Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Forward (+)

15550286 .. 15559405

Gene Structure 9120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18720.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2931 bp

ATGGGGGTTCCATCGTTTTTTCGTTGGTTGGTAAACAAGTACCCTAAAGTGGTCGTAAAAGCCATTGAAGAGATAGATGAGTTTGTAGATCCAACCTCACCGAACCCTAACGGCATAGAGTTCGATAACCTGTATCTTGACATGAATGGAATTATCCATCCCTGCTTTCACCCGGAAGAAGAAGATGATGATGGTCATGGTCATGGACTTCCACTACCAAGAACTTATGAAGATGTCTTCAACAATATCTTCGAATATATTGATCGGCTTTTTAGAATTGTCAGACCAAGGAAGCTCCTCTACATGGCTATTGATGGAGTTGCACCGAGAGCCAAAATGAATCAACAACGCTCCAGGCGTTTTAAGTCGGCAATGGACAAGAATCTTGCTGAGGCTGAAGAGGAGAAACTGAGACTGCATTTTGAAAAGGAAGGGAAAAAAATTCTACTGGAACAGGAATCAGAAATCTCAGATTCTAATATAATCACCCCTGGAACGGATTTCATGTACAAGTTATCCAAGGCTCTCCAAAGCTACACCAATCTTCGTTTAAGCCAAGATCCAGGCTGGAAGGACATTAAGGTAATACTTTCTGATGCCAATGTTCCTGGAGAAGGAGAACACAAAGTGATGTCATTCATACGCCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGTATGGTCTGGATGCGGATCTAATAATGTTGTCTTTGGCAACACATGAAGTTCACTTTTCCATACTGAGAGAGGATTTACTTTTACAAAACCAGCAGCCATATGCAAACGGTCAATTGACAGCATCATCAGACAAAAGAAAAGCATACATGATGAAAAAGCCCTATCAGTTTCTGCATATATGGATCTTGAGAGAATATTTGGAGCTGGACATGCAAATCAATGATCCTCCTGAAAACTTCAAGTTTGATCTTGAGCGTATCATCGATGACTTCATATTCATATGTTTCTTCGCGGGAAATGATTTTCTACCTCACATGCCAACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGCAAGTCTACAAGAAAGAGTTCAAGAAGATTGGTGGTTATTTGGTTGATATGATTCGGGTTCATGACAAGAAGTTGGGGTACATCAAACTATCAAGAGTGGAGAAATTTATTCTCCTTATTGGAGCATATGAAGAGAAAATATTTAAGAAAAGATCAGATATACGAGACCGTAAACTCAGAGGTTTTTGCAATAATGATGATACAATAGAGGAAGAGATTGATGCTGGAAGTTCAACTTCTAATGTGAAAGCAATTGAAGGATCTGCAGTTGTTTCAGCGGATAATCTTTCATCTTCTGAAATAGCGGAAAACACAAAGGAATATAAGCAAAAATTGAAGGCGAGCATTAGAAGAAAATCTGATCTTTTTAGGAATGGTGATCATTTTGGGACTGACAAAGTACGGTTGGGTGCTACCGGTTTCAAGGAAAGATATTACAAGTACAAATTTTCTGCTGAAACCCCGGGGGAGATTGAATGCAAAAGGAAGGAAGTAGTTAAATGCTACACAGAAGGACTGCTGTGGGTTCTTTTATACTACTTTTCTGGTCCCCCATCATGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAGCTCAGGTCAAACCACAATTTGAGAAGGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGGAGTGCTCATGCACTTCCTGAGGACTATCGCGCACTTATGATGGAAGACTGTTCAAGCATCATAGAATTTTATCCTTCTGATTTCGAAGTGGACATGGATGGGAAAAGATTTACATGGCAGGGTATCAGCAAACTTCCCTTTATAGACGAATCCCGTCTTCTACACGAGACAAGGAAGTTGGAGAAGGAACTCAAGGGGGAAGAAATTGAGAGGAATGCTGAAAAACTTGATCGGTTATTCATCCGAAGCTCCCACATTATGGCATCACAAATTGTCTCGCTGACTAATGGTGGCAATCAGTCTATCAAAATTGACCCCAATTTGAGCTTTGGAATCAGTGACTTTATCCGTCAGCTTGATGATAATGATGCCAAGGTGAAAGGAGATGATAGCTCTGAAGAAGACCCTGTCTTATGTGCCCTATATGAGCTTCCTAACACAAGTCTGCATATGCCTCGTTTACTTGACGGTTTACAACTTCCCCCCAAGACAATCAATGAATGTGAGCTTCTGGAAACAGTTCTATGGCATGAATGTCAGGGAAATGCGACCACTCACAGCTTGCAGCAAGGTCAAGCAAGGTTCAAAAAACCAAATGATTTCGGAAATATAAGTTTTCAAAACAATACTAGACTCACTTCAGGATCTCCCGCCAATTCAATTCACAAGTTTGCTGGTTCTGGATGGGGTTGTGGTAGAGGAAGAGCAAATGGCAGTACTTCTGGGGACCAAAACTATGCTCCAAAGACAACATCCAGTGATCAAAGGGAGGTATCATCTTCTAGCTCCTACTATGCCAAGGGTACAACCTCGGATCACAAAAATGAAGGCACATTACAACATGGCTTTCGGAATCTAAAAATATCAGACTCAGGCCAAGGCTGGAGGCCTACTGGAAGGGGATTTCAGCCGTTAAATAATGTTTTCTGGCCATCAAGAAGTAGTGCCTCTCAAGACAGAAACTTTGCTAGTTATGGTTCACAGTCTTATCATGCTCGGGGCCGTGGCAGAGACCAACACAATTCATGGCAACAAACTTATCCAATTGTTGGTACAGGTAGAGGCCAGCAAGACCCTTGGACACACACCCAGCCTCCTTTTTCTGCTAGCCGCTCGTCATCACATGCCGGTGGAAGAGGGAACTTTCAGCGTAGTGACTTCAGTGGAAGTGGCAGTGGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

977

Amino Acids

111.37

Weight (kDa)

6.59

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 256	2.5e-102	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	312 - 749	7.9e-146	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	2005, 2795
AccBSI	CCGCTC	1 cut(s)	2859
AccI	GTMKAC	1 cut(s)	1059
AccII	CGCG	2 cut(s)	986, 1776
AciI	CCGC	7 cut(s)	682, 707, 986, 1331, 1358, 2397, 2857
AclWI	GGATC	9 cut(s)	83, 554, 665, 717, 884, 911, 1321, 2398, 2568
AcoI	YGGCCR	1 cut(s)	2675
AcsI	RAATTY	5 cut(s)	441, 1023, 1157, 1499, 1811
AcuI	CTGAAG	4 cut(s)	417, 2163, 2370, 2890
AdeI	CACNNNGTG	1 cut(s)	628
AfaI	GTAC	8 cut(s)	41, 509, 1133, 1455, 1496, 2464, 2551, 2800
AfiI	CCNNNNNNNGG	8 cut(s)	49, 304, 496, 614, 1611, 1672, 2005, 2795
AgeI	ACCGGT	1 cut(s)	1469
AjnI	CCWGG	4 cut(s)	353, 490, 562, 607
Alw21I	GWGCWC	1 cut(s)	1753
Alw26I	GTCTC	5 cut(s)	406, 1212, 1907, 2026, 2751
AlwI	GGATC	9 cut(s)	83, 554, 665, 717, 884, 911, 1321, 2398, 2568
AlwNI	CAGNNNCTG	1 cut(s)	865
Ama87I	CYCGRG	2 cut(s)	1516, 2742
AoxI	GGCC	6 cut(s)	1663, 2620, 2633, 2675, 2746, 2809
ApeKI	GCWGC	2 cut(s)	787, 2311
ApoI	RAATTY	5 cut(s)	441, 1023, 1157, 1499, 1811
ArsI	GACNNNNNNTTYG	2 cut(s)	2693, 2725
AsiGI	ACCGGT	1 cut(s)	1469
Asp700I	GAANNNNTTC	2 cut(s)	1070, 2265
AspLEI	GCGC	1 cut(s)	1778
AspS9I	GGNCC	5 cut(s)	1601, 1640, 1663, 2473, 2746
AsuC2I	CCSGG	3 cut(s)	173, 1517, 1518
AsuHPI	GGTGA	5 cut(s)	90, 161, 478, 1442, 2134
AsuII	TTCGAA	2 cut(s)	252, 1830
AsuNHI	GCTAGC	1 cut(s)	2852
AvaI	CYCGRG	2 cut(s)	1516, 2742
AvaII	GGWCC	3 cut(s)	1601, 1640, 2473
AxyI	CCTNAGG	1 cut(s)	1764
BaeGI	GKGCMC	1 cut(s)	2167
BalI	TGGCCA	1 cut(s)	2677
BarI	GAAGNNNNNNTAC	6 cut(s)	284, 316, 1115, 1147, 2565, 2597
BauI	CACGAG	1 cut(s)	1910
BbsI	GAAGAC	4 cut(s)	229, 1797, 1895, 2154
Bbv12I	GWGCWC	1 cut(s)	1753
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	799, 2323
BccI	CCATC	9 cut(s)	19, 165, 185, 308, 1615, 1780, 1838, 2424, 2686
BceAI	ACGGC	3 cut(s)	127, 2641, 2733
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 2183, 2217
BciT130I	CCWGG	4 cut(s)	355, 492, 564, 609
BclI	TGATCA	2 cut(s)	1432, 2506
BcnI	CCSGG	3 cut(s)	173, 1517, 1518
BcoDI	GTCTC	5 cut(s)	406, 1212, 1907, 2026, 2751
BfaI	CTAG	5 cut(s)	1667, 2376, 2529, 2715, 2853
BfmI	CTRYAG	2 cut(s)	1317, 1713
BisI	GCNGC	3 cut(s)	788, 2312, 2857
BlsI	GCNGC	3 cut(s)	789, 2313, 2858
BmcAI	AGTACT	1 cut(s)	2464
Bme1390I	CCNGG	7 cut(s)	173, 355, 492, 564, 609, 1517, 1518
Bme18I	GGWCC	3 cut(s)	1601, 1640, 2473
BmeT110I	CYCGRG	2 cut(s)	1516, 2742
BmgT120I	GGNCC	5 cut(s)	1601, 1640, 1663, 2473, 2746
BmiI	GGNNCC	5 cut(s)	9, 1603, 1699, 2474, 2747
BmrFI	CCNGG	7 cut(s)	173, 355, 492, 564, 609, 1517, 1518
BmsI	GCATC	8 cut(s)	586, 694, 824, 1041, 1264, 1812, 2018, 2104
BmtI	GCTAGC	1 cut(s)	2856
BpiI	GAAGAC	4 cut(s)	229, 1797, 1895, 2154
BpmI	CTGGAG	3 cut(s)	337, 630, 2650
Bpu10I	CCTNAGC	2 cut(s)	390, 1671
Bpu14I	TTCGAA	2 cut(s)	252, 1830
BpuEI	CTTGAG	4 cut(s)	901, 965, 1922, 2682
BpuMI	CCSGG	3 cut(s)	173, 1517, 1518
Bsa29I	ATCGAT	1 cut(s)	957
BsaBI	GATNNNNATC	1 cut(s)	708
BsaI	GGTCTC	2 cut(s)	1212, 2751
BsaWI	WCCGGW	1 cut(s)	1469
BsaXI	ACNNNNNCTCC	2 cut(s)	2824, 2854
Bsc4I	CCNNNNNNNGG	8 cut(s)	49, 304, 496, 614, 1611, 1672, 2005, 2795
Bse118I	RCCGGY	2 cut(s)	1469, 2873
Bse1I	ACTGG	3 cut(s)	453, 2502, 2644
Bse21I	CCTNAGG	1 cut(s)	1764
Bse3DI	GCAATG	2 cut(s)	378, 685
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	4 cut(s)	355, 492, 564, 609
BseCI	ATCGAT	1 cut(s)	957
BseGI	GGATG	6 cut(s)	157, 709, 1849, 1986, 2435, 2498
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	8 cut(s)	49, 304, 496, 614, 1611, 1672, 2005, 2795
BseMI	GCAATG	2 cut(s)	378, 685
BseMII	CTCAG	8 cut(s)	381, 401, 483, 749, 1243, 1685, 1755, 2631
BseNI	ACTGG	3 cut(s)	453, 2502, 2644
BseRI	GAGGAG	2 cut(s)	287, 416
BseSI	GKGCMC	1 cut(s)	2167
BseXI	GCAGC	2 cut(s)	799, 2323
BseYI	CCCAGC	1 cut(s)	2835
Bsh1236I	CGCG	2 cut(s)	986, 1776
BshFI	GGCC	6 cut(s)	1665, 2622, 2635, 2677, 2748, 2811
BshTI	ACCGGT	1 cut(s)	1469
BshVI	ATCGAT	1 cut(s)	957
BsiHKAI	GWGCWC	1 cut(s)	1753
BsiHKCI	CYCGRG	2 cut(s)	1516, 2742
BsiSI	CCGG	4 cut(s)	173, 1470, 1517, 2874
BslFI	GGGAC	3 cut(s)	1456, 1587, 2486
BslI	CCNNNNNNNGG	8 cut(s)	49, 304, 496, 614, 1611, 1672, 2005, 2795
BsmAI	GTCTC	5 cut(s)	406, 1212, 1907, 2026, 2751
BsmFI	GGGAC	3 cut(s)	1456, 1587, 2486
BsmI	GAATGC	2 cut(s)	1535, 1966
BsnI	GGCC	6 cut(s)	1665, 2622, 2635, 2677, 2748, 2811
Bso31I	GGTCTC	2 cut(s)	1212, 2751
BsoBI	CYCGRG	2 cut(s)	1516, 2742
Bsp119I	TTCGAA	2 cut(s)	252, 1830
Bsp1286I	GDGCHC	2 cut(s)	1753, 2167
Bsp1407I	TGTACA	1 cut(s)	507
BspACI	CCGC	7 cut(s)	682, 707, 986, 1331, 1358, 2397, 2857
BspANI	GGCC	6 cut(s)	1665, 2622, 2635, 2677, 2748, 2811
BspCNI	CTCAG	8 cut(s)	382, 402, 482, 750, 1242, 1684, 1756, 2630
BspDI	ATCGAT	1 cut(s)	957
BspFNI	CGCG	2 cut(s)	986, 1776
BspHI	TCATGA	2 cut(s)	1027, 1114
BspLI	GGNNCC	5 cut(s)	9, 1603, 1699, 2474, 2747
BspMAI	CTGCAG	1 cut(s)	1321
BspOI	GCTAGC	1 cut(s)	2856
BspPI	GGATC	9 cut(s)	83, 554, 665, 717, 884, 911, 1321, 2398, 2568
BspQI	GCTCTTC	1 cut(s)	2443
BspT104I	TTCGAA	2 cut(s)	252, 1830
BspTNI	GGTCTC	2 cut(s)	1212, 2751
BsrBI	CCGCTC	1 cut(s)	2859
BsrDI	GCAATG	2 cut(s)	378, 685
BsrFI	RCCGGY	2 cut(s)	1469, 2873
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	3 cut(s)	453, 2502, 2644
BssAI	RCCGGY	2 cut(s)	1469, 2873
BssSI	CACGAG	1 cut(s)	1910
BssT1I	CCWWGG	7 cut(s)	287, 519, 1742, 2118, 2544, 2623, 2822
Bst2BI	CACGAG	1 cut(s)	1910
Bst2UI	CCWGG	4 cut(s)	355, 492, 564, 609
Bst4CI	ACNGT	8 cut(s)	658, 803, 1223, 1458, 1796, 2216, 2266, 2730
Bst6I	CTCTTC	6 cut(s)	63, 393, 1179, 1260, 2443, 2875
BstAUI	TGTACA	1 cut(s)	507
BstBI	TTCGAA	2 cut(s)	252, 1830
BstC8I	GCNNGC	4 cut(s)	1396, 2309, 2813, 2854
BstDEI	CTNAG	8 cut(s)	390, 410, 469, 758, 1229, 1671, 1764, 2617
BstDSI	CCRYGG	1 cut(s)	2749
BstENI	CCTNNNNNAGG	2 cut(s)	612, 1670
BstF5I	GGATG	6 cut(s)	157, 709, 1849, 1986, 2435, 2498
BstFNI	CGCG	2 cut(s)	986, 1776
BstHHI	GCGC	1 cut(s)	1778
BstMAI	GTCTC	5 cut(s)	406, 1212, 1907, 2026, 2751
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 904
BstNI	CCWGG	4 cut(s)	355, 492, 564, 609
BstNSI	RCATGY	3 cut(s)	907, 1012, 2873
BstSCI	CCNGG	7 cut(s)	171, 353, 490, 562, 607, 1515, 1516
BstSFI	CTRYAG	2 cut(s)	1317, 1713
BstSLI	GKGCMC	1 cut(s)	2167
BstUI	CGCG	2 cut(s)	986, 1776
BstV1I	GCAGC	2 cut(s)	799, 2323
BstV2I	GAAGAC	4 cut(s)	229, 1797, 1895, 2154
BstX2I	RGATCY	6 cut(s)	88, 559, 709, 876, 1313, 2390
BstYI	RGATCY	6 cut(s)	88, 559, 709, 876, 1313, 2390
Bsu15I	ATCGAT	1 cut(s)	957
Bsu36I	CCTNAGG	1 cut(s)	1764
BsuRI	GGCC	6 cut(s)	1665, 2622, 2635, 2677, 2748, 2811
BsuTUI	ATCGAT	1 cut(s)	957
BtgI	CCRYGG	1 cut(s)	2749
BtsCI	GGATG	6 cut(s)	157, 709, 1849, 1986, 2435, 2498
BtsI	GCAGTG	1 cut(s)	2926
BtsIMutI	CAGTG	4 cut(s)	2089, 2509, 2914, 2926
Cac8I	GCNNGC	4 cut(s)	1396, 2309, 2813, 2854
CaiI	CAGNNNCTG	1 cut(s)	865
CciI	TCATGA	2 cut(s)	1027, 1114
CfoI	GCGC	1 cut(s)	1778
Cfr10I	RCCGGY	2 cut(s)	1469, 2873
Cfr13I	GGNCC	5 cut(s)	1601, 1640, 1663, 2473, 2746
Cfr9I	CCCGGG	1 cut(s)	1516
ClaI	ATCGAT	1 cut(s)	957
Csp6I	GTAC	8 cut(s)	40, 508, 1132, 1454, 1495, 2463, 2550, 2799
CspAI	ACCGGT	1 cut(s)	1469
CviQI	GTAC	8 cut(s)	40, 508, 1132, 1454, 1495, 2463, 2550, 2799
DdeI	CTNAG	8 cut(s)	390, 410, 469, 758, 1229, 1671, 1764, 2617
DraI	TTTAAA	1 cut(s)	1708
DraIII	CACNNNGTG	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	2675
Eam1104I	CTCTTC	6 cut(s)	63, 393, 1179, 1260, 2443, 2875
EarI	CTCTTC	6 cut(s)	63, 393, 1179, 1260, 2443, 2875
Eco130I	CCWWGG	7 cut(s)	287, 519, 1742, 2118, 2544, 2623, 2822
Eco147I	AGGCCT	1 cut(s)	2635
Eco31I	GGTCTC	2 cut(s)	1212, 2751
Eco47I	GGWCC	3 cut(s)	1601, 1640, 2473
Eco57I	CTGAAG	4 cut(s)	417, 2163, 2370, 2890
Eco81I	CCTNAGG	1 cut(s)	1764
Eco88I	CYCGRG	2 cut(s)	1516, 2742
EcoNI	CCTNNNNNAGG	2 cut(s)	612, 1670
EcoO109I	RGGNCCY	1 cut(s)	1663
EcoRII	CCWGG	4 cut(s)	353, 490, 562, 607
EcoT14I	CCWWGG	7 cut(s)	287, 519, 1742, 2118, 2544, 2623, 2822
ErhI	CCWWGG	7 cut(s)	287, 519, 1742, 2118, 2544, 2623, 2822
FalI	AAGNNNNNCTT	2 cut(s)	1273, 1305
FaqI	GGGAC	3 cut(s)	1456, 1587, 2486
FauI	CCCGC	3 cut(s)	689, 979, 2404
FauNDI	CATATG	4 cut(s)	793, 974, 1180, 2196
FbaI	TGATCA	2 cut(s)	1432, 2506
FblI	GTMKAC	1 cut(s)	1059
Fnu4HI	GCNGC	3 cut(s)	788, 2312, 2857
FokI	GGATG	6 cut(s)	144, 716, 1856, 1973, 2442, 2485
Fsp4HI	GCNGC	3 cut(s)	788, 2312, 2857
FspBI	CTAG	5 cut(s)	1667, 2376, 2529, 2715, 2853
GlaI	GCGC	1 cut(s)	1777
GluI	GCNGC	3 cut(s)	788, 2312, 2857
GsaI	CCCAGC	1 cut(s)	2839
GsuI	CTGGAG	3 cut(s)	337, 630, 2650
HaeIII	GGCC	6 cut(s)	1665, 2622, 2635, 2677, 2748, 2811
HapII	CCGG	4 cut(s)	173, 1470, 1517, 2874
HhaI	GCGC	1 cut(s)	1778
Hin6I	GCGC	1 cut(s)	1776
HinP1I	GCGC	1 cut(s)	1776
HpaII	CCGG	4 cut(s)	173, 1470, 1517, 2874
HphI	GGTGA	5 cut(s)	90, 161, 478, 1442, 2134
Hpy166II	GTNNAC	8 cut(s)	34, 745, 1060, 1226, 1837, 2207, 2219, 2726
Hpy8I	GTNNAC	8 cut(s)	34, 745, 1060, 1226, 1837, 2207, 2219, 2726
HpyCH4III	ACNGT	8 cut(s)	658, 803, 1223, 1458, 1796, 2216, 2266, 2730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 904
HpyF3I	CTNAG	8 cut(s)	390, 410, 469, 758, 1229, 1671, 1764, 2617
HspAI	GCGC	1 cut(s)	1776
Ksp22I	TGATCA	2 cut(s)	1432, 2506
LguI	GCTCTTC	1 cut(s)	2443
LmnI	GCTCC	7 cut(s)	300, 356, 895, 1175, 2000, 2491, 2537
Lsp1109I	GCAGC	2 cut(s)	799, 2323
LweI	GCATC	8 cut(s)	586, 694, 824, 1041, 1264, 1812, 2018, 2104
MaeI	CTAG	5 cut(s)	1667, 2376, 2529, 2715, 2853
MaeIII	GTNAC	2 cut(s)	2084, 2900
MbiI	CCGCTC	1 cut(s)	2859
MfeI	CAATTG	4 cut(s)	806, 1038, 1305, 2790
MflI	RGATCY	6 cut(s)	88, 559, 709, 876, 1313, 2390
MhlI	GDGCHC	2 cut(s)	1753, 2167
MlsI	TGGCCA	1 cut(s)	2677
MluNI	TGGCCA	1 cut(s)	2677
MlyI	GAGTC	2 cut(s)	2373, 2609
MmeI	TCCRAC	2 cut(s)	116, 1905
Mox20I	TGGCCA	1 cut(s)	2677
MroXI	GAANNNNTTC	2 cut(s)	1070, 2265
MscI	TGGCCA	1 cut(s)	2677
MseI	TTAA	7 cut(s)	363, 551, 579, 1197, 1551, 1707, 2660
MslI	CAYNNNNRTG	5 cut(s)	201, 1032, 1615, 2568, 2874
Msp20I	TGGCCA	1 cut(s)	2677
MspA1I	CMGCKG	1 cut(s)	1331
MspI	CCGG	4 cut(s)	173, 1470, 1517, 2874
MspR9I	CCNGG	7 cut(s)	173, 355, 492, 564, 609, 1517, 1518
MunI	CAATTG	4 cut(s)	806, 1038, 1305, 2790
Mva1269I	GAATGC	2 cut(s)	1535, 1966
MvaI	CCWGG	4 cut(s)	355, 492, 564, 609
MvnI	CGCG	2 cut(s)	986, 1776
MwoI	GCNNNNNNNGC	2 cut(s)	329, 904
NciI	CCSGG	3 cut(s)	173, 1517, 1518
NdeI	CATATG	4 cut(s)	793, 974, 1180, 2196
NheI	GCTAGC	1 cut(s)	2852
NlaIV	GGNNCC	5 cut(s)	9, 1603, 1699, 2474, 2747
NmuCI	GTSAC	2 cut(s)	2084, 2900
NspI	RCATGY	3 cut(s)	907, 1012, 2873
NspV	TTCGAA	2 cut(s)	252, 1830
PagI	TCATGA	2 cut(s)	1027, 1114
PceI	AGGCCT	1 cut(s)	2635
PciSI	GCTCTTC	1 cut(s)	2443
PcsI	WCGNNNNNNNCGW	2 cut(s)	355, 649
PctI	GAATGC	2 cut(s)	1535, 1966
PdmI	GAANNNNTTC	2 cut(s)	1070, 2265
PfeI	GAWTC	8 cut(s)	340, 382, 458, 473, 1105, 1895, 2079, 2599
PflFI	GACNNNGTC	1 cut(s)	2153
PflMI	CCANNNNNTGG	2 cut(s)	2005, 2795
PfoI	TCCNGGA	1 cut(s)	607
PinAI	ACCGGT	1 cut(s)	1469
PkrI	GCNGC	3 cut(s)	789, 2313, 2858
PleI	GAGTC	2 cut(s)	2373, 2609
PpsI	GAGTC	2 cut(s)	2373, 2609
Psp6I	CCWGG	4 cut(s)	353, 490, 562, 607
PspFI	CCCAGC	1 cut(s)	2835
PspGI	CCWGG	4 cut(s)	353, 490, 562, 607
PspN4I	GGNNCC	5 cut(s)	9, 1603, 1699, 2474, 2747
PspPI	GGNCC	5 cut(s)	1601, 1640, 1663, 2473, 2746
PstI	CTGCAG	1 cut(s)	1321
PstNI	CAGNNNCTG	1 cut(s)	865
PsuI	RGATCY	6 cut(s)	88, 559, 709, 876, 1313, 2390
PsyI	GACNNNGTC	1 cut(s)	2153
RsaI	GTAC	8 cut(s)	41, 509, 1133, 1455, 1496, 2464, 2551, 2800
RsaNI	GTAC	8 cut(s)	40, 508, 1132, 1454, 1495, 2463, 2550, 2799
RseI	CAYNNNNRTG	5 cut(s)	201, 1032, 1615, 2568, 2874
SapI	GCTCTTC	1 cut(s)	2443
SaqAI	TTAA	7 cut(s)	363, 551, 579, 1197, 1551, 1707, 2660
SatI	GCNGC	3 cut(s)	788, 2312, 2857
Sau96I	GGNCC	5 cut(s)	1601, 1640, 1663, 2473, 2746
ScaI	AGTACT	1 cut(s)	2464
SchI	GAGTC	2 cut(s)	2373, 2609
ScrFI	CCNGG	7 cut(s)	173, 355, 492, 564, 609, 1517, 1518
SduI	GDGCHC	2 cut(s)	1753, 2167
SfaNI	GCATC	8 cut(s)	586, 694, 824, 1041, 1264, 1812, 2018, 2104
SfcI	CTRYAG	2 cut(s)	1317, 1713
SfuI	TTCGAA	2 cut(s)	252, 1830
SinI	GGWCC	3 cut(s)	1601, 1640, 2473
SmaI	CCCGGG	1 cut(s)	1518
SmiMI	CAYNNNNRTG	5 cut(s)	201, 1032, 1615, 2568, 2874
SmlI	CTYRAG	4 cut(s)	880, 944, 1937, 2697
SmoI	CTYRAG	4 cut(s)	880, 944, 1937, 2697
SseBI	AGGCCT	1 cut(s)	2635
SsiI	CCGC	7 cut(s)	682, 707, 986, 1331, 1358, 2397, 2857
SspI	AATATT	2 cut(s)	890, 1194
SspMI	CTAG	5 cut(s)	1667, 2376, 2529, 2715, 2853
StuI	AGGCCT	1 cut(s)	2635
StyD4I	CCNGG	7 cut(s)	171, 353, 490, 562, 607, 1515, 1516
StyI	CCWWGG	7 cut(s)	287, 519, 1742, 2118, 2544, 2623, 2822
TaaI	ACNGT	8 cut(s)	658, 803, 1223, 1458, 1796, 2216, 2266, 2730
TaqI	TCGA	4 cut(s)	123, 252, 957, 1830
TatI	WGTACW	3 cut(s)	507, 1494, 2462
TauI	GCSGC	1 cut(s)	2859
TfiI	GAWTC	8 cut(s)	340, 382, 458, 473, 1105, 1895, 2079, 2599
Tru1I	TTAA	7 cut(s)	363, 551, 579, 1197, 1551, 1707, 2660
Tru9I	TTAA	7 cut(s)	363, 551, 579, 1197, 1551, 1707, 2660
TscAI	CASTG	4 cut(s)	2089, 2509, 2914, 2926
TseFI	GTSAC	2 cut(s)	2084, 2900
TseI	GCWGC	2 cut(s)	787, 2311
Tsp45I	GTSAC	2 cut(s)	2084, 2900
TspGWI	ACGGA	2 cut(s)	512, 2084
TspMI	CCCGGG	1 cut(s)	1516
TspRI	CASTG	4 cut(s)	2089, 2509, 2914, 2926
Tth111I	GACNNNGTC	1 cut(s)	2153
Van91I	CCANNNNNTGG	2 cut(s)	2005, 2795
VpaK11BI	GGWCC	3 cut(s)	1601, 1640, 2473
XagI	CCTNNNNNAGG	2 cut(s)	612, 1670
XapI	RAATTY	5 cut(s)	441, 1023, 1157, 1499, 1811
XceI	RCATGY	3 cut(s)	907, 1012, 2873
XcmI	CCANNNNNNNNNTGG	2 cut(s)	692, 1614
XmaI	CCCGGG	1 cut(s)	1516
XmiI	GTMKAC	1 cut(s)	1059
XmnI	GAANNNNTTC	2 cut(s)	1070, 2265
XspI	CTAG	5 cut(s)	1667, 2376, 2529, 2715, 2853
ZrmI	AGTACT	1 cut(s)	2464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.