Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

14620926 .. 14626787

Gene Structure 5862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14580.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2976 bp

ATGGGGGTGCCCTCGTTTTTCAAATGGCTGGTGAACAAGTATCCCAAAGTGGTGGTCAAAGCTATCGAAGGTCAGAGAGAGGAGTCTCCAAACCCAAACCCTACTAACTTGGAGTTCGATAACTTTTATCTTGACATGAATGGGATCATCCATCCTTGCTTCCACCCAGAAGCAGATGACGATGATGATGGTGGACTTCTGCCACCAGCAAATTTTGAAGAGGTGTTCATCAATATTTTTGAATATATTGATATACTTTTCAATATTGTTAGGCCACGGAAGCTACTATACTTGGCCATAGATGGAGTTGCTCCAAGGGCTAAAATGAATCAACAGCGAATGAGGCGCTTTAAGTCAGCGAAGGATGCTGAGATCGCTGAAGTTGAAGAAGAGAAGCTGAGAAGACAGTTTGAATTGGAAAGCAAACAAGTCCTACCAAAGCAGCAGTCTGAAGTATCAGATTCTAATATAATAACCCCCGGAACTGAATTTATGCATAAATTGTCAAAGGCTCTTCGAAACTATATCAGTTTACGTTTGAGCAATGATCTAGGCTGGAGGGACATCGAGGTAATTCTGTCTGATGCCAATGCTCCTGGGGAAGGTGAGCACAAAATAATGTCATTCATACGCTCACAGCGCAATCTTCCTTCATATGATCCAAACACGCGCCATTGCTTATATGGACTGGATGCTGATCTTGTCATGTTGGCTTTGGCCACGCATGAGCTTCACTTTTCCATACTGAGAGAGGATGTTCTACATAATGAACAGCGTCATAAAAACCGTGAATCTATTCGAGAGAAGGGTCCATCTTCAGGAAAGTCGGATAACAAAAAAAGATCCATGCTAAAAAAGCCCTTTCAGTTTCTTCATGTTTGGATTTTGAGGGAATACTTGGAGCTTGATTTGAAAATTGACGACCCACCCGAGAACTTTAAGTTTGATCTTGAGCGTATAATTGATGACTTTATCTTCATGTGCTTTTTTGCGGGAAATGATTTTCTGCCCCACATGCCAACTTTGGAAATTCATGAGGGTGCAATTGACTTGCTGATGACTGTCTATAGGAAAGAATTAAAAAATCTCGGTGGTTACATGGTTGATATGCTCCGGGTCAATGACAAGAAATCAGGGTACATCAAGCTATCCAGAGTTGAGAAATTCATCCTTCTTGTTGGTTCTTATGAAGACAAAATTTTCAAGAAAAGATCAGAACTACGTGACCGTAAACTGAGACGTCTGTGTTATTATAATGATTCTCTAGAGGAAGAAGTTGATACTGGAAGTTCAATTACTGGTTCGAGCAATACTCAGGCATTCTTCAGTGGAGAAGAACTGGAAGTTTGGTCAGATGGAACGTCTGACATTATGCATTCTCAAGTTGTAGAAAATACAAAGGAGTTGAAGAAAAAAATGAAAGATAACATCAGAAGGAAATCTGATCTGTTCAAGAATGGTGATTTGGGGAGTGACAAGGTCCGATTCGCTGTGGGAGGCTATAAGGAAAGATATTACAAATACAAATTTTCTGCAGAAGGTCCAGCGGATATTGAAAGAAAAAGGAAGGAAGTAGTTAAATGCTACACTGAGGGACTGCTCTGGGTTTTATTGTACTATTTTTCGGAGCCCCCATCATGGACATGGTTTTATCCTTTCTATTACGGGCCATTTGCTTCAGACCTCAAGGGCCTTGGTCAGGTGAAAGCGAAGTTTAAAAAAGGTTTCCCTTTTAAGCCTATTGATACTCTCATGGCTGTGTTACCTCCAAGAAGTGCTCATGCACTTCCTAAAGATTATCAGAAACTAATGACTGAAGAGAGTTCCAGCATTATTGACTTTTATCCTACTGATTTTGAAATCGACATGGATGGGAAACGCTTCACATGGCAGGGTATTTGCAAGCTTCCATTTATTGAAGAGGAACGCCTTCTGTCTGAGACTAAAAACTTAGACAAAGAACTGCTGGGGGACGAAAGAGATCGAAATACAGAAAAATCTGATCAATTATTTGTGCGAAGAACACACAATTTGGTGTCACAAATTATGTCACTATCTAGCAAGGAAAGTTGGTCTATCAAGATTGACACTAGTTCGAGTTTTGGAGTTGCTGGCACCATACGTCGTCTTGATGCTGCCATGAGTGAAGGAGGAGATTACAAGCTTCAAGAAGACCATGTCGTTTGCATGCTATATGAGCTTCCCGATAGTGATGCACATATGCCTCGTTTACTTGATGGTGTAAAGCATCCCAGTAAGACAATCACCAAGGATGACCTTACGGAGACAAAATTATGGCATGAATATCAGGGAAGCGCACCTGCCACCACCACCACCACCACTTCCAGCGCCCGGCTCCAGGAGAGGTTTCGGAGACGAGATAACAACGGAAATGGAGGCTTCCAGAACAATGCTAGATGCACTTCTAGCTCTACGGATTTAATACACAAATTTGCAGGTTCTGGATGGGATTGTGGTAGAGGCAAAGAAGTTGCTAATCCTAATTCTGGAGAACGGTTTTATGCTCCTCGGGGAATACCTGGCGAAAGAGTAATGTCATCTAGCTCATATTCAGCCATGGGTTCCACAGACTACAAAAGAGTCTCTTTTCATGGGAGATCAGTCTCTAATGATAAGTGGAGGGCAGTTGGTTATGTTTCCGGAGATCGAGCACAAGGCTTTAAGGATTTGAAGATATCGGAGCCAAGCCAAGCTTGGAGGCCAAGTGCACGAGGACAACCAGCGAACAATGCTTTTTGGCCATCTAGAAATAGTTTCGGACATAACACAAACCATTCTTGGCAGAGTTCACAATTAAATCATAGTCATGGCCGTGGCAGAGGCCAACAGCAGGGTGGTCGCGGCCAAGGCCAACAGGAATATTGGAAGCGTTACACACCTTTTTCTGCTAACGATTCATCACAAGCCGGTGGGAGATCGTCACAGTTTGTTCCACGTAGTTCTGTCAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

992

Amino Acids

113.77

Weight (kDa)

8.24

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1254
AarI	CACCTGC	1 cut(s)	2329
AatII	GACGTC	1 cut(s)	1243
Acc36I	ACCTGC	2 cut(s)	2329, 2447
AccB1I	GGYRCC	2 cut(s)	7, 2114
AccII	CGCG	2 cut(s)	670, 2862
AccIII	TCCGGA	1 cut(s)	2660
AciI	CCGC	3 cut(s)	992, 1547, 2862
AclWI	GGATC	3 cut(s)	152, 653, 837
AcoI	YGGCCR	5 cut(s)	294, 717, 2759, 2830, 2863
AcsI	RAATTY	7 cut(s)	211, 488, 1029, 1163, 1197, 1526, 2450
AcuI	CTGAAG	6 cut(s)	399, 471, 801, 1309, 1662, 1836
AcyI	GRCGYC	1 cut(s)	1240
AfaI	GTAC	2 cut(s)	1139, 1616
AfiI	CCNNNNNNNGG	8 cut(s)	602, 818, 1638, 1699, 2352, 2359, 2507, 2851
AhlI	ACTAGT	1 cut(s)	2090
AjnI	CCWGG	3 cut(s)	595, 2358, 2539
AjuI	GAANNNNNNNTTGG	2 cut(s)	1448, 1480
Alw21I	GWGCWC	4 cut(s)	612, 1780, 2674, 2731
Alw26I	GTCTC	7 cut(s)	90, 1231, 1934, 2279, 2368, 2608, 2629
Alw44I	GTGCAC	1 cut(s)	2727
AlwI	GGATC	3 cut(s)	152, 653, 837
AlwNI	CAGNNNCTG	1 cut(s)	2462
Ama87I	CYCGRG	2 cut(s)	929, 2529
Aor13HI	TCCGGA	1 cut(s)	2660
ApaLI	GTGCAC	1 cut(s)	2727
ApeKI	GCWGC	2 cut(s)	442, 2135
ApoI	RAATTY	7 cut(s)	211, 488, 1029, 1163, 1197, 1526, 2450
ArsI	GACNNNNNNTTYG	4 cut(s)	39, 71, 431, 463
Asp700I	GAANNNNTTC	3 cut(s)	795, 1880, 1929
AspLEI	GCGC	5 cut(s)	348, 642, 672, 2318, 2351
AspS9I	GGNCC	5 cut(s)	809, 1480, 1541, 1667, 1690
AsuC2I	CCSGG	3 cut(s)	480, 1115, 2353
AsuHPI	GGTGA	5 cut(s)	43, 617, 1472, 1714, 2257
AsuII	TTCGAA	1 cut(s)	517
AvaI	CYCGRG	2 cut(s)	929, 2529
AvaII	GGWCC	3 cut(s)	809, 1480, 1541
BaeGI	GKGCMC	2 cut(s)	12, 2731
BalI	TGGCCA	3 cut(s)	296, 719, 2761
BanI	GGYRCC	2 cut(s)	7, 2114
BanII	GRGCYC	1 cut(s)	1632
BarI	GAAGNNNNNNTAC	4 cut(s)	272, 304, 1279, 1311
BauI	CACGAG	1 cut(s)	2730
BbsI	GAAGAC	3 cut(s)	409, 1197, 2178
Bbv12I	GWGCWC	4 cut(s)	612, 1780, 2674, 2731
BbvI	GCAGC	2 cut(s)	454, 2122
BceAI	ACGGC	1 cut(s)	2817
BcgI	CGANNNNNNTGC	4 cut(s)	2195, 2229, 2840, 2874
BciT130I	CCWGG	3 cut(s)	597, 2360, 2541
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	2002
BcnI	CCSGG	3 cut(s)	480, 1115, 2353
BcoDI	GTCTC	7 cut(s)	90, 1231, 1934, 2279, 2368, 2608, 2629
BcuI	ACTAGT	1 cut(s)	2090
BfaI	CTAG	8 cut(s)	551, 1265, 2058, 2091, 2415, 2427, 2562, 2766
BfmI	CTRYAG	2 cut(s)	1066, 1533
BfoI	RGCGCY	2 cut(s)	349, 2352
BfuAI	ACCTGC	2 cut(s)	2329, 2447
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	443, 2136, 2863
BlsI	GCNGC	3 cut(s)	444, 2137, 2864
Bme1390I	CCNGG	6 cut(s)	480, 597, 1115, 2353, 2360, 2541
Bme18I	GGWCC	3 cut(s)	809, 1480, 1541
BmeT110I	CYCGRG	2 cut(s)	929, 2529
BmgT120I	GGNCC	5 cut(s)	809, 1480, 1541, 1667, 1690
BmiI	GGNNCC	7 cut(s)	9, 810, 1629, 2116, 2357, 2584, 2703
BmrFI	CCNGG	6 cut(s)	480, 597, 1115, 2353, 2360, 2541
BmrI	ACTGGG	1 cut(s)	2247
BmsI	GCATC	7 cut(s)	355, 574, 682, 2122, 2203, 2257, 2408
BmuI	ACTGGG	1 cut(s)	2247
BpiI	GAAGAC	3 cut(s)	409, 1197, 2178
BplI	GAGNNNNNCTC	2 cut(s)	1297, 1329
BpmI	CTGGAG	3 cut(s)	577, 2342, 2529
Bpu14I	TTCGAA	1 cut(s)	517
BpuEI	CTTGAG	3 cut(s)	971, 1365, 1670
BpuMI	CCSGG	3 cut(s)	480, 1115, 2353
BsaAI	YACGTR	2 cut(s)	1223, 2957
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	1240
BsaWI	WCCGGW	1 cut(s)	2660
BsaXI	ACNNNNNCTCC	2 cut(s)	2710, 2740
Bsc4I	CCNNNNNNNGG	8 cut(s)	602, 818, 1638, 1699, 2352, 2359, 2507, 2851
Bse118I	RCCGGY	1 cut(s)	2927
Bse1I	ACTGG	5 cut(s)	693, 1288, 1303, 1344, 2253
Bse3DI	GCAATG	2 cut(s)	550, 673
Bse8I	GATNNNNATC	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	2660
BseBI	CCWGG	3 cut(s)	597, 2360, 2541
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	8 cut(s)	602, 818, 1638, 1699, 2352, 2359, 2507, 2851
BseMI	GCAATG	2 cut(s)	550, 673
BseMII	CTCAG	7 cut(s)	360, 389, 737, 1226, 1328, 1581, 1929
BseNI	ACTGG	5 cut(s)	693, 1288, 1303, 1344, 2253
BseRI	GAGGAG	3 cut(s)	95, 2166, 2517
BseSI	GKGCMC	2 cut(s)	12, 2731
BseXI	GCAGC	2 cut(s)	454, 2122
BseYI	CCCAGC	1 cut(s)	1966
Bsh1236I	CGCG	2 cut(s)	670, 2862
BshNI	GGYRCC	2 cut(s)	7, 2114
BsiHKAI	GWGCWC	4 cut(s)	612, 1780, 2674, 2731
BsiHKCI	CYCGRG	2 cut(s)	929, 2529
BsiSI	CCGG	5 cut(s)	480, 1114, 2353, 2661, 2928
BslFI	GGGAC	3 cut(s)	575, 1608, 1985
BslI	CCNNNNNNNGG	8 cut(s)	602, 818, 1638, 1699, 2352, 2359, 2507, 2851
BsmAI	GTCTC	7 cut(s)	90, 1231, 1934, 2279, 2368, 2608, 2629
BsmBI	CGTCTC	2 cut(s)	1231, 2368
BsmFI	GGGAC	3 cut(s)	575, 1608, 1985
BsmI	GAATGC	2 cut(s)	1319, 1375
BsoBI	CYCGRG	2 cut(s)	929, 2529
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	6 cut(s)	12, 612, 1632, 1780, 2674, 2731
Bsp13I	TCCGGA	1 cut(s)	2660
Bsp19I	CCATGG	1 cut(s)	2577
BspACI	CCGC	3 cut(s)	992, 1547, 2862
BspCNI	CTCAG	7 cut(s)	361, 390, 738, 1227, 1327, 1582, 1930
BspEI	TCCGGA	1 cut(s)	2660
BspFNI	CGCG	2 cut(s)	670, 2862
BspHI	TCATGA	1 cut(s)	1033
BspLI	GGNNCC	7 cut(s)	9, 810, 1629, 2116, 2357, 2584, 2703
BspMAI	CTGCAG	1 cut(s)	1537
BspMI	ACCTGC	2 cut(s)	2329, 2447
BspPI	GGATC	3 cut(s)	152, 653, 837
BspQI	GCTCTTC	1 cut(s)	519
BspT104I	TTCGAA	1 cut(s)	517
BspT107I	GGYRCC	2 cut(s)	7, 2114
BsrDI	GCAATG	2 cut(s)	550, 673
BsrFI	RCCGGY	1 cut(s)	2927
BsrI	ACTGG	5 cut(s)	693, 1288, 1303, 1344, 2253
BssAI	RCCGGY	1 cut(s)	2927
BssNI	GRCGYC	1 cut(s)	1240
BssSI	CACGAG	1 cut(s)	2730
BssT1I	CCWWGG	5 cut(s)	314, 1693, 2268, 2577, 2866
Bst2BI	CACGAG	1 cut(s)	2730
Bst2UI	CCWGG	3 cut(s)	597, 2360, 2541
Bst4CI	ACNGT	6 cut(s)	408, 788, 1063, 1229, 2517, 2946
Bst6I	CTCTTC	5 cut(s)	213, 384, 519, 1812, 1914
BstACI	GRCGYC	1 cut(s)	1240
BstBAI	YACGTR	2 cut(s)	1223, 2957
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	1904, 2113, 2189
BstDEI	CTNAG	8 cut(s)	369, 398, 746, 1235, 1314, 1590, 1938, 1951
BstDSI	CCRYGG	3 cut(s)	275, 2577, 2833
BstENI	CCTNNNNNAGG	2 cut(s)	600, 1697
BstFNI	CGCG	2 cut(s)	670, 2862
BstH2I	RGCGCY	2 cut(s)	349, 2352
BstHHI	GCGC	5 cut(s)	348, 642, 672, 2318, 2351
BstMAI	GTCTC	7 cut(s)	90, 1231, 1934, 2279, 2368, 2608, 2629
BstNI	CCWGG	3 cut(s)	597, 2360, 2541
BstNSI	RCATGY	2 cut(s)	1018, 2191
BstSCI	CCNGG	6 cut(s)	478, 595, 1113, 2351, 2358, 2539
BstSFI	CTRYAG	2 cut(s)	1066, 1533
BstSLI	GKGCMC	2 cut(s)	12, 2731
BstUI	CGCG	2 cut(s)	670, 2862
BstV1I	GCAGC	2 cut(s)	454, 2122
BstV2I	GAAGAC	3 cut(s)	409, 1197, 2178
BstX2I	RGATCY	1 cut(s)	842
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	842
BsuI	GTATCC	1 cut(s)	51
BtgI	CCRYGG	3 cut(s)	275, 2577, 2833
BtsIMutI	CAGTG	2 cut(s)	1333, 1587
BveI	ACCTGC	2 cut(s)	2329, 2447
Cac8I	GCNNGC	3 cut(s)	1904, 2113, 2189
CaiI	CAGNNNCTG	1 cut(s)	2462
CciI	TCATGA	1 cut(s)	1033
CfoI	GCGC	5 cut(s)	348, 642, 672, 2318, 2351
Cfr10I	RCCGGY	1 cut(s)	2927
Cfr13I	GGNCC	5 cut(s)	809, 1480, 1541, 1667, 1690
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	2 cut(s)	1138, 1615
CviQI	GTAC	2 cut(s)	1138, 1615
DdeI	CTNAG	8 cut(s)	369, 398, 746, 1235, 1314, 1590, 1938, 1951
DraI	TTTAAA	1 cut(s)	1717
EaeI	YGGCCR	5 cut(s)	294, 717, 2759, 2830, 2863
Eam1104I	CTCTTC	5 cut(s)	213, 384, 519, 1812, 1914
EarI	CTCTTC	5 cut(s)	213, 384, 519, 1812, 1914
Eco130I	CCWWGG	5 cut(s)	314, 1693, 2268, 2577, 2866
Eco24I	GRGCYC	1 cut(s)	1632
Eco32I	GATATC	1 cut(s)	2697
Eco47I	GGWCC	3 cut(s)	809, 1480, 1541
Eco57I	CTGAAG	6 cut(s)	399, 471, 801, 1309, 1662, 1836
Eco88I	CYCGRG	2 cut(s)	929, 2529
EcoNI	CCTNNNNNAGG	2 cut(s)	600, 1697
EcoO109I	RGGNCCY	1 cut(s)	1690
EcoRII	CCWGG	3 cut(s)	595, 2358, 2539
EcoRV	GATATC	1 cut(s)	2697
EcoT14I	CCWWGG	5 cut(s)	314, 1693, 2268, 2577, 2866
EcoT22I	ATGCAT	2 cut(s)	498, 1377
EcoT38I	GRGCYC	1 cut(s)	1632
ErhI	CCWWGG	5 cut(s)	314, 1693, 2268, 2577, 2866
Esp3I	CGTCTC	2 cut(s)	1231, 2368
FalI	AAGNNNNNCTT	4 cut(s)	2590, 2622, 2698, 2730
FaqI	GGGAC	3 cut(s)	575, 1608, 1985
FauI	CCCGC	1 cut(s)	985
FauNDI	CATATG	2 cut(s)	655, 2220
FbaI	TGATCA	1 cut(s)	2002
Fnu4HI	GCNGC	3 cut(s)	443, 2136, 2863
FriOI	GRGCYC	1 cut(s)	1632
Fsp4HI	GCNGC	3 cut(s)	443, 2136, 2863
FspBI	CTAG	8 cut(s)	551, 1265, 2058, 2091, 2415, 2427, 2562, 2766
GlaI	GCGC	5 cut(s)	347, 641, 671, 2317, 2350
GluI	GCNGC	3 cut(s)	443, 2136, 2863
GsaI	CCCAGC	1 cut(s)	1970
GsuI	CTGGAG	3 cut(s)	577, 2342, 2529
HaeII	RGCGCY	2 cut(s)	349, 2352
HapII	CCGG	5 cut(s)	480, 1114, 2353, 2661, 2928
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	5 cut(s)	348, 642, 672, 2318, 2351
Hin1I	GRCGYC	1 cut(s)	1240
Hin6I	GCGC	5 cut(s)	346, 640, 670, 2316, 2349
HinP1I	GCGC	5 cut(s)	346, 640, 670, 2316, 2349
HindIII	AAGCTT	3 cut(s)	1904, 2162, 2712
HinfI	GANTC	8 cut(s)	83, 328, 461, 791, 1259, 1485, 2601, 2915
HpaII	CCGG	5 cut(s)	480, 1114, 2353, 2661, 2928
HphI	GGTGA	5 cut(s)	43, 617, 1472, 1714, 2257
Hpy166II	GTNNAC	7 cut(s)	34, 194, 533, 1232, 2231, 2729, 2810
Hpy8I	GTNNAC	7 cut(s)	34, 194, 533, 1232, 2231, 2729, 2810
Hpy99I	CGWCG	1 cut(s)	2127
HpyCH4III	ACNGT	6 cut(s)	408, 788, 1063, 1229, 2517, 2946
HpyCH4IV	ACGT	6 cut(s)	535, 1222, 1240, 1361, 2122, 2956
HpyF3I	CTNAG	8 cut(s)	369, 398, 746, 1235, 1314, 1590, 1938, 1951
HpySE526I	ACGT	6 cut(s)	535, 1222, 1240, 1361, 2122, 2956
Hsp92I	GRCGYC	1 cut(s)	1240
HspAI	GCGC	5 cut(s)	346, 640, 670, 2316, 2349
Kpn2I	TCCGGA	1 cut(s)	2660
Ksp22I	TGATCA	1 cut(s)	2002
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	8 cut(s)	316, 598, 901, 1116, 1627, 2361, 2530, 2701
Lsp1109I	GCAGC	2 cut(s)	454, 2122
LweI	GCATC	7 cut(s)	355, 574, 682, 2122, 2203, 2257, 2408
MaeI	CTAG	8 cut(s)	551, 1265, 2058, 2091, 2415, 2427, 2562, 2766
MaeII	ACGT	6 cut(s)	535, 1222, 1240, 1361, 2122, 2956
MaeIII	GTNAC	8 cut(s)	1094, 1223, 1472, 1761, 2037, 2049, 2891, 2940
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	1 cut(s)	842
MhlI	GDGCHC	6 cut(s)	12, 612, 1632, 1780, 2674, 2731
MlsI	TGGCCA	3 cut(s)	296, 719, 2761
MluNI	TGGCCA	3 cut(s)	296, 719, 2761
MlyI	GAGTC	2 cut(s)	92, 2610
MmeI	TCCRAC	1 cut(s)	807
Mox20I	TGGCCA	3 cut(s)	296, 719, 2761
Mph1103I	ATGCAT	2 cut(s)	498, 1377
MroI	TCCGGA	1 cut(s)	2660
MroXI	GAANNNNTTC	3 cut(s)	795, 1880, 1929
MscI	TGGCCA	3 cut(s)	296, 719, 2761
MseI	TTAA	9 cut(s)	351, 939, 1079, 1578, 1716, 1734, 2441, 2682, 2816
MslI	CAYNNNNRTG	5 cut(s)	1038, 1642, 1757, 2826, 2832
Msp20I	TGGCCA	3 cut(s)	296, 719, 2761
MspA1I	CMGCKG	1 cut(s)	1547
MspI	CCGG	5 cut(s)	480, 1114, 2353, 2661, 2928
MspR9I	CCNGG	6 cut(s)	480, 597, 1115, 2353, 2360, 2541
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	2 cut(s)	1319, 1375
MvaI	CCWGG	3 cut(s)	597, 2360, 2541
MvnI	CGCG	2 cut(s)	670, 2862
NciI	CCSGG	3 cut(s)	480, 1115, 2353
NcoI	CCATGG	1 cut(s)	2577
NdeI	CATATG	2 cut(s)	655, 2220
NlaIV	GGNNCC	7 cut(s)	9, 810, 1629, 2116, 2357, 2584, 2703
NmuCI	GTSAC	5 cut(s)	1223, 1472, 2037, 2049, 2940
NsiI	ATGCAT	2 cut(s)	498, 1377
NspI	RCATGY	2 cut(s)	1018, 2191
NspV	TTCGAA	1 cut(s)	517
PaeI	GCATGC	1 cut(s)	2191
PagI	TCATGA	1 cut(s)	1033
PaqCI	CACCTGC	1 cut(s)	2329
PciSI	GCTCTTC	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	1 cut(s)	927
PctI	GAATGC	2 cut(s)	1319, 1375
PdmI	GAANNNNTTC	3 cut(s)	795, 1880, 1929
PfeI	GAWTC	6 cut(s)	328, 461, 791, 1259, 1485, 2915
PflFI	GACNNNGTC	2 cut(s)	1478, 2177
PfoI	TCCNGGA	1 cut(s)	2358
PkrI	GCNGC	3 cut(s)	444, 2137, 2864
PleI	GAGTC	2 cut(s)	91, 2609
PpsI	GAGTC	2 cut(s)	91, 2609
Ppu21I	YACGTR	2 cut(s)	1223, 2957
PsiI	TTATAA	1 cut(s)	1254
Psp6I	CCWGG	3 cut(s)	595, 2358, 2539
PspFI	CCCAGC	1 cut(s)	1966
PspGI	CCWGG	3 cut(s)	595, 2358, 2539
PspN4I	GGNNCC	7 cut(s)	9, 810, 1629, 2116, 2357, 2584, 2703
PspPI	GGNCC	5 cut(s)	809, 1480, 1541, 1667, 1690
PstI	CTGCAG	1 cut(s)	1537
PstNI	CAGNNNCTG	1 cut(s)	2462
PsuI	RGATCY	1 cut(s)	842
PsyI	GACNNNGTC	2 cut(s)	1478, 2177
RsaI	GTAC	2 cut(s)	1139, 1616
RsaNI	GTAC	2 cut(s)	1138, 1615
RseI	CAYNNNNRTG	5 cut(s)	1038, 1642, 1757, 2826, 2832
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	9 cut(s)	351, 939, 1079, 1578, 1716, 1734, 2441, 2682, 2816
SatI	GCNGC	3 cut(s)	443, 2136, 2863
Sau96I	GGNCC	5 cut(s)	809, 1480, 1541, 1667, 1690
SchI	GAGTC	2 cut(s)	92, 2610
ScrFI	CCNGG	6 cut(s)	480, 597, 1115, 2353, 2360, 2541
SduI	GDGCHC	6 cut(s)	12, 612, 1632, 1780, 2674, 2731
SfaNI	GCATC	7 cut(s)	355, 574, 682, 2122, 2203, 2257, 2408
SfcI	CTRYAG	2 cut(s)	1066, 1533
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	3 cut(s)	809, 1480, 1541
SmiMI	CAYNNNNRTG	5 cut(s)	1038, 1642, 1757, 2826, 2832
SmlI	CTYRAG	3 cut(s)	950, 1380, 1685
SmoI	CTYRAG	3 cut(s)	950, 1380, 1685
SpeI	ACTAGT	1 cut(s)	2090
SphI	GCATGC	1 cut(s)	2191
SsiI	CCGC	3 cut(s)	992, 1547, 2862
SspI	AATATT	3 cut(s)	235, 265, 2882
SspMI	CTAG	8 cut(s)	551, 1265, 2058, 2091, 2415, 2427, 2562, 2766
StyD4I	CCNGG	6 cut(s)	478, 595, 1113, 2351, 2358, 2539
StyI	CCWWGG	5 cut(s)	314, 1693, 2268, 2577, 2866
TaaI	ACNGT	6 cut(s)	408, 788, 1063, 1229, 2517, 2946
TaiI	ACGT	6 cut(s)	538, 1225, 1243, 1364, 2125, 2959
TatI	WGTACW	1 cut(s)	1614
TauI	GCSGC	1 cut(s)	2865
TfiI	GAWTC	6 cut(s)	328, 461, 791, 1259, 1485, 2915
Tru1I	TTAA	9 cut(s)	351, 939, 1079, 1578, 1716, 1734, 2441, 2682, 2816
Tru9I	TTAA	9 cut(s)	351, 939, 1079, 1578, 1716, 1734, 2441, 2682, 2816
TscAI	CASTG	2 cut(s)	1333, 1594
TseFI	GTSAC	5 cut(s)	1223, 1472, 2037, 2049, 2940
TseI	GCWGC	2 cut(s)	442, 2135
Tsp45I	GTSAC	5 cut(s)	1223, 1472, 2037, 2049, 2940
TspGWI	ACGGA	4 cut(s)	292, 2297, 2403, 2450
TspRI	CASTG	2 cut(s)	1333, 1594
Tth111I	GACNNNGTC	2 cut(s)	1478, 2177
VneI	GTGCAC	1 cut(s)	2727
VpaK11BI	GGWCC	3 cut(s)	809, 1480, 1541
XagI	CCTNNNNNAGG	2 cut(s)	600, 1697
XapI	RAATTY	7 cut(s)	211, 488, 1029, 1163, 1197, 1526, 2450
XbaI	TCTAGA	2 cut(s)	1264, 2765
XceI	RCATGY	2 cut(s)	1018, 2191
XcmI	CCANNNNNNNNNTGG	4 cut(s)	680, 1641, 2712, 2852
XmnI	GAANNNNTTC	3 cut(s)	795, 1880, 1929
XspI	CTAG	8 cut(s)	551, 1265, 2058, 2091, 2415, 2427, 2562, 2766
ZraI	GACGTC	1 cut(s)	1241
Zsp2I	ATGCAT	2 cut(s)	498, 1377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.