOBHm_Chr1g0358411

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007530
Physical Location & Seq
Reverse (-)
50524302 .. 50525182
881 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58358

Sequence Viewer

Length: 774 bp
ATGGCTGCCTTGTTCGCCAAGTTTTGTTCTCAAGCTGTCATTATTTTCCTTCTCATTGTCCCTTCCTTGGTTTCCAAGTCATGTGCTGCACGCATTGTGGTTTACTGGGGCCAAAATGAAGGTGAAGCTGGTCACTGTGATCCAGCATCCAATGGCTGCCAAGGCATCAGCAAGGGAGTTCGAAACTGCCAAAACGAAGGGATTAAGGTCCTGATTTCAATTGGTGGTTCCAATGGGAGCTACACACTATCAGATGCAGATGATGCCAGGCGTGTAGCAGACTACATATGGAATAACTTCTTAGGGGGGAAATCAAACTCAAGGCCTTTAGGCGATGCTGTTTTAGATGGTGTGGATTTCGACATTGAGAAGGGCGAACCTCACTATGCTGCACTGGCTAGGAAGTTATCCGAGTATAGCGCAAGTAGCCAAAAAGTGTTATTATCTGCAGCACCACAATGCCCATTTTCTGACCAGAAACTCAATGGTGCATTAACTACAGGCCTATTTGACTATGTTTGGGTTCAATTCTACAACAACCCACAATGTGAATATAGCTCTAGCAATTTTGATCCCTTCAAGAACTCATGGAACCAATGGAACACCATAGACGCTAGATTGTTCTTTGTCGGGCGTCCAGCTTCACATGCAGCTGCTGGCAGTGGGTATGTGCCTTCAAATGATATGATAAACCAGGTGTTGCCTTTTGTTAAGATGTCTGCCAAGTATGGAGGTGTCATGCTCTATGATAGGTTTGAAGATAAATCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

257

Amino Acids

28.02

Weight (kDa)

5.92

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 40 - 199 2.9e-18 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 134, 566
AcyI GRCGYC 1 cut(s) 634
AdeI CACNNNGTG 1 cut(s) 548
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 5 cut(s) 219, 527, 580, 678, 758
AjnI CCWGG 2 cut(s) 266, 693
AluBI AGCT 6 cut(s) 35, 128, 240, 558, 641, 653
AluI AGCT 6 cut(s) 35, 128, 240, 558, 641, 653
AlwI GGATC 2 cut(s) 134, 566
AlwNI CAGNNNCTG 1 cut(s) 656
AoxI GGCC 3 cut(s) 109, 323, 502
ApeKI GCWGC 7 cut(s) 5, 86, 156, 389, 449, 650, 653
Asp700I GAANNNNTTC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 2 cut(s) 109, 208
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 208
BbvI GCAGC 6 cut(s) 73, 143, 376, 461, 640, 662
BccI CCATC 1 cut(s) 341
BciT130I CCWGG 2 cut(s) 268, 695
BfaI CTAG 3 cut(s) 399, 561, 615
BfmI CTRYAG 2 cut(s) 447, 498
BisI GCNGC 7 cut(s) 6, 87, 157, 390, 450, 651, 654
BlsI GCNGC 7 cut(s) 7, 88, 158, 391, 451, 652, 655
Bme1390I CCNGG 2 cut(s) 268, 695
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 109, 208
BmiI GGNNCC 3 cut(s) 110, 229, 593
BmrFI CCNGG 2 cut(s) 268, 695
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 5 cut(s) 155, 174, 244, 253, 325
BmuI ACTGGG 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 181
BpuEI CTTGAG 2 cut(s) 15, 304
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 2 cut(s) 66, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 110, 399
BseBI CCWGG 2 cut(s) 268, 695
BseDI CCNNGG 2 cut(s) 66, 160
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 67
BseNI ACTGG 2 cut(s) 110, 399
BseXI GCAGC 6 cut(s) 73, 143, 376, 461, 640, 662
BsgI GTGCAG 2 cut(s) 72, 375
BshFI GGCC 3 cut(s) 111, 325, 504
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 3 cut(s) 111, 325, 504
Bsp119I TTCGAA 1 cut(s) 181
Bsp143I GATC 2 cut(s) 139, 571
BspANI GGCC 3 cut(s) 111, 325, 504
BspLI GGNNCC 3 cut(s) 110, 229, 593
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 134, 566
BspT104I TTCGAA 1 cut(s) 181
BsrI ACTGG 2 cut(s) 110, 399
BssECI CCNNGG 2 cut(s) 66, 160
BssMI GATC 2 cut(s) 139, 571
BssNI GRCGYC 1 cut(s) 634
BssT1I CCWWGG 2 cut(s) 66, 160
Bst2UI CCWGG 2 cut(s) 268, 695
Bst4CI ACNGT 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 634
BstAPI GCANNNNNTGC 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 91, 658
BstDEI CTNAG 1 cut(s) 301
BstF5I GGATG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 2 cut(s) 142, 574
BstMBI GATC 2 cut(s) 139, 571
BstMWI GCNNNNNNNGC 6 cut(s) 14, 162, 263, 395, 426, 647
BstNI CCWGG 2 cut(s) 268, 695
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 2 cut(s) 266, 693
BstSFI CTRYAG 2 cut(s) 447, 498
BstV1I GCAGC 6 cut(s) 73, 143, 376, 461, 640, 662
BsuRI GGCC 3 cut(s) 111, 325, 504
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 3 cut(s) 133, 392, 667
Cac8I GCNNGC 2 cut(s) 91, 658
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 109, 208
CseI GACGC 2 cut(s) 620, 623
CsiI ACCWGGT 1 cut(s) 693
CviAII CATG 4 cut(s) 81, 588, 647, 739
DdeI CTNAG 1 cut(s) 301
DpnI GATC 2 cut(s) 141, 573
DpnII GATC 2 cut(s) 139, 571
DraIII CACNNNGTG 1 cut(s) 548
Eco130I CCWWGG 2 cut(s) 66, 160
Eco147I AGGCCT 2 cut(s) 325, 504
Eco47I GGWCC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 266, 693
EcoT14I CCWWGG 2 cut(s) 66, 160
ErhI CCWWGG 2 cut(s) 66, 160
FaeI CATG 4 cut(s) 84, 591, 650, 742
FaqI GGGAC 1 cut(s) 44
FatI CATG 4 cut(s) 80, 587, 646, 738
FauNDI CATATG 1 cut(s) 287
Fnu4HI GCNGC 7 cut(s) 6, 87, 157, 390, 450, 651, 654
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 7 cut(s) 6, 87, 157, 390, 450, 651, 654
FspBI CTAG 3 cut(s) 399, 561, 615
GlaI GCGC 1 cut(s) 421
GluI GCNGC 7 cut(s) 6, 87, 157, 390, 450, 651, 654
HaeIII GGCC 3 cut(s) 111, 325, 504
HgaI GACGC 2 cut(s) 620, 623
HhaI GCGC 1 cut(s) 422
Hin1I GRCGYC 1 cut(s) 634
Hin1II CATG 4 cut(s) 84, 591, 650, 742
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 253, 412, 472
Hpy188III TCNNGA 2 cut(s) 211, 580
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 7 cut(s) 59, 72, 113, 191, 364, 586, 684
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 6 cut(s) 89, 257, 392, 449, 491, 650
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 162, 263, 395, 426, 647
HpyF3I CTNAG 1 cut(s) 301
Hsp92I GRCGYC 1 cut(s) 634
Hsp92II CATG 4 cut(s) 84, 591, 650, 742
HspAI GCGC 1 cut(s) 420
Kzo9I GATC 2 cut(s) 139, 571
LmnI GCTCC 1 cut(s) 237
Lsp1109I GCAGC 6 cut(s) 73, 143, 376, 461, 640, 662
LweI GCATC 5 cut(s) 155, 174, 244, 253, 325
MabI ACCWGGT 1 cut(s) 693
MaeI CTAG 3 cut(s) 399, 561, 615
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 141, 573
MboI GATC 2 cut(s) 139, 571
MboII GAAGA 1 cut(s) 770
MfeI CAATTG 1 cut(s) 219
MluCI AATT 4 cut(s) 219, 527, 565, 769
MnlI CCTC 2 cut(s) 390, 725
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 4 cut(s) 204, 494, 711, 772
MslI CAYNNNNRTG 1 cut(s) 457
MspA1I CMGCKG 1 cut(s) 653
MspR9I CCNGG 2 cut(s) 268, 695
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 2 cut(s) 268, 695
MwoI GCNNNNNNNGC 6 cut(s) 14, 162, 263, 395, 426, 647
NdeI CATATG 1 cut(s) 287
NdeII GATC 2 cut(s) 139, 571
NlaIII CATG 4 cut(s) 84, 591, 650, 742
NlaIV GGNNCC 3 cut(s) 110, 229, 593
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 650
NspV TTCGAA 1 cut(s) 181
PceI AGGCCT 2 cut(s) 325, 504
PdmI GAANNNNTTC 1 cut(s) 296
PkrI GCNGC 7 cut(s) 7, 88, 158, 391, 451, 652, 655
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 266, 693
PspGI CCWGG 2 cut(s) 266, 693
PspN4I GGNNCC 3 cut(s) 110, 229, 593
PspPI GGNCC 2 cut(s) 109, 208
PspPPI RGGWCCY 1 cut(s) 208
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 653
RseI CAYNNNNRTG 1 cut(s) 457
SaqAI TTAA 4 cut(s) 204, 494, 711, 772
SatI GCNGC 7 cut(s) 6, 87, 157, 390, 450, 651, 654
Sau3AI GATC 2 cut(s) 139, 571
Sau96I GGNCC 2 cut(s) 109, 208
ScrFI CCNGG 2 cut(s) 268, 695
SexAI ACCWGGT 1 cut(s) 693
SfaNI GCATC 5 cut(s) 155, 174, 244, 253, 325
SfcI CTRYAG 2 cut(s) 447, 498
SfuI TTCGAA 1 cut(s) 181
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 2 cut(s) 30, 319
SmoI CTYRAG 2 cut(s) 30, 319
Sse9I AATT 4 cut(s) 219, 527, 565, 769
SseBI AGGCCT 2 cut(s) 325, 504
SspMI CTAG 3 cut(s) 399, 561, 615
StuI AGGCCT 2 cut(s) 325, 504
StyD4I CCNGG 2 cut(s) 266, 693
StyI CCWWGG 2 cut(s) 66, 160
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 181, 360
TasI AATT 4 cut(s) 219, 527, 565, 769
Tru1I TTAA 4 cut(s) 204, 494, 711, 772
Tru9I TTAA 4 cut(s) 204, 494, 711, 772
TscAI CASTG 3 cut(s) 140, 399, 667
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 7 cut(s) 5, 86, 156, 389, 449, 650, 653
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 3 cut(s) 140, 399, 667
VpaK11BI GGWCC 1 cut(s) 208
XceI RCATGY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 3 cut(s) 399, 561, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.