Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Forward (+)

137064 .. 138015

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom520g00080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCACTCCTTTAATTTAAGGAGTGACAGCTTTAGGGTTTACCAGTTAGTAGGATTTGCCAAGGTAGAGTTGCTTGTAACCTTTTACCTCATTATGCATCCCCCCTTGTACATTCAATCAATCTATGAAAAATACATTCAAACAAACTTAAAATTCCCACAGATTTACATATGCCTCATTTACTTGATGGGTTTTTTTGAAACTTTTATTTATATGTTTCCAAATGCATCTTTTAGTTCAAAACTTAAGTGGCAACACTTTTCTTCATCAATATGCTATGCTATATATTATGACAATTTTTCTGTTCATATTCTTTTGCAGACAATCACCGAGGATGATCTTATGGGGGCAAAATTATGGCATGAATATCAGAAAAGCGCACCTACCACCACCACTACCACTACCACCACTTCCAAGTTAATCGGTTTATTGGTTCTGGTCTTCTCCATTTGTTTGTCTTATTTATGTATATTGCCTGTTCTCTTTAACTTATTTGGTAGAGAACTAAATGCAATGCAGCACCCGGCTCCAGGAGAGAACAATGCTAGATGGACTTCTAGCTATACAAATTTAGTACACAAATTTGCAGGTTCTGGATGGGGTTGTGGTAGAGGGAAAGAAGTTGCTAATCCTAATTCTAGAGAACGGTTTTATGCTCCTGGAGGAATACTTGGCGAAATAGTAATGTCATCTAGCTCATATGCAGCTATGGGTTCCACAGACTACAAAAGAGTCTTTCGTGGGAGATCAGTCACTAATGATAAGTGGAGGACAATTGGTTATGTTTCCGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

266

Amino Acids

30.28

Weight (kDa)

8.97

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	578
AccIII	TCCGGA	1 cut(s)	788
AcsI	RAATTY	3 cut(s)	152, 568, 581
AfaI	GTAC	2 cut(s)	110, 576
AfiI	CCNNNNNNNGG	1 cut(s)	530
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	116, 140, 200, 240
AjnI	CCWGG	2 cut(s)	529, 658
AluBI	AGCT	4 cut(s)	30, 561, 696, 707
AluI	AGCT	4 cut(s)	30, 561, 696, 707
AlwNI	CAGNNNCTG	1 cut(s)	593
Aor13HI	TCCGGA	1 cut(s)	788
ApeKI	GCWGC	2 cut(s)	517, 704
ApoI	RAATTY	3 cut(s)	152, 568, 581
AspLEI	GCGC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	529, 716
BccI	CCATC	3 cut(s)	181, 543, 591
BciT130I	CCWGG	2 cut(s)	531, 660
BcnI	CCSGG	1 cut(s)	524
BfaI	CTAG	4 cut(s)	546, 558, 639, 693
BfrI	CTTAAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	578
BisI	GCNGC	2 cut(s)	518, 705
BlsI	GCNGC	2 cut(s)	519, 706
Bme1390I	CCNGG	3 cut(s)	524, 531, 660
BmiI	GGNNCC	2 cut(s)	528, 715
BmrFI	CCNGG	3 cut(s)	524, 531, 660
BmsI	GCATC	2 cut(s)	106, 236
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	2 cut(s)	513, 681
BpuMI	CCSGG	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	60, 330
BsaWI	WCCGGW	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	788
BseBI	CCWGG	2 cut(s)	531, 660
BseDI	CCNNGG	2 cut(s)	60, 330
BseGI	GGATG	3 cut(s)	97, 340, 602
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMI	GCAATG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	529, 716
BsiSI	CCGG	2 cut(s)	524, 789
BslI	CCNNNNNNNGG	1 cut(s)	530
Bsp13I	TCCGGA	1 cut(s)	788
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	337, 746
BspEI	TCCGGA	1 cut(s)	788
BspLI	GGNNCC	2 cut(s)	528, 715
BspMI	ACCTGC	1 cut(s)	578
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	519
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	60, 330
BssMI	GATC	2 cut(s)	337, 746
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	531, 660
Bst4CI	ACNGT	1 cut(s)	648
BstAFI	CTTAAG	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	97, 340, 602
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	2 cut(s)	340, 749
BstMBI	GATC	2 cut(s)	337, 746
BstNI	CCWGG	2 cut(s)	531, 660
BstSCI	CCNGG	3 cut(s)	522, 529, 658
BstV1I	GCAGC	2 cut(s)	529, 716
BstV2I	GAAGAC	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	97, 340, 602
BveI	ACCTGC	1 cut(s)	578
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	109, 575
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	5 cut(s)	30, 527, 561, 696, 707
CviKI_1	RGCY	5 cut(s)	30, 527, 561, 696, 707
CviQI	GTAC	2 cut(s)	109, 575
DpnI	GATC	2 cut(s)	339, 748
DpnII	GATC	2 cut(s)	337, 746
Eco130I	CCWWGG	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	529, 658
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	2 cut(s)	99, 229
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	365
FatI	CATG	1 cut(s)	361
FauNDI	CATATG	2 cut(s)	170, 700
Fnu4HI	GCNGC	2 cut(s)	518, 705
FokI	GGATG	3 cut(s)	84, 347, 609
Fsp4HI	GCNGC	2 cut(s)	518, 705
FspBI	CTAG	4 cut(s)	546, 558, 639, 693
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	2 cut(s)	518, 705
GsuI	CTGGAG	2 cut(s)	513, 681
HapII	CCGG	2 cut(s)	524, 789
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	1 cut(s)	732
HpaII	CCGG	2 cut(s)	524, 789
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	40, 577
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	3 cut(s)	594, 639, 789
Hpy8I	GTNNAC	2 cut(s)	40, 577
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4V	TGCA	8 cut(s)	4, 97, 227, 319, 512, 517, 587, 704
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	1 cut(s)	378
Kpn2I	TCCGGA	1 cut(s)	788
Kzo9I	GATC	2 cut(s)	337, 746
LmnI	GCTCC	2 cut(s)	532, 661
Lsp1109I	GCAGC	2 cut(s)	529, 716
LweI	GCATC	2 cut(s)	106, 236
MaeI	CTAG	4 cut(s)	546, 558, 639, 693
MaeIII	GTNAC	3 cut(s)	23, 76, 751
MalI	GATC	2 cut(s)	339, 748
MboI	GATC	2 cut(s)	337, 746
MboII	GAAGA	2 cut(s)	255, 433
MfeI	CAATTG	1 cut(s)	774
MluCI	AATT	8 cut(s)	13, 152, 295, 353, 568, 581, 634, 774
MlyI	GAGTC	1 cut(s)	741
MnlI	CCTC	6 cut(s)	98, 185, 325, 605, 656, 762
Mph1103I	ATGCAT	2 cut(s)	99, 229
MroI	TCCGGA	1 cut(s)	788
MseI	TTAA	6 cut(s)	12, 17, 149, 246, 419, 486
MslI	CAYNNNNRTG	1 cut(s)	271
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	2 cut(s)	524, 789
MspR9I	CCNGG	3 cut(s)	524, 531, 660
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	2 cut(s)	531, 660
NciI	CCSGG	1 cut(s)	524
NdeI	CATATG	2 cut(s)	170, 700
NdeII	GATC	2 cut(s)	337, 746
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	2 cut(s)	528, 715
NmuCI	GTSAC	2 cut(s)	23, 751
NsiI	ATGCAT	2 cut(s)	99, 229
PfoI	TCCNGGA	2 cut(s)	529, 658
PkrI	GCNGC	2 cut(s)	519, 706
PleI	GAGTC	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	529, 658
PspGI	CCWGG	2 cut(s)	529, 658
PspN4I	GGNNCC	2 cut(s)	528, 715
PstNI	CAGNNNCTG	1 cut(s)	593
RsaI	GTAC	2 cut(s)	110, 576
RsaNI	GTAC	2 cut(s)	109, 575
RseI	CAYNNNNRTG	1 cut(s)	271
SaqAI	TTAA	6 cut(s)	12, 17, 149, 246, 419, 486
SatI	GCNGC	2 cut(s)	518, 705
Sau3AI	GATC	2 cut(s)	337, 746
SchI	GAGTC	1 cut(s)	741
ScrFI	CCNGG	3 cut(s)	524, 531, 660
SetI	ASST	9 cut(s)	32, 66, 83, 90, 385, 563, 592, 698, 709
SfaNI	GCATC	2 cut(s)	106, 236
SmiMI	CAYNNNNRTG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	8 cut(s)	13, 152, 295, 353, 568, 581, 634, 774
SspMI	CTAG	4 cut(s)	546, 558, 639, 693
StyD4I	CCNGG	3 cut(s)	522, 529, 658
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	648
TasI	AATT	8 cut(s)	13, 152, 295, 353, 568, 581, 634, 774
TatI	WGTACW	2 cut(s)	108, 574
Tru1I	TTAA	6 cut(s)	12, 17, 149, 246, 419, 486
Tru9I	TTAA	6 cut(s)	12, 17, 149, 246, 419, 486
TseFI	GTSAC	2 cut(s)	23, 751
TseI	GCWGC	2 cut(s)	517, 704
Tsp45I	GTSAC	2 cut(s)	23, 751
TspDTI	ATGAA	4 cut(s)	141, 255, 296, 378
Vha464I	CTTAAG	1 cut(s)	245
XapI	RAATTY	3 cut(s)	152, 568, 581
XbaI	TCTAGA	1 cut(s)	638
XspI	CTAG	4 cut(s)	546, 558, 639, 693
Zsp2I	ATGCAT	2 cut(s)	99, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.