Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

45262803 .. 45269024

Gene Structure 6222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2949 bp

ATGGGGGTTTCATCGTTTTTTCGTTGGTTGGTAAACAAGTACCCTAAAGTGGTGGTGAAAGCCATTGAAGCGGGAGAGGATCAGTTTCTAGATGCAAGCTTGCCAAACCCAAATGGCATAGAGTTCGATAACCTGTTTCTAGACATGAATGGGATTATCCATCCCTGCTTTCATCCGGAAGAAGATGATGATGATGGTTATGGACTTGCACCACCAAGAACTTATGAAGATGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATGGAGTTGCTCCGAGGGCTAAAATGAATCAACAGCGCGCCAGGCGTTTTAAGTTGGCAATGGACAAGAATCTTGCTGAGGCTGAAGAAGAGAAACTAAGACAGCAATTTGAAAAGGAAGGGAAAAAAATCCTACTAGAACAGGAGTCTGAAGTTTCTGATTCTAATATAATCACCCCTGGAACGGATTTCATGTACAAGTTATCCAAGGCTCTTCAAAGCTACATCAATCTACGTTTAAGCCAAGATTCAGGCTGGAGGGACATCAAGGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGATGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGTATGGTCTGGATGCGGATCTTATAATGTTGTCTTTGGCAACACATGAAGTTCACCTTTCCATACTAAGAGAGAATTTACTAATCCAAAACCAGCAGCAACATGCAAACAGTCAATTGACAATTTCATCTGCAATATCAGACAAAAGAACAGCGCACATGATGAAAAAGCCTTATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAGTGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGTATCATTGATGATTTCATCTTTATATGTTTCTTCGCGGGAAATGATTTTTTACCCCACATGCCAACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCAGGTTCATGACAAGAAGTTGGGGTACATCAAACTATCTAGAGTTGAGAAATTTGTTCTCCTTATTGGAGCATTTGAAGAGAAAATATTCAAGAAAAGATCAGATATACGAGAACGTAAACTCAGACGTCTTTGCTATAACAATGATTGGATAGAGGAAGACATTGATGCTGGAAATTCAAACTTTAATTTCGAGGCAATTGAAGAATCTGCAGTTGTTTCAGTGGATAATGTTTCATCTTCCAAAATAGTGGAAAACACAAAGGAATTCAAGCAAAAATTGAAGGCCAGCATTAGAAGAAAATCTGATCTGTTTAGGAATGGTGATTTTGGCACTGACAAAGTACGATTGGGTGCTACAGGATTCAAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCCGGAGGAGATTGAAAACAAAAGGAAGGAAGTAGTTAAAAGCTACACAGAAGGACTGCTCTGGGTTCTTTTATACTACTTTTCCGGCCCCCCATCGTGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAGCTCAGGTCAAACCACAATTTGAGAAAGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGCGCTCACGCACTTCCTAAGGATTATAGGACACTTATGATGGAAGAGTGTTCCACAATCATTGATTTTTACCCTTCTGACTTCGAAATTGACATGGATGGGAAGAGATTTACGTGGCAGGGTATCTGCAAACTTCCCTTTATAGAAGAATCCCGACTTCTACATGAGACCAGAAAATTGGAAATGGAACTAATGGCAGAAGAAATTGACAGGAATGCTGAGAAACTTGATCAGTTATTCATGCGAAGCACCCACGGTATGGCATCACAAATTGTTTCACTGTCTAATGGTGACAATCAGTCGATCAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCGGCAGCTTGATGACAATGATGCCAAGGTCAAAGAAAGAGATGATAGCTCTGAAGAAGACTCTGTCTTATGTACCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCGTTTACTTGATGGTGTACAACATCCTTCCAAGACAATCAATGAACACGAGCTTATGGAAACAGTTCTATGGCATGAATGTCAGGGAAATGTGACCTCCCGCAGGTGTGTCAGTCCATCCAGCAAGTACAGGCAAGGTTTAGATAACCAAATGATTTGGGAAATGCAAGTTTTCACAATGGTAAATTCACTTCAAGCTCTCCTGCCAATTCAATTCACAAATTTGCTGGTTCTGGATGGGTGTGGTAGAGGAACAAATGGTAGTTCTAAGTCAGGAGACCGAGTTTATGCTCCAAAAGGAATATCCAGGGATCAAAGAGTAGTGTCATCTCCTAGCTCATACTATGCCAAGGGTACCTCAGATTATAGAAAAGGCACATTACAACATGGCTTCAGGGAATTAAATATATCAGAGTCAGGCCAATGCTGGAGGCCTAATGGAAGGGGAGTTCAGTCATTGAATAATGATTTATGGCCATCTAGAAATAGTGTCTCTCAAGACAGAAACTTTGCTGGTCATGTTTCACAGTCCTATCATACTTGGGGCCGTGGCAGAGGGCAACACAATTCGTGGCAGCACACCTATCCATTTGCTGGTACAGGTAGAGGCCAGCAAGACCCTTGGGCACACAGCCGGCCTCCTTTTGCTGCTAATTGTTCATCACATGCCGGTGGAAGAGGGAACTTTGTTCAACGTAATCATGTAGAAAGTCAGAGTGGGCAACGGTGGGCAGGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

982

Amino Acids

112.88

Weight (kDa)

6.33

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 255	7.6e-101	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	314 - 752	7.2e-150	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AarI	CACCTGC	1 cut(s)	2301
AatII	GACGTC	1 cut(s)	1243
Acc36I	ACCTGC	1 cut(s)	2301
Acc65I	GGTACC	1 cut(s)	2561
AccB1I	GGYRCC	1 cut(s)	2561
AccB7I	CCANNNNNTGG	2 cut(s)	2008, 2801
AccI	GTMKAC	1 cut(s)	1065
AccII	CGCG	2 cut(s)	348, 992
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	5 cut(s)	71, 679, 704, 992, 2308
AclWI	GGATC	5 cut(s)	87, 662, 714, 917, 2526
AcoI	YGGCCR	1 cut(s)	2681
AcsI	RAATTY	9 cut(s)	763, 1029, 1076, 1163, 1288, 1379, 1502, 2392, 2428
AcuI	CTGAAG	4 cut(s)	414, 480, 2169, 2584
AcyI	GRCGYC	1 cut(s)	1240
AfaI	GTAC	9 cut(s)	41, 506, 1139, 1458, 2170, 2226, 2336, 2563, 2806
AfeI	AGCGCT	1 cut(s)	1753
AfiI	CCNNNNNNNGG	8 cut(s)	49, 493, 611, 1614, 1675, 2008, 2310, 2801
AhdI	GACNNNNNGTC	1 cut(s)	2047
AjnI	CCWGG	4 cut(s)	350, 487, 604, 2513
AloI	GAACNNNNNNTCC	2 cut(s)	2640, 2672
Alw26I	GTCTC	3 cut(s)	1910, 2478, 2704
AlwI	GGATC	5 cut(s)	87, 662, 714, 917, 2526
AlwNI	CAGNNNCTG	1 cut(s)	871
Aor13HI	TCCGGA	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	1753
AoxI	GGCC	9 cut(s)	1398, 1603, 1666, 2626, 2639, 2681, 2752, 2815, 2843
ApeKI	GCWGC	4 cut(s)	784, 2101, 2782, 2855
ApoI	RAATTY	9 cut(s)	763, 1029, 1076, 1163, 1288, 1379, 1502, 2392, 2428
ArsI	GACNNNNNNTTYG	2 cut(s)	2699, 2731
Asp700I	GAANNNNTTC	3 cut(s)	1076, 1199, 2271
Asp718I	GGTACC	1 cut(s)	2561
AspLEI	GCGC	4 cut(s)	348, 350, 844, 1754
AspS9I	GGNCC	4 cut(s)	1604, 1643, 1666, 2752
AsuC2I	CCSGG	1 cut(s)	1520
AsuHPI	GGTGA	6 cut(s)	67, 475, 635, 734, 1448, 2051
AsuII	TTCGAA	2 cut(s)	249, 1833
AvaII	GGWCC	1 cut(s)	1643
AxyI	CCTNAGG	1 cut(s)	1767
BaeGI	GKGCMC	1 cut(s)	2836
BalI	TGGCCA	1 cut(s)	2683
BanI	GGYRCC	1 cut(s)	2561
BarI	GAAGNNNNNNTAC	4 cut(s)	1121, 1153, 2382, 2414
BauI	CACGAG	1 cut(s)	2255
BbsI	GAAGAC	3 cut(s)	226, 1278, 2160
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	4 cut(s)	796, 2113, 2794, 2842
BceAI	ACGGC	1 cut(s)	2739
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 2189, 2223
BciT130I	CCWGG	4 cut(s)	352, 489, 606, 2515
BclI	TGATCA	1 cut(s)	1978
BcnI	CCSGG	1 cut(s)	1520
BcoDI	GTCTC	3 cut(s)	1910, 2478, 2704
BfaI	CTAG	7 cut(s)	89, 140, 446, 1152, 1670, 2541, 2688
BfmI	CTRYAG	3 cut(s)	1323, 1470, 1716
BfoI	RGCGCY	1 cut(s)	1755
BfuAI	ACCTGC	1 cut(s)	2301
BisI	GCNGC	4 cut(s)	785, 2102, 2783, 2856
BlsI	GCNGC	4 cut(s)	786, 2103, 2784, 2857
Bme1390I	CCNGG	5 cut(s)	352, 489, 606, 1520, 2515
Bme18I	GGWCC	1 cut(s)	1643
BmeRI	GACNNNNNGTC	1 cut(s)	2047
BmgT120I	GGNCC	4 cut(s)	1604, 1643, 1666, 2752
BmiI	GGNNCC	4 cut(s)	1606, 1702, 2563, 2753
BmrFI	CCNGG	5 cut(s)	352, 489, 606, 1520, 2515
BmsI	GCATC	6 cut(s)	82, 583, 691, 1270, 2021, 2107
BpiI	GAAGAC	3 cut(s)	226, 1278, 2160
BpmI	CTGGAG	3 cut(s)	586, 920, 2656
Bpu10I	CCTNAGC	2 cut(s)	387, 1674
Bpu14I	TTCGAA	2 cut(s)	249, 1833
BpuEI	CTTGAG	2 cut(s)	971, 2688
BpuMI	CCSGG	1 cut(s)	1520
BsaAI	YACGTR	1 cut(s)	1863
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	1240
BsaI	GGTCTC	2 cut(s)	1910, 2478
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	2475, 2505
Bsc4I	CCNNNNNNNGG	8 cut(s)	49, 493, 611, 1614, 1675, 2008, 2310, 2801
Bse118I	RCCGGY	2 cut(s)	2841, 2876
Bse21I	CCTNAGG	1 cut(s)	1767
Bse3DI	GCAATG	2 cut(s)	375, 682
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	4 cut(s)	352, 489, 606, 2515
BseGI	GGATG	7 cut(s)	160, 172, 706, 1852, 2230, 2324, 2449
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	8 cut(s)	49, 493, 611, 1614, 1675, 2008, 2310, 2801
BseMI	GCAATG	2 cut(s)	375, 682
BseMII	CTCAG	6 cut(s)	378, 921, 1249, 1688, 1959, 2580
BsePI	GCGCGC	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	1538
BseSI	GKGCMC	1 cut(s)	2836
BseXI	GCAGC	4 cut(s)	796, 2113, 2794, 2842
Bsh1236I	CGCG	2 cut(s)	348, 992
BshFI	GGCC	9 cut(s)	1400, 1605, 1668, 2628, 2641, 2683, 2754, 2817, 2845
BshNI	GGYRCC	1 cut(s)	2561
BsiSI	CCGG	6 cut(s)	176, 1520, 1602, 2098, 2842, 2877
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	8 cut(s)	49, 493, 611, 1614, 1675, 2008, 2310, 2801
BsmAI	GTCTC	3 cut(s)	1910, 2478, 2704
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	1969
BsnI	GGCC	9 cut(s)	1400, 1605, 1668, 2628, 2641, 2683, 2754, 2817, 2845
Bso31I	GGTCTC	2 cut(s)	1910, 2478
Bsp119I	TTCGAA	2 cut(s)	249, 1833
Bsp1286I	GDGCHC	1 cut(s)	2836
Bsp13I	TCCGGA	1 cut(s)	175
Bsp1407I	TGTACA	2 cut(s)	504, 2224
BspACI	CCGC	5 cut(s)	71, 679, 704, 992, 2308
BspANI	GGCC	9 cut(s)	1400, 1605, 1668, 2628, 2641, 2683, 2754, 2817, 2845
BspCNI	CTCAG	6 cut(s)	379, 922, 1248, 1687, 1960, 2579
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	2 cut(s)	348, 992
BspHI	TCATGA	2 cut(s)	1033, 1120
BspLI	GGNNCC	4 cut(s)	1606, 1702, 2563, 2753
BspMAI	CTGCAG	1 cut(s)	1327
BspMI	ACCTGC	1 cut(s)	2301
BspPI	GGATC	5 cut(s)	87, 662, 714, 917, 2526
BspQI	GCTCTTC	1 cut(s)	528
BspT104I	TTCGAA	2 cut(s)	249, 1833
BspT107I	GGYRCC	1 cut(s)	2561
BspTNI	GGTCTC	2 cut(s)	1910, 2478
BsrDI	GCAATG	2 cut(s)	375, 682
BsrFI	RCCGGY	2 cut(s)	2841, 2876
BsrGI	TGTACA	2 cut(s)	504, 2224
BssAI	RCCGGY	2 cut(s)	2841, 2876
BssHII	GCGCGC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	1240
BssSI	CACGAG	1 cut(s)	2255
BssT1I	CCWWGG	5 cut(s)	284, 516, 2121, 2556, 2828
Bst2BI	CACGAG	1 cut(s)	2255
Bst2UI	CCWGG	4 cut(s)	352, 489, 606, 2515
Bst4CI	ACNGT	8 cut(s)	655, 800, 1063, 2006, 2031, 2272, 2736, 2934
Bst6I	CTCTTC	6 cut(s)	393, 528, 1185, 1788, 1847, 2878
BstACI	GRCGYC	1 cut(s)	1240
BstAUI	TGTACA	2 cut(s)	504, 2224
BstBAI	YACGTR	1 cut(s)	1863
BstBI	TTCGAA	2 cut(s)	249, 1833
BstC8I	GCNNGC	6 cut(s)	97, 101, 348, 1402, 2819, 2843
BstDSI	CCRYGG	2 cut(s)	2002, 2755
BstENI	CCTNNNNNAGG	3 cut(s)	609, 1673, 2308
BstF5I	GGATG	7 cut(s)	160, 172, 706, 1852, 2230, 2324, 2449
BstFNI	CGCG	2 cut(s)	348, 992
BstH2I	RGCGCY	1 cut(s)	1755
BstHHI	GCGC	4 cut(s)	348, 350, 844, 1754
BstMAI	GTCTC	3 cut(s)	1910, 2478, 2704
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 326, 352, 910
BstNI	CCWGG	4 cut(s)	352, 489, 606, 2515
BstNSI	RCATGY	5 cut(s)	794, 878, 913, 1018, 2876
BstSCI	CCNGG	5 cut(s)	350, 487, 604, 1518, 2513
BstSFI	CTRYAG	3 cut(s)	1323, 1470, 1716
BstSLI	GKGCMC	1 cut(s)	2836
BstUI	CGCG	2 cut(s)	348, 992
BstV1I	GCAGC	4 cut(s)	796, 2113, 2794, 2842
BstV2I	GAAGAC	3 cut(s)	226, 1278, 2160
BstX2I	RGATCY	1 cut(s)	706
BstXI	CCANNNNNNTGG	2 cut(s)	1363, 1927
BstYI	RGATCY	1 cut(s)	706
Bsu36I	CCTNAGG	1 cut(s)	1767
BsuRI	GGCC	9 cut(s)	1400, 1605, 1668, 2628, 2641, 2683, 2754, 2817, 2845
BtgI	CCRYGG	2 cut(s)	2002, 2755
BtsCI	GGATG	7 cut(s)	160, 172, 706, 1852, 2230, 2324, 2449
BtsIMutI	CAGTG	5 cut(s)	925, 1341, 1446, 2027, 2092
BveI	ACCTGC	1 cut(s)	2301
Cac8I	GCNNGC	6 cut(s)	97, 101, 348, 1402, 2819, 2843
CaiI	CAGNNNCTG	1 cut(s)	871
CciI	TCATGA	2 cut(s)	1033, 1120
CfoI	GCGC	4 cut(s)	348, 350, 844, 1754
Cfr10I	RCCGGY	2 cut(s)	2841, 2876
Cfr13I	GGNCC	4 cut(s)	1604, 1643, 1666, 2752
Csp6I	GTAC	9 cut(s)	40, 505, 1138, 1457, 2169, 2225, 2335, 2562, 2805
CspCI	CAANNNNNGTGG	2 cut(s)	1792, 1827
CviQI	GTAC	9 cut(s)	40, 505, 1138, 1457, 2169, 2225, 2335, 2562, 2805
DraI	TTTAAA	1 cut(s)	1711
DriI	GACNNNNNGTC	1 cut(s)	2047
EaeI	YGGCCR	1 cut(s)	2681
Eam1104I	CTCTTC	6 cut(s)	393, 528, 1185, 1788, 1847, 2878
Eam1105I	GACNNNNNGTC	1 cut(s)	2047
EarI	CTCTTC	6 cut(s)	393, 528, 1185, 1788, 1847, 2878
Eco130I	CCWWGG	5 cut(s)	284, 516, 2121, 2556, 2828
Eco147I	AGGCCT	1 cut(s)	2641
Eco31I	GGTCTC	2 cut(s)	1910, 2478
Eco47I	GGWCC	1 cut(s)	1643
Eco47III	AGCGCT	1 cut(s)	1753
Eco57I	CTGAAG	4 cut(s)	414, 480, 2169, 2584
Eco81I	CCTNAGG	1 cut(s)	1767
EcoNI	CCTNNNNNAGG	3 cut(s)	609, 1673, 2308
EcoO109I	RGGNCCY	1 cut(s)	1666
EcoRI	GAATTC	2 cut(s)	1076, 1379
EcoRII	CCWGG	4 cut(s)	350, 487, 604, 2513
EcoT14I	CCWWGG	5 cut(s)	284, 516, 2121, 2556, 2828
ErhI	CCWWGG	5 cut(s)	284, 516, 2121, 2556, 2828
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	1 cut(s)	584
FauI	CCCGC	4 cut(s)	64, 686, 985, 2315
FauNDI	CATATG	1 cut(s)	2202
FbaI	TGATCA	1 cut(s)	1978
FblI	GTMKAC	1 cut(s)	1065
Fnu4HI	GCNGC	4 cut(s)	785, 2102, 2783, 2856
FokI	GGATG	7 cut(s)	147, 159, 713, 1859, 2217, 2311, 2456
Fsp4HI	GCNGC	4 cut(s)	785, 2102, 2783, 2856
FspBI	CTAG	7 cut(s)	89, 140, 446, 1152, 1670, 2541, 2688
GlaI	GCGC	4 cut(s)	347, 349, 843, 1753
GluI	GCNGC	4 cut(s)	785, 2102, 2783, 2856
GsuI	CTGGAG	3 cut(s)	586, 920, 2656
HaeII	RGCGCY	1 cut(s)	1755
HaeIII	GGCC	9 cut(s)	1400, 1605, 1668, 2628, 2641, 2683, 2754, 2817, 2845
HapII	CCGG	6 cut(s)	176, 1520, 1602, 2098, 2842, 2877
HhaI	GCGC	4 cut(s)	348, 350, 844, 1754
Hin1I	GRCGYC	1 cut(s)	1240
Hin6I	GCGC	4 cut(s)	346, 348, 842, 1752
HinP1I	GCGC	4 cut(s)	346, 348, 842, 1752
HindIII	AAGCTT	1 cut(s)	97
HpaII	CCGG	6 cut(s)	176, 1520, 1602, 2098, 2842, 2877
HphI	GGTGA	6 cut(s)	67, 475, 635, 734, 1448, 2051
Hpy166II	GTNNAC	6 cut(s)	34, 742, 1066, 1232, 2213, 2225
Hpy8I	GTNNAC	6 cut(s)	34, 742, 1066, 1232, 2213, 2225
HpyCH4III	ACNGT	8 cut(s)	655, 800, 1063, 2006, 2031, 2272, 2736, 2934
HpyCH4IV	ACGT	6 cut(s)	544, 640, 1228, 1240, 1862, 2902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 326, 352, 910
HpySE526I	ACGT	6 cut(s)	544, 640, 1228, 1240, 1862, 2902
Hsp92I	GRCGYC	1 cut(s)	1240
HspAI	GCGC	4 cut(s)	346, 348, 842, 1752
Kpn2I	TCCGGA	1 cut(s)	175
KpnI	GGTACC	1 cut(s)	2565
KroI	GCCGGC	1 cut(s)	2841
KroNI	GCCGGC	1 cut(s)	2843
Ksp22I	TGATCA	1 cut(s)	1978
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	5 cut(s)	325, 901, 1181, 2503, 2943
Lsp1109I	GCAGC	4 cut(s)	796, 2113, 2794, 2842
LweI	GCATC	6 cut(s)	82, 583, 691, 1270, 2021, 2107
MaeI	CTAG	7 cut(s)	89, 140, 446, 1152, 1670, 2541, 2688
MaeII	ACGT	6 cut(s)	544, 640, 1228, 1240, 1862, 2902
MaeIII	GTNAC	3 cut(s)	641, 2039, 2299
MfeI	CAATTG	3 cut(s)	803, 1044, 1311
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	1 cut(s)	2836
MlsI	TGGCCA	1 cut(s)	2683
MluNI	TGGCCA	1 cut(s)	2683
MlyI	GAGTC	3 cut(s)	464, 2150, 2630
Mox20I	TGGCCA	1 cut(s)	2683
MroI	TCCGGA	1 cut(s)	175
MroNI	GCCGGC	1 cut(s)	2841
MroXI	GAANNNNTTC	3 cut(s)	1076, 1199, 2271
MscI	TGGCCA	1 cut(s)	2683
MseI	TTAA	7 cut(s)	360, 548, 939, 1299, 1554, 1710, 2609
MslI	CAYNNNNRTG	2 cut(s)	1038, 2877
Msp20I	TGGCCA	1 cut(s)	2683
MspI	CCGG	6 cut(s)	176, 1520, 1602, 2098, 2842, 2877
MspR9I	CCNGG	5 cut(s)	352, 489, 606, 1520, 2515
MunI	CAATTG	3 cut(s)	803, 1044, 1311
Mva1269I	GAATGC	1 cut(s)	1969
MvaI	CCWGG	4 cut(s)	352, 489, 606, 2515
MvnI	CGCG	2 cut(s)	348, 992
MwoI	GCNNNNNNNGC	4 cut(s)	68, 326, 352, 910
NaeI	GCCGGC	1 cut(s)	2843
NciI	CCSGG	1 cut(s)	1520
NdeI	CATATG	1 cut(s)	2202
NgoMIV	GCCGGC	1 cut(s)	2841
NlaIV	GGNNCC	4 cut(s)	1606, 1702, 2563, 2753
NmuCI	GTSAC	3 cut(s)	641, 2039, 2299
NspI	RCATGY	5 cut(s)	794, 878, 913, 1018, 2876
NspV	TTCGAA	2 cut(s)	249, 1833
PagI	TCATGA	2 cut(s)	1033, 1120
PaqCI	CACCTGC	1 cut(s)	2301
PauI	GCGCGC	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	2641
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	1 cut(s)	1969
PdiI	GCCGGC	1 cut(s)	2843
PdmI	GAANNNNTTC	3 cut(s)	1076, 1199, 2271
PfeI	GAWTC	9 cut(s)	337, 379, 470, 557, 1111, 1319, 1476, 1898, 2082
PflFI	GACNNNGTC	1 cut(s)	2159
PflMI	CCANNNNNTGG	2 cut(s)	2008, 2801
PkrI	GCNGC	4 cut(s)	786, 2103, 2784, 2857
PleI	GAGTC	3 cut(s)	463, 2150, 2629
PpsI	GAGTC	3 cut(s)	463, 2150, 2629
Ppu21I	YACGTR	1 cut(s)	1863
PsiI	TTATAA	1 cut(s)	713
Psp6I	CCWGG	4 cut(s)	350, 487, 604, 2513
PspGI	CCWGG	4 cut(s)	350, 487, 604, 2513
PspN4I	GGNNCC	4 cut(s)	1606, 1702, 2563, 2753
PspPI	GGNCC	4 cut(s)	1604, 1643, 1666, 2752
PstI	CTGCAG	1 cut(s)	1327
PstNI	CAGNNNCTG	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	706
PsyI	GACNNNGTC	1 cut(s)	2159
PteI	GCGCGC	1 cut(s)	346
RsaI	GTAC	9 cut(s)	41, 506, 1139, 1458, 2170, 2226, 2336, 2563, 2806
RsaNI	GTAC	9 cut(s)	40, 505, 1138, 1457, 2169, 2225, 2335, 2562, 2805
RseI	CAYNNNNRTG	2 cut(s)	1038, 2877
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	7 cut(s)	360, 548, 939, 1299, 1554, 1710, 2609
SatI	GCNGC	4 cut(s)	785, 2102, 2783, 2856
Sau96I	GGNCC	4 cut(s)	1604, 1643, 1666, 2752
SchI	GAGTC	3 cut(s)	464, 2150, 2630
ScrFI	CCNGG	5 cut(s)	352, 489, 606, 1520, 2515
SduI	GDGCHC	1 cut(s)	2836
SfaNI	GCATC	6 cut(s)	82, 583, 691, 1270, 2021, 2107
SfcI	CTRYAG	3 cut(s)	1323, 1470, 1716
SfuI	TTCGAA	2 cut(s)	249, 1833
SinI	GGWCC	1 cut(s)	1643
SmiMI	CAYNNNNRTG	2 cut(s)	1038, 2877
SmlI	CTYRAG	2 cut(s)	950, 2703
SmoI	CTYRAG	2 cut(s)	950, 2703
SseBI	AGGCCT	1 cut(s)	2641
SsiI	CCGC	5 cut(s)	71, 679, 704, 992, 2308
SspI	AATATT	4 cut(s)	244, 274, 1087, 1200
SspMI	CTAG	7 cut(s)	89, 140, 446, 1152, 1670, 2541, 2688
StuI	AGGCCT	1 cut(s)	2641
StyD4I	CCNGG	5 cut(s)	350, 487, 604, 1518, 2513
StyI	CCWWGG	5 cut(s)	284, 516, 2121, 2556, 2828
TaaI	ACNGT	8 cut(s)	655, 800, 1063, 2006, 2031, 2272, 2736, 2934
TaiI	ACGT	6 cut(s)	547, 643, 1231, 1243, 1865, 2905
TaqI	TCGA	5 cut(s)	126, 249, 1305, 1833, 2051
TaqII	GACCGA	1 cut(s)	2502
TatI	WGTACW	3 cut(s)	504, 2224, 2334
TfiI	GAWTC	9 cut(s)	337, 379, 470, 557, 1111, 1319, 1476, 1898, 2082
Tru1I	TTAA	7 cut(s)	360, 548, 939, 1299, 1554, 1710, 2609
Tru9I	TTAA	7 cut(s)	360, 548, 939, 1299, 1554, 1710, 2609
TscAI	CASTG	5 cut(s)	925, 1341, 1453, 2034, 2092
TseFI	GTSAC	3 cut(s)	641, 2039, 2299
TseI	GCWGC	4 cut(s)	784, 2101, 2782, 2855
Tsp45I	GTSAC	3 cut(s)	641, 2039, 2299
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	5 cut(s)	925, 1341, 1453, 2034, 2092
Tth111I	GACNNNGTC	1 cut(s)	2159
Van91I	CCANNNNNTGG	2 cut(s)	2008, 2801
VpaK11BI	GGWCC	1 cut(s)	1643
XagI	CCTNNNNNAGG	3 cut(s)	609, 1673, 2308
XapI	RAATTY	9 cut(s)	763, 1029, 1076, 1163, 1288, 1379, 1502, 2392, 2428
XbaI	TCTAGA	4 cut(s)	88, 139, 1151, 2687
XceI	RCATGY	5 cut(s)	794, 878, 913, 1018, 2876
XcmI	CCANNNNNNNNNTGG	2 cut(s)	689, 1617
XmiI	GTMKAC	1 cut(s)	1065
XmnI	GAANNNNTTC	3 cut(s)	1076, 1199, 2271
XspI	CTAG	7 cut(s)	89, 140, 446, 1152, 1670, 2541, 2688
ZraI	GACGTC	1 cut(s)	1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.