Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007530

Physical Location & Seq

Genomic Coordinates Reverse (-)

22441607 .. 22442509

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G181600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTGCCTTCTTTACCAAGTTTTGTTCTCAAGCTGCCATAGTCTTCCTATTGGTTCTCCCTTCCTTGGTTTCCAAATCAGATGCCGGGAGCATTGTAGTTTATTGGGGCCAAAATGGTGGGGAGGGCACCCTAACAGAAACATGTAACACTGGAAGATACCAAATTGTCAACATAGGGTTCCTCTCAAAATTTGGCAGAGGCCAAGCACCTGAGATCAACCTGGCTGGCCACTGTAACCCGAAGTCAAATGGTTGCCATAGAGCGAGTATTGGCATCAAAAACTGCCAAAGGAAGGGGATTAAGGTCCTGCTTTCGATTGGTGGTGGTTTTGGGAGCTATGGGCTATCATCTGAAAATGATGCTAAGAATGTAGCCAACTACATATGGAACAACTTCTTAGGGGGGAGATCAAATTCAAGGCCTCTAGGTGATGCCATATTGGACGGCGTAGATTTCGACATTGAGAAAGGCGGACCTCATTATGTTACACTTGCTAGAATGTTGGCTGCGCATAGCACAAGAGGCAGAAAAGTGTACTTATCAGCAGCACCACAATGCCCATTTCCTGACCAGCATCTCAATGCTGCATTATCCACCGGTCTGTTTGACTATGTTTGGGTTCAGTTCTACAACAACCCACAGTGTGAATTTAGCTCTAGAAACGCCAATGCCTTCAAGAGATCATGGAACCGATGGAGCTCCTCTATACGTGCCAAAATCTTTGTTGGGCTTCCAGCTTCGCGCGCAGTTGTTGTCAGTGGTTTCGTGCCTGCAAATGATCTGATAAACGAAGTGTTACCTTTTGTTAAGAGGTCTCCCAAATATGGCGGTGTCATGCTCTATAACAAGTTCAATGATGACAAGAGTGGCTATAGTCCTAAAATCAGAGGCAGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

301

Amino Acids

32.71

Weight (kDa)

9.68

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15680
prunus_persica	Prupe.2G181400_v2.0.a1 Prupe.2G181500_v2.0.a1 Prupe.2G181600_v2.0.a1
pyrus_communis	pycom07g12500 pycom07g12560 pycom07g12610 pycom13g15500 pycom15g35750
rosa_chinensis	RchiOBHm_Chr1g0358401 RchiOBHm_Chr1g0358411
rosa_laevigata	RLG00000027962 RLG00000027963
rosa_multiflora	Rmu_sc0000147.1_g000093 Rmu_sc0002144.1_g000033
rosa_roxburghii	Rroxscaffold_4G00297990
rosa_rugosa	Rorug01G0261500
rosa_samantha	Rh1AG275800 Rh1AG276100 Rh1BG242400 Rh1BG242600 Rh1CG259000 Rh1CG259600
rosa_wichuraiana	Rw1G024540 Rw1G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	128
AccII	CGCG	2 cut(s)	745, 747
AciI	CCGC	2 cut(s)	474, 831
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	3 cut(s)	191, 415, 650
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	3 cut(s)	67, 295, 827
AflIII	ACRYGT	1 cut(s)	143
AgeI	ACCGGT	1 cut(s)	599
AgsI	TTSAA	3 cut(s)	420, 679, 856
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	5 cut(s)	35, 339, 657, 702, 740
AluI	AGCT	5 cut(s)	35, 339, 657, 702, 740
Alw21I	GWGCWC	1 cut(s)	704
Alw26I	GTCTC	1 cut(s)	822
AoxI	GGCC	4 cut(s)	109, 202, 229, 422
ApeKI	GCWGC	5 cut(s)	5, 35, 509, 548, 587
ApoI	RAATTY	3 cut(s)	191, 415, 650
AsiGI	ACCGGT	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	3 cut(s)	514, 747, 749
AspS9I	GGNCC	3 cut(s)	109, 307, 476
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	307, 476
BaeGI	GKGCMC	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	704
BbvI	GCAGC	4 cut(s)	22, 496, 560, 574
BccI	CCATC	1 cut(s)	690
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	3 cut(s)	428, 498, 660
BfmI	CTRYAG	1 cut(s)	874
BisI	GCNGC	5 cut(s)	6, 36, 510, 549, 588
BlsI	GCNGC	5 cut(s)	7, 37, 511, 550, 589
Bme1390I	CCNGG	2 cut(s)	88, 224
Bme18I	GGWCC	2 cut(s)	307, 476
BmgT120I	GGNCC	3 cut(s)	109, 307, 476
BmiI	GGNNCC	4 cut(s)	110, 130, 182, 692
BmrFI	CCNGG	2 cut(s)	88, 224
BmsI	GCATC	5 cut(s)	73, 285, 352, 424, 586
BpiI	GAAGAC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	713
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 295, 827
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	67, 295, 827
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	157
BsePI	GCGCGC	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	694
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	4 cut(s)	22, 496, 560, 574
Bsh1236I	CGCG	2 cut(s)	745, 747
BshFI	GGCC	4 cut(s)	111, 204, 231, 424
BshNI	GGYRCC	1 cut(s)	128
BshTI	ACCGGT	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	87, 600
BslI	CCNNNNNNNGG	3 cut(s)	67, 295, 827
BsmAI	GTCTC	1 cut(s)	822
BsnI	GGCC	4 cut(s)	111, 204, 231, 424
Bso31I	GGTCTC	1 cut(s)	822
Bsp1286I	GDGCHC	2 cut(s)	131, 704
Bsp143I	GATC	4 cut(s)	216, 410, 683, 781
BspACI	CCGC	2 cut(s)	474, 831
BspANI	GGCC	4 cut(s)	111, 204, 231, 424
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	745, 747
BspLI	GGNNCC	4 cut(s)	110, 130, 182, 692
BspT107I	GGYRCC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	822
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	1 cut(s)	66
BssHII	GCGCGC	1 cut(s)	745
BssMI	GATC	4 cut(s)	216, 410, 683, 781
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	236, 645
BstBAI	YACGTR	1 cut(s)	713
BstC8I	GCNNGC	3 cut(s)	229, 747, 774
BstDEI	CTNAG	3 cut(s)	213, 366, 400
BstFNI	CGCG	2 cut(s)	745, 747
BstHHI	GCGC	3 cut(s)	514, 747, 749
BstKTI	GATC	4 cut(s)	219, 413, 686, 784
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	4 cut(s)	216, 410, 683, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	525, 746
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	86, 222
BstSFI	CTRYAG	1 cut(s)	874
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	2 cut(s)	745, 747
BstV1I	GCAGC	4 cut(s)	22, 496, 560, 574
BstV2I	GAAGAC	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuRI	GGCC	4 cut(s)	111, 204, 231, 424
BtsIMutI	CAGTG	4 cut(s)	150, 232, 650, 766
Cac8I	GCNNGC	3 cut(s)	229, 747, 774
CfoI	GCGC	3 cut(s)	514, 747, 749
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	3 cut(s)	109, 307, 476
Csp6I	GTAC	1 cut(s)	538
CspAI	ACCGGT	1 cut(s)	599
CviAII	CATG	3 cut(s)	144, 687, 838
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	213, 366, 400
DpnI	GATC	4 cut(s)	218, 412, 685, 783
DpnII	GATC	4 cut(s)	216, 410, 683, 781
DraIII	CACNNNGTG	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	702
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	704
Eco31I	GGTCTC	1 cut(s)	822
Eco47I	GGWCC	2 cut(s)	307, 476
Eco53kI	GAGCTC	1 cut(s)	702
EcoICRI	GAGCTC	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	704
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	147, 690, 841
FatI	CATG	3 cut(s)	143, 686, 837
FauNDI	CATATG	1 cut(s)	386
Fnu4HI	GCNGC	5 cut(s)	6, 36, 510, 549, 588
FriOI	GRGCYC	1 cut(s)	704
Fsp4HI	GCNGC	5 cut(s)	6, 36, 510, 549, 588
FspBI	CTAG	3 cut(s)	428, 498, 660
FspI	TGCGCA	1 cut(s)	513
GlaI	GCGC	3 cut(s)	513, 746, 748
GluI	GCNGC	5 cut(s)	6, 36, 510, 549, 588
HaeIII	GGCC	4 cut(s)	111, 204, 231, 424
HapII	CCGG	2 cut(s)	87, 600
HhaI	GCGC	3 cut(s)	514, 747, 749
Hin1II	CATG	3 cut(s)	147, 690, 841
Hin6I	GCGC	3 cut(s)	512, 745, 747
HinP1I	GCGC	3 cut(s)	512, 745, 747
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	87, 600
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	172, 538
Hpy188I	TCNGA	4 cut(s)	82, 355, 786, 890
Hpy188III	TCNNGA	3 cut(s)	569, 660, 679
Hpy8I	GTNNAC	2 cut(s)	172, 538
HpyAV	CCTTC	4 cut(s)	19, 72, 289, 685
HpyCH4III	ACNGT	2 cut(s)	236, 645
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	2 cut(s)	590, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	525, 746
HpyF3I	CTNAG	3 cut(s)	213, 366, 400
HpySE526I	ACGT	1 cut(s)	712
Hsp92II	CATG	3 cut(s)	147, 690, 841
HspAI	GCGC	3 cut(s)	512, 745, 747
Kzo9I	GATC	4 cut(s)	216, 410, 683, 781
LmnI	GCTCC	4 cut(s)	90, 336, 699, 707
Lsp1109I	GCAGC	4 cut(s)	22, 496, 560, 574
LweI	GCATC	5 cut(s)	73, 285, 352, 424, 586
MaeI	CTAG	3 cut(s)	428, 498, 660
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	4 cut(s)	146, 236, 487, 798
MalI	GATC	4 cut(s)	218, 412, 685, 783
MboI	GATC	4 cut(s)	216, 410, 683, 781
MboII	GAAGA	2 cut(s)	37, 168
MhlI	GDGCHC	2 cut(s)	131, 704
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	4 cut(s)	165, 191, 415, 650
MluNI	TGGCCA	1 cut(s)	231
MnlI	CCTC	9 cut(s)	118, 194, 194, 435, 489, 518, 715, 807, 884
Mox20I	TGGCCA	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	2 cut(s)	303, 810
MslI	CAYNNNNRTG	2 cut(s)	556, 582
Msp20I	TGGCCA	1 cut(s)	231
MspI	CCGG	2 cut(s)	87, 600
MspR9I	CCNGG	2 cut(s)	88, 224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	2 cut(s)	745, 747
MwoI	GCNNNNNNNGC	2 cut(s)	525, 746
NciI	CCSGG	1 cut(s)	88
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	4 cut(s)	216, 410, 683, 781
NlaIII	CATG	3 cut(s)	147, 690, 841
NlaIV	GGNNCC	4 cut(s)	110, 130, 182, 692
NsbI	TGCGCA	1 cut(s)	513
NspI	RCATGY	1 cut(s)	147
PauI	GCGCGC	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	424
PciI	ACATGT	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	395
PinAI	ACCGGT	1 cut(s)	599
PkrI	GCNGC	5 cut(s)	7, 37, 511, 550, 589
Ppu21I	YACGTR	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	307
PscI	ACATGT	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	704
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	4 cut(s)	110, 130, 182, 692
PspPI	GGNCC	3 cut(s)	109, 307, 476
PspPPI	RGGWCCY	1 cut(s)	307
PteI	GCGCGC	1 cut(s)	745
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	2 cut(s)	556, 582
SacI	GAGCTC	1 cut(s)	704
SaqAI	TTAA	2 cut(s)	303, 810
SatI	GCNGC	5 cut(s)	6, 36, 510, 549, 588
Sau3AI	GATC	4 cut(s)	216, 410, 683, 781
Sau96I	GGNCC	3 cut(s)	109, 307, 476
ScrFI	CCNGG	2 cut(s)	88, 224
SduI	GDGCHC	2 cut(s)	131, 704
SfaNI	GCATC	5 cut(s)	73, 285, 352, 424, 586
SfcI	CTRYAG	1 cut(s)	874
SinI	GGWCC	2 cut(s)	307, 476
SmiMI	CAYNNNNRTG	2 cut(s)	556, 582
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	4 cut(s)	165, 191, 415, 650
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	2 cut(s)	474, 831
SspMI	CTAG	3 cut(s)	428, 498, 660
SstI	GAGCTC	1 cut(s)	704
StuI	AGGCCT	1 cut(s)	424
StyD4I	CCNGG	2 cut(s)	86, 222
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	236, 645
TaiI	ACGT	1 cut(s)	715
TaqI	TCGA	2 cut(s)	317, 459
TasI	AATT	4 cut(s)	165, 191, 415, 650
TatI	WGTACW	1 cut(s)	537
Tru1I	TTAA	2 cut(s)	303, 810
Tru9I	TTAA	2 cut(s)	303, 810
TscAI	CASTG	4 cut(s)	157, 239, 650, 766
TseI	GCWGC	5 cut(s)	5, 35, 509, 548, 587
TspRI	CASTG	4 cut(s)	157, 239, 650, 766
VpaK11BI	GGWCC	2 cut(s)	307, 476
XapI	RAATTY	3 cut(s)	191, 415, 650
XbaI	TCTAGA	1 cut(s)	659
XceI	RCATGY	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	3 cut(s)	428, 498, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.