Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

19209443 .. 19215692

Gene Structure 6250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1172900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2919 bp

ATGGGGGTGCCCTCGTTTTTCAAATGGCTGGTGAACAAGTATCCCAAAGTGGTGGTCAAAGCTATCGAAGGTCAGAGAGAGGAGTCTCCAAACCCAAACCCTACTAACTTGGAGTTCGATAACTTTTATCTTGACATGAATGGGATCATCCATCCTTGCTTCCACCCAGAAGCAGCTGACGATGATGATGATGGACTTTTGCCACCAGCAAATTTTGAAGAGGTGTTCATCAATATTTTTGAATATATTGATATACTTTTCAATATTGTTAGGCCACGGAAGCTACTATACTTGGCCATAGATGGAGTTGCTCCAAGGGCTAAAATGAATCAACAGCGAATGAGGCGCTTTAAGTCAGCGAAGGACGCTGAGTTCGCTGAAGTTGAAGAAGAGAAGCTGAGAAGACAGTTTGAATTGGAAAGCAAACAAGTCCTACCAAAGCAGCAGTCCGAAGTATCAGATTCTAATATAATAACCCCCGGAACTGAATTTATGCATAAATTGTCAAAGGCTCTTCGAAACTATATCAGTTTACGTTTGAGCAATGATCTAGGCTGGAGGGACATCGAGATAATTCTGTCTGATGCCAATGCTCCTGGGGAAGGTGAGCACAAAATAATGTCATTCATACGCTCACAGCGCAATCTTCCTTCATATGATCCAAACACGCGCCATTGCTTATATGGACTGGATGCTGATCTTGTCATGTTGGCTTTGGCGACGCATGAGCTTCACTTTTCCATATTGAGAGAGGATGTTCTACATAATGAACAGCGTCATACAAACTGTGAATCTATTCGAGAGAAAGGTCCATTTTCAGGAAAGTCAGATAACAAAAAAAGATCCATGCTAAAAAAGCCCTATCAGTTTCTTCATGTTTGGATTTTGAGGGAATACTTGGAGCTTGATTTGAAAATTGACGACCCACCCGAGAACTTTAAGTTTGATCTTGAGCGTATAATTGATGACTTCATCTTCATGTACTTTTTTGCGGGAAATGATTTTCTGCCCCACATGCCAACTTTGGAAATTCATGAGGGTGCAATTGACTTGCTGATGACTGTCTATAAGAAAGAACTAAAAAATCTTGGTGGTTATATGGTTGATATGCTCCGGGTCAATGACAAGAAATCAGGGTACATCAAGCTATCCAGAGTTGAGAAATTCATCCTTCTTGTTGGTTCTTATGAAGACAAAATTTTCAAGAAAAGATCAGAACTACGTGACCAGGACGAAGTTGATACTAGAAGTACAATTACTGGTTCGAGCAATAATCAGGTATTCCTCAGTGGAGAAGAATTGGAAGTTTGGTCAGATGGAACGTCTGACATTATGCATTCTCAAGTTGTAGGAAATACAAAGGAGTTGAAGAAAAAATTGAAAGATAACATCAGAAGGAAATCTGATCTGTTCAAGAATGGTGATTTGGGGACTGACAAGGTCCGATTCGCTGTGGGAGGCTATAAGGAAAGATATTACAAATACAAATTTTCTGCAGAAGGTCCAGAGGATATTGAAAGGAAAAGGAAGGAAGTAGTTAAATGCTACACTGAAGGACTGCTCTGGGTTTTATTGTACTATTTTTCGGAGCCCCCATCATGGACATGGTTTTATCCTTTCCATTACGGGCCATTTGCTTCAGACCTCAAGGGCCTCGGTCAGGTGAAAGCGAAGTTTCATAAAGGTTTCCCTTTTAAGCCTATTGATACTCTCATGGCTGTGTTACCTCCAAGAAGCGCTCATGCACTTCCTAAAGATTATCAGAAACTAATGACTGAAGAGAGTTCCGGCATTATTGACTTTTATCCTACTGATTTTGAAATCGACATGGATGGGAAACGCTTCACATGGCAGGGTATTTGCAAGCTTCCATTTATTGAAGAGGAACGCCTTCTGTCTGAGACTAAAAAGTTAGACAAAGAACTGGTGGGGGACGAAAGAGATCGAAATACAGAAAAACCTGGTCAATTATTTGTGCGAAGAACACACAATTTGGTGTCACAAATTATGTCACTATCTAGCAAGGAAAGTTGGTCTATCAAGATTGACACTAGTTTGAGTTTTGGAGTAGGTGGCACCATACGTCGTCTTGATGCTGCCATGAGTGAAGGAGGAGATTACAAGCTTCAAGAAGACCATGTCGTTTGCATGCTATACGAGCTTCCCAATAGTGATCCACATATGCCTCGTTTACTTGATGGTGTAAAGCATCCCAGTAAGACAATCACTGAGGATGACCTTATGGAGACAAAATTATGGCATGAATATCAGGGAAGCGCACCTACCACCACCACCACTTCCAGCACCCGGCTCCAGGAGAGGTATGGAGGCTTCCAGAACAATGCTAGATGCACTTCTAGCTCTACGGATTTAATACACAAATTTGCAGGTTCTGGATGGGGTTGTGGTAGAGGGAAAGAAGTTGCTAATCCTAATTCTGGAGAACGGTTTTATGCTCCTCGAGGAATACCTGGCGAAAGAGTAATGTCATCTAGCTCATATTCAGCCATGGGTTCCACAGACTACAAAAGAGTCTCTTTTCAAGGGAGATCAGTCTCTAATGATAAGTGGAGGGCAGTTGGTTATGTTTCTGGAGATCGAACACAAGGCTTTAAGGATTTGAAGATTTCGGAGCCAAGCCAAGCTTGGAGGCCAAAGGCAAGAGGACAACCAGCGAACAACGCTTTTTGGCCATCTAGAAATAGTTTCGGACATAACACAAACCATTCTTGGCAGAGTTCACAAGTAAGTCATAGTCATGGCCGCGGCAGAGGCCAGCAGCAGGGTGGTCGTGGCCAAGGCCAACAGGAATATTGGAAACGTTACGCACCTTTTTCTGCTAACGATTCATCACAAGCCGGTGGGAGATCACAGTTTGTTCCACGTAGTTCTGTCAATCAAAGAAGCGCCTGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

973

Amino Acids

111.56

Weight (kDa)

7.9

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 252	1.1e-99	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	314 - 747	9.7e-144	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	2460
Acc36I	ACCTGC	1 cut(s)	2378
AccB1I	GGYRCC	2 cut(s)	7, 2075
AccII	CGCG	2 cut(s)	670, 2766
AciI	CCGC	3 cut(s)	992, 2764, 2766
AclI	AACGTT	1 cut(s)	2821
AclWI	GGATC	4 cut(s)	152, 653, 837, 2168
AcoI	YGGCCR	4 cut(s)	294, 2690, 2761, 2794
AcsI	RAATTY	7 cut(s)	211, 488, 1029, 1163, 1197, 1487, 2381
AcuI	CTGAAG	4 cut(s)	399, 1572, 1623, 1797
AfaI	GTAC	4 cut(s)	983, 1139, 1252, 1577
AfeI	AGCGCT	1 cut(s)	1738
AfiI	CCNNNNNNNGG	8 cut(s)	602, 818, 1599, 1660, 2307, 2314, 2438, 2782
AhlI	ACTAGT	1 cut(s)	2051
AjnI	CCWGG	6 cut(s)	595, 1227, 1960, 2313, 2470, 2909
AjuI	GAANNNNNNNTTGG	2 cut(s)	1409, 1441
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	5 cut(s)	90, 1895, 2240, 2539, 2560
AlwI	GGATC	4 cut(s)	152, 653, 837, 2168
AlwNI	CAGNNNCTG	1 cut(s)	2393
Ama87I	CYCGRG	2 cut(s)	929, 2460
Aor51HI	AGCGCT	1 cut(s)	1738
ApeKI	GCWGC	4 cut(s)	173, 442, 2096, 2779
ApoI	RAATTY	7 cut(s)	211, 488, 1029, 1163, 1197, 1487, 2381
ArsI	GACNNNNNNTTYG	6 cut(s)	39, 71, 356, 388, 431, 463
Asp700I	GAANNNNTTC	3 cut(s)	795, 1841, 1890
AspLEI	GCGC	6 cut(s)	348, 642, 672, 1739, 2279, 2909
AspS9I	GGNCC	5 cut(s)	809, 1441, 1502, 1628, 1651
AsuC2I	CCSGG	3 cut(s)	480, 1115, 2308
AsuHPI	GGTGA	4 cut(s)	43, 617, 1433, 1675
AsuII	TTCGAA	1 cut(s)	517
AvaI	CYCGRG	2 cut(s)	929, 2460
AvaII	GGWCC	3 cut(s)	809, 1441, 1502
BaeGI	GKGCMC	1 cut(s)	12
BalI	TGGCCA	3 cut(s)	296, 2692, 2796
BanI	GGYRCC	2 cut(s)	7, 2075
BanII	GRGCYC	1 cut(s)	1593
BarI	GAAGNNNNNNTAC	8 cut(s)	272, 304, 1240, 1272, 2266, 2298, 2315, 2347
BbsI	GAAGAC	3 cut(s)	409, 1197, 2139
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	4 cut(s)	185, 454, 2083, 2791
BccI	CCATC	9 cut(s)	159, 185, 296, 1310, 1603, 1826, 2192, 2391, 2701
BcgI	CGANNNNNNTGC	2 cut(s)	2771, 2805
BciT130I	CCWGG	6 cut(s)	597, 1229, 1962, 2315, 2472, 2911
BciVI	GTATCC	1 cut(s)	51
BcnI	CCSGG	3 cut(s)	480, 1115, 2308
BcoDI	GTCTC	5 cut(s)	90, 1895, 2240, 2539, 2560
BcuI	ACTAGT	1 cut(s)	2051
BfaI	CTAG	8 cut(s)	551, 1245, 2019, 2052, 2346, 2358, 2493, 2697
BfmI	CTRYAG	1 cut(s)	1494
BfoI	RGCGCY	3 cut(s)	349, 1740, 2910
BfuAI	ACCTGC	1 cut(s)	2378
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	6 cut(s)	174, 443, 2097, 2764, 2767, 2780
BlsI	GCNGC	6 cut(s)	175, 444, 2098, 2765, 2768, 2781
Bme1390I	CCNGG	9 cut(s)	480, 597, 1115, 1229, 1962, 2308, 2315, 2472, 2911
Bme18I	GGWCC	3 cut(s)	809, 1441, 1502
BmeT110I	CYCGRG	2 cut(s)	929, 2460
BmgT120I	GGNCC	5 cut(s)	809, 1441, 1502, 1628, 1651
BmiI	GGNNCC	6 cut(s)	9, 1590, 2077, 2312, 2515, 2634
BmrFI	CCNGG	9 cut(s)	480, 597, 1115, 1229, 1962, 2308, 2315, 2472, 2911
BmrI	ACTGGG	1 cut(s)	2208
BmsI	GCATC	5 cut(s)	574, 682, 2083, 2218, 2339
BmuI	ACTGGG	1 cut(s)	2208
BpiI	GAAGAC	3 cut(s)	409, 1197, 2139
BpmI	CTGGAG	4 cut(s)	577, 2297, 2460, 2613
Bpu14I	TTCGAA	1 cut(s)	517
BpuEI	CTTGAG	3 cut(s)	971, 1326, 1631
BpuMI	CCSGG	3 cut(s)	480, 1115, 2308
BsaAI	YACGTR	2 cut(s)	1223, 2885
BsaBI	GATNNNNATC	1 cut(s)	696
BsaJI	CCNNGG	8 cut(s)	275, 314, 478, 596, 1654, 2508, 2764, 2797
Bsc4I	CCNNNNNNNGG	8 cut(s)	602, 818, 1599, 1660, 2307, 2314, 2438, 2782
Bse118I	RCCGGY	1 cut(s)	2858
Bse1I	ACTGG	4 cut(s)	693, 1264, 1929, 2214
Bse3DI	GCAATG	2 cut(s)	550, 673
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	6 cut(s)	597, 1229, 1962, 2315, 2472, 2911
BseDI	CCNNGG	8 cut(s)	275, 314, 478, 596, 1654, 2508, 2764, 2797
BseGI	GGATG	9 cut(s)	147, 151, 697, 760, 1167, 1837, 2209, 2239, 2402
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	8 cut(s)	602, 818, 1599, 1660, 2307, 2314, 2438, 2782
BseMI	GCAATG	2 cut(s)	550, 673
BseMII	CTCAG	5 cut(s)	360, 389, 1300, 1890, 2220
BseNI	ACTGG	4 cut(s)	693, 1264, 1929, 2214
BseRI	GAGGAG	3 cut(s)	95, 2127, 2448
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	4 cut(s)	185, 454, 2083, 2791
Bsh1236I	CGCG	2 cut(s)	670, 2766
BshNI	GGYRCC	2 cut(s)	7, 2075
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	2 cut(s)	929, 2460
BsiSI	CCGG	5 cut(s)	480, 1114, 1788, 2308, 2859
BslFI	GGGAC	3 cut(s)	575, 1444, 1946
BslI	CCNNNNNNNGG	8 cut(s)	602, 818, 1599, 1660, 2307, 2314, 2438, 2782
BsmAI	GTCTC	5 cut(s)	90, 1895, 2240, 2539, 2560
BsmFI	GGGAC	3 cut(s)	575, 1444, 1946
BsmI	GAATGC	1 cut(s)	1336
BsoBI	CYCGRG	2 cut(s)	929, 2460
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	12, 612, 1593
Bsp19I	CCATGG	1 cut(s)	2508
BspACI	CCGC	3 cut(s)	992, 2764, 2766
BspCNI	CTCAG	5 cut(s)	361, 390, 1299, 1891, 2221
BspFNI	CGCG	2 cut(s)	670, 2766
BspHI	TCATGA	1 cut(s)	1033
BspLI	GGNNCC	6 cut(s)	9, 1590, 2077, 2312, 2515, 2634
BspMAI	CTGCAG	1 cut(s)	1498
BspMI	ACCTGC	1 cut(s)	2378
BspPI	GGATC	4 cut(s)	152, 653, 837, 2168
BspQI	GCTCTTC	1 cut(s)	519
BspT104I	TTCGAA	1 cut(s)	517
BspT107I	GGYRCC	2 cut(s)	7, 2075
BsrDI	GCAATG	2 cut(s)	550, 673
BsrFI	RCCGGY	1 cut(s)	2858
BsrI	ACTGG	4 cut(s)	693, 1264, 1929, 2214
BssAI	RCCGGY	1 cut(s)	2858
BssECI	CCNNGG	8 cut(s)	275, 314, 478, 596, 1654, 2508, 2764, 2797
BssT1I	CCWWGG	3 cut(s)	314, 2508, 2797
Bst2UI	CCWGG	6 cut(s)	597, 1229, 1962, 2315, 2472, 2911
Bst4CI	ACNGT	5 cut(s)	408, 788, 1063, 2448, 2874
Bst6I	CTCTTC	5 cut(s)	213, 384, 519, 1773, 1875
BstBAI	YACGTR	2 cut(s)	1223, 2885
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	1865, 2150, 2777
BstDEI	CTNAG	5 cut(s)	369, 398, 1286, 1899, 2229
BstDSI	CCRYGG	3 cut(s)	275, 2508, 2764
BstENI	CCTNNNNNAGG	2 cut(s)	600, 1658
BstF5I	GGATG	9 cut(s)	147, 151, 697, 760, 1167, 1837, 2209, 2239, 2402
BstFNI	CGCG	2 cut(s)	670, 2766
BstH2I	RGCGCY	3 cut(s)	349, 1740, 2910
BstHHI	GCGC	6 cut(s)	348, 642, 672, 1739, 2279, 2909
BstMAI	GTCTC	5 cut(s)	90, 1895, 2240, 2539, 2560
BstNI	CCWGG	6 cut(s)	597, 1229, 1962, 2315, 2472, 2911
BstNSI	RCATGY	2 cut(s)	1018, 2152
BstSCI	CCNGG	9 cut(s)	478, 595, 1113, 1227, 1960, 2306, 2313, 2470, 2909
BstSFI	CTRYAG	1 cut(s)	1494
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	2 cut(s)	670, 2766
BstV1I	GCAGC	4 cut(s)	185, 454, 2083, 2791
BstV2I	GAAGAC	3 cut(s)	409, 1197, 2139
BstX2I	RGATCY	1 cut(s)	842
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	842
BsuI	GTATCC	1 cut(s)	51
BtgI	CCRYGG	3 cut(s)	275, 2508, 2764
BtsCI	GGATG	9 cut(s)	147, 151, 697, 760, 1167, 1837, 2209, 2239, 2402
BtsIMutI	CAGTG	3 cut(s)	1294, 1548, 2226
BveI	ACCTGC	1 cut(s)	2378
Cac8I	GCNNGC	3 cut(s)	1865, 2150, 2777
CaiI	CAGNNNCTG	1 cut(s)	2393
CciI	TCATGA	1 cut(s)	1033
CfoI	GCGC	6 cut(s)	348, 642, 672, 1739, 2279, 2909
Cfr10I	RCCGGY	1 cut(s)	2858
Cfr13I	GGNCC	5 cut(s)	809, 1441, 1502, 1628, 1651
Cfr42I	CCGCGG	1 cut(s)	2767
CseI	GACGC	3 cut(s)	374, 730, 764
CsiI	ACCWGGT	1 cut(s)	1960
Csp6I	GTAC	4 cut(s)	982, 1138, 1251, 1576
CviQI	GTAC	4 cut(s)	982, 1138, 1251, 1576
DdeI	CTNAG	5 cut(s)	369, 398, 1286, 1899, 2229
EaeI	YGGCCR	4 cut(s)	294, 2690, 2761, 2794
Eam1104I	CTCTTC	5 cut(s)	213, 384, 519, 1773, 1875
EarI	CTCTTC	5 cut(s)	213, 384, 519, 1773, 1875
Eco130I	CCWWGG	3 cut(s)	314, 2508, 2797
Eco24I	GRGCYC	1 cut(s)	1593
Eco47I	GGWCC	3 cut(s)	809, 1441, 1502
Eco47III	AGCGCT	1 cut(s)	1738
Eco57I	CTGAAG	4 cut(s)	399, 1572, 1623, 1797
Eco88I	CYCGRG	2 cut(s)	929, 2460
EcoNI	CCTNNNNNAGG	2 cut(s)	600, 1658
EcoO109I	RGGNCCY	1 cut(s)	1651
EcoRII	CCWGG	6 cut(s)	595, 1227, 1960, 2313, 2470, 2909
EcoT14I	CCWWGG	3 cut(s)	314, 2508, 2797
EcoT22I	ATGCAT	2 cut(s)	498, 1338
EcoT38I	GRGCYC	1 cut(s)	1593
ErhI	CCWWGG	3 cut(s)	314, 2508, 2797
FalI	AAGNNNNNCTT	4 cut(s)	2521, 2553, 2629, 2661
FaqI	GGGAC	3 cut(s)	575, 1444, 1946
FauI	CCCGC	1 cut(s)	985
FauNDI	CATATG	2 cut(s)	655, 2181
Fnu4HI	GCNGC	6 cut(s)	174, 443, 2097, 2764, 2767, 2780
FokI	GGATG	9 cut(s)	134, 138, 704, 767, 1154, 1844, 2196, 2246, 2409
FriOI	GRGCYC	1 cut(s)	1593
Fsp4HI	GCNGC	6 cut(s)	174, 443, 2097, 2764, 2767, 2780
FspBI	CTAG	8 cut(s)	551, 1245, 2019, 2052, 2346, 2358, 2493, 2697
GlaI	GCGC	6 cut(s)	347, 641, 671, 1738, 2278, 2908
GluI	GCNGC	6 cut(s)	174, 443, 2097, 2764, 2767, 2780
GsuI	CTGGAG	4 cut(s)	577, 2297, 2460, 2613
HaeII	RGCGCY	3 cut(s)	349, 1740, 2910
HapII	CCGG	5 cut(s)	480, 1114, 1788, 2308, 2859
HgaI	GACGC	3 cut(s)	374, 730, 764
HhaI	GCGC	6 cut(s)	348, 642, 672, 1739, 2279, 2909
Hin6I	GCGC	6 cut(s)	346, 640, 670, 1737, 2277, 2907
HinP1I	GCGC	6 cut(s)	346, 640, 670, 1737, 2277, 2907
HindIII	AAGCTT	3 cut(s)	1865, 2123, 2643
HinfI	GANTC	7 cut(s)	83, 328, 461, 791, 1446, 2532, 2846
HpaII	CCGG	5 cut(s)	480, 1114, 1788, 2308, 2859
HphI	GGTGA	4 cut(s)	43, 617, 1433, 1675
Hpy166II	GTNNAC	4 cut(s)	34, 533, 2192, 2741
Hpy8I	GTNNAC	4 cut(s)	34, 533, 2192, 2741
Hpy99I	CGWCG	2 cut(s)	724, 2088
HpyCH4III	ACNGT	5 cut(s)	408, 788, 1063, 2448, 2874
HpyCH4IV	ACGT	6 cut(s)	535, 1222, 1322, 2083, 2821, 2884
HpyCH4V	TGCA	9 cut(s)	496, 1043, 1336, 1496, 1745, 1863, 2148, 2352, 2387
HpyF3I	CTNAG	5 cut(s)	369, 398, 1286, 1899, 2229
HpySE526I	ACGT	6 cut(s)	535, 1222, 1322, 2083, 2821, 2884
HspAI	GCGC	6 cut(s)	346, 640, 670, 1737, 2277, 2907
KspI	CCGCGG	1 cut(s)	2767
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	8 cut(s)	316, 598, 901, 1116, 1588, 2316, 2461, 2632
Lsp1109I	GCAGC	4 cut(s)	185, 454, 2083, 2791
LweI	GCATC	5 cut(s)	574, 682, 2083, 2218, 2339
MabI	ACCWGGT	1 cut(s)	1960
MaeI	CTAG	8 cut(s)	551, 1245, 2019, 2052, 2346, 2358, 2493, 2697
MaeII	ACGT	6 cut(s)	535, 1222, 1322, 2083, 2821, 2884
MaeIII	GTNAC	5 cut(s)	1223, 1722, 1998, 2010, 2822
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	1 cut(s)	842
MhlI	GDGCHC	3 cut(s)	12, 612, 1593
MlsI	TGGCCA	3 cut(s)	296, 2692, 2796
MluNI	TGGCCA	3 cut(s)	296, 2692, 2796
MlyI	GAGTC	2 cut(s)	92, 2541
Mox20I	TGGCCA	3 cut(s)	296, 2692, 2796
Mph1103I	ATGCAT	2 cut(s)	498, 1338
MroXI	GAANNNNTTC	3 cut(s)	795, 1841, 1890
MscI	TGGCCA	3 cut(s)	296, 2692, 2796
MseI	TTAA	6 cut(s)	351, 939, 1539, 1695, 2372, 2613
MslI	CAYNNNNRTG	5 cut(s)	977, 1038, 1603, 1718, 2757
Msp20I	TGGCCA	3 cut(s)	296, 2692, 2796
MspA1I	CMGCKG	2 cut(s)	176, 2766
MspI	CCGG	5 cut(s)	480, 1114, 1788, 2308, 2859
MspR9I	CCNGG	9 cut(s)	480, 597, 1115, 1229, 1962, 2308, 2315, 2472, 2911
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	1 cut(s)	1336
MvaI	CCWGG	6 cut(s)	597, 1229, 1962, 2315, 2472, 2911
MvnI	CGCG	2 cut(s)	670, 2766
NciI	CCSGG	3 cut(s)	480, 1115, 2308
NcoI	CCATGG	1 cut(s)	2508
NdeI	CATATG	2 cut(s)	655, 2181
NlaIV	GGNNCC	6 cut(s)	9, 1590, 2077, 2312, 2515, 2634
NmuCI	GTSAC	3 cut(s)	1223, 1998, 2010
NsiI	ATGCAT	2 cut(s)	498, 1338
NspI	RCATGY	2 cut(s)	1018, 2152
NspV	TTCGAA	1 cut(s)	517
PaeI	GCATGC	1 cut(s)	2152
PaeR7I	CTCGAG	1 cut(s)	2460
PagI	TCATGA	1 cut(s)	1033
PciSI	GCTCTTC	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	1 cut(s)	927
PctI	GAATGC	1 cut(s)	1336
PdmI	GAANNNNTTC	3 cut(s)	795, 1841, 1890
PfeI	GAWTC	5 cut(s)	328, 461, 791, 1446, 2846
PflFI	GACNNNGTC	2 cut(s)	1439, 2138
PfoI	TCCNGGA	1 cut(s)	2313
PkrI	GCNGC	6 cut(s)	175, 444, 2098, 2765, 2768, 2781
PleI	GAGTC	2 cut(s)	91, 2540
PpsI	GAGTC	2 cut(s)	91, 2540
Ppu21I	YACGTR	2 cut(s)	1223, 2885
Psp1406I	AACGTT	1 cut(s)	2821
Psp6I	CCWGG	6 cut(s)	595, 1227, 1960, 2313, 2470, 2909
PspGI	CCWGG	6 cut(s)	595, 1227, 1960, 2313, 2470, 2909
PspN4I	GGNNCC	6 cut(s)	9, 1590, 2077, 2312, 2515, 2634
PspPI	GGNCC	5 cut(s)	809, 1441, 1502, 1628, 1651
PspXI	VCTCGAGB	1 cut(s)	2460
PstI	CTGCAG	1 cut(s)	1498
PstNI	CAGNNNCTG	1 cut(s)	2393
PsuI	RGATCY	1 cut(s)	842
PsyI	GACNNNGTC	2 cut(s)	1439, 2138
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	4 cut(s)	983, 1139, 1252, 1577
RsaNI	GTAC	4 cut(s)	982, 1138, 1251, 1576
RseI	CAYNNNNRTG	5 cut(s)	977, 1038, 1603, 1718, 2757
SacII	CCGCGG	1 cut(s)	2767
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	6 cut(s)	351, 939, 1539, 1695, 2372, 2613
SatI	GCNGC	6 cut(s)	174, 443, 2097, 2764, 2767, 2780
Sau96I	GGNCC	5 cut(s)	809, 1441, 1502, 1628, 1651
SchI	GAGTC	2 cut(s)	92, 2541
ScrFI	CCNGG	9 cut(s)	480, 597, 1115, 1229, 1962, 2308, 2315, 2472, 2911
SduI	GDGCHC	3 cut(s)	12, 612, 1593
SexAI	ACCWGGT	1 cut(s)	1960
SfaNI	GCATC	5 cut(s)	574, 682, 2083, 2218, 2339
SfcI	CTRYAG	1 cut(s)	1494
Sfr274I	CTCGAG	1 cut(s)	2460
Sfr303I	CCGCGG	1 cut(s)	2767
SfuI	TTCGAA	1 cut(s)	517
SgrBI	CCGCGG	1 cut(s)	2767
SinI	GGWCC	3 cut(s)	809, 1441, 1502
SlaI	CTCGAG	1 cut(s)	2460
SmiMI	CAYNNNNRTG	5 cut(s)	977, 1038, 1603, 1718, 2757
SmlI	CTYRAG	4 cut(s)	950, 1341, 1646, 2460
SmoI	CTYRAG	4 cut(s)	950, 1341, 1646, 2460
SpeI	ACTAGT	1 cut(s)	2051
SphI	GCATGC	1 cut(s)	2152
SsiI	CCGC	3 cut(s)	992, 2764, 2766
SspI	AATATT	3 cut(s)	235, 265, 2813
SspMI	CTAG	8 cut(s)	551, 1245, 2019, 2052, 2346, 2358, 2493, 2697
StyD4I	CCNGG	9 cut(s)	478, 595, 1113, 1227, 1960, 2306, 2313, 2470, 2909
StyI	CCWWGG	3 cut(s)	314, 2508, 2797
TaaI	ACNGT	5 cut(s)	408, 788, 1063, 2448, 2874
TaiI	ACGT	6 cut(s)	538, 1225, 1325, 2086, 2824, 2887
TaqII	GACCGA	1 cut(s)	1646
TatI	WGTACW	3 cut(s)	981, 1250, 1575
TauI	GCSGC	2 cut(s)	2766, 2769
TfiI	GAWTC	5 cut(s)	328, 461, 791, 1446, 2846
Tru1I	TTAA	6 cut(s)	351, 939, 1539, 1695, 2372, 2613
Tru9I	TTAA	6 cut(s)	351, 939, 1539, 1695, 2372, 2613
TscAI	CASTG	3 cut(s)	1294, 1555, 2233
TseFI	GTSAC	3 cut(s)	1223, 1998, 2010
TseI	GCWGC	4 cut(s)	173, 442, 2096, 2779
Tsp45I	GTSAC	3 cut(s)	1223, 1998, 2010
TspGWI	ACGGA	2 cut(s)	292, 2381
TspRI	CASTG	3 cut(s)	1294, 1555, 2233
Tth111I	GACNNNGTC	2 cut(s)	1439, 2138
VpaK11BI	GGWCC	3 cut(s)	809, 1441, 1502
XagI	CCTNNNNNAGG	2 cut(s)	600, 1658
XapI	RAATTY	7 cut(s)	211, 488, 1029, 1163, 1197, 1487, 2381
XbaI	TCTAGA	1 cut(s)	2696
XceI	RCATGY	2 cut(s)	1018, 2152
XcmI	CCANNNNNNNNNTGG	5 cut(s)	680, 1602, 2321, 2643, 2783
XhoI	CTCGAG	1 cut(s)	2460
XmnI	GAANNNNTTC	3 cut(s)	795, 1841, 1890
XspI	CTAG	8 cut(s)	551, 1245, 2019, 2052, 2346, 2358, 2493, 2697
Zsp2I	ATGCAT	2 cut(s)	498, 1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.