Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00794

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

32169 .. 37047

Gene Structure 4879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGTTATCTTTGGCAACACATGAAGTTCACTTTTCCATACTAAGAGAGGAGCAACCTGCAAACAGTCAATTGACAATCTCATCTGCAATATCAGACAAAAGAACAGCGTACATGATGAAAAAGCGATATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAATGATCCTCCTGAGAATTTTAAGTTTGATCTTGAGCGTATAATTGATGATTTCATCTTTATATGTTTCTTCGCGGGAAATGATTTTTTACCCCACATGCCGACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCAGGTTCATGACAAGAAGTTGGGGTACATCAAACTATCTAGAGTTGAGAAATTTGTTCTCCTTATTGGAGCATTTGAAGAGAAAATATTCAAGAAAAGATCAAATATACGAGAGCGTAAACTCAGACGTCTTTGCTATAACAATGATTCGATAGAGGAAGACATTGATGTTGGAAGTTCAAAATTTAATTTTGAGGCAATTGAAGGATCTGCAGTTGTTTCAGCTGATAACGTTTCATCTTCCGAAATAGTGGAAAACACGAAGGAATTCAAGCAAAAATTGAAGGCCAGCATTAGAAAAACATCTGATCTGTTTAGGAATGGTAAAATCACCACTGACAAAGTACGATTGGGTGCTACAGGATTCAAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCCGGGGGAGATTGAAAGCAAAAGGAAGGAAGTAGTCAAAAGCTACACAGAAGGACTGCTCTGGGTTCTTTTATACTACTTTTCCGGTCCCCCATCGTGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAGCCCAGGTCAAACCACAATTTCAGAAAGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGCGCTCATGCACTTCCTAAGGATTATCGGACACTTATGACGGAAGAGTGTTCCACAATCATTGATTTTTACCCTTCTGACTTCGAAATTGACATGGATGGGAAGAGATTTACGTGGCAGGGTATCTGCAAACTTCCCTTTGTGGAAGAATCCCGACTTCTACAGGAGACCAGAAAATTGGAAAAGGAACTAATGGCAGAAGAAATTGACAGGAATGCTGAGAAACTTGATCAGTTATTCATGCGATGCACCCACGGTATGGCATCACAAATTGTTTCACTGTCTAATGGTGACAATCAGTCAATCAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCTTCAGCTTGATGACAATGATGCCAATGTCAAAGAAAGCGATGATAGCTCTGAAGAAGACTCTGTCTTATGTGCCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCGTTTACTTGATGGTGTACAACATCCTACCAAGACAATCAATGAACAAGAGCTTATGGAAACGATTCTATGGCATGAATGCCAGGGAAATGTGCCCACCCTCAGCATCCAGCAAGTTCAGGAAAGGTTTAGAAAACCGAATGATTTGGGAAATGCAAGTTTTCACAATGGTAAATTCACGTCAAGCTATCCTGCCAATTCAGTTCACAAATTTGCTGGTTCTGGATGGGGCTGTGGTAGAGGAGCAAATGGTAGTTCTAATTCAGGGGACCGAGTTTATGCTCCAAAAGGAATATCCAGTGGTCAAAGAGTAGTGTCATCTCCTAGATCATATTATTCCAAGGGTACCTCAGATTACAGAAAAGGCACATTACAACACGGCTTCAGGGAATTAAATATATCAGAGTCAGGCCAATGCTGGAGGCCTAATGGAAGGGGAGTTCAGTCATTGAATAATGATTTATGGCCATCTAGAAATAGTATCTCTCAAGACAGAAACTTTGCTGGTCATGGTTCACAGTCCTATCATACTTGGGGCCGTGGCCGAGGGCAACACAATTCGTGGCAGCACTCCTATCCATTTGCTGGTACAGGTAGAGGCCAGCAAGACCCTTGGACACACACCCGGCCTCATTTTGCTGCTAACCGTTTATCATCACATGCCGGTGGAAGAGGAAACCTTGTTCAACGTGGTCATGTAGAAAGTCAGAATGGGCAGTGGTGGATAGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

735

Amino Acids

83.82

Weight (kDa)

7.92

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_M	PF17846	69 - 508	4.1e-150	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	64
Acc65I	GGTACC	1 cut(s)	1817
AccB1I	GGYRCC	1 cut(s)	1817
AccB7I	CCANNNNNTGG	2 cut(s)	1273, 2057
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	257
AciI	CCGC	1 cut(s)	257
AclI	AACGTT	1 cut(s)	609
AclWI	GGATC	2 cut(s)	182, 592
AcoI	YGGCCR	2 cut(s)	1937, 2014
AcsI	RAATTY	9 cut(s)	199, 294, 341, 428, 560, 644, 767, 1646, 1682
AcuI	CTGAAG	3 cut(s)	1349, 1434, 1840
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	6 cut(s)	110, 404, 723, 1491, 1819, 2062
AfeI	AGCGCT	1 cut(s)	1018
AfiI	CCNNNNNNNGG	4 cut(s)	879, 940, 1273, 2057
AhdI	GACNNNNNGTC	1 cut(s)	1312
AjiI	CACGTC	1 cut(s)	1653
AjnI	CCWGG	2 cut(s)	939, 1554
AloI	GAACNNNNNNTCC	4 cut(s)	1896, 1928, 2139, 2171
Alw26I	GTCTC	1 cut(s)	1175
AlwI	GGATC	2 cut(s)	182, 592
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	784
Aor51HI	AGCGCT	1 cut(s)	1018
AoxI	GGCC	9 cut(s)	663, 931, 1882, 1895, 1937, 2008, 2014, 2071, 2099
ApeKI	GCWGC	2 cut(s)	2038, 2111
ApoI	RAATTY	9 cut(s)	199, 294, 341, 428, 560, 644, 767, 1646, 1682
ArsI	GACNNNNNNTTYG	2 cut(s)	1955, 1987
Asp700I	GAANNNNTTC	4 cut(s)	341, 464, 644, 1536
Asp718I	GGTACC	1 cut(s)	1817
AspLEI	GCGC	1 cut(s)	1019
AspS9I	GGNCC	5 cut(s)	869, 908, 931, 1741, 2008
AsuC2I	CCSGG	3 cut(s)	785, 786, 2098
AsuHPI	GGTGA	2 cut(s)	700, 1316
AsuII	TTCGAA	1 cut(s)	1098
AvaI	CYCGRG	1 cut(s)	784
AvaII	GGWCC	3 cut(s)	869, 908, 1741
AxyI	CCTNAGG	1 cut(s)	1032
BaeGI	GKGCMC	2 cut(s)	1438, 1569
BalI	TGGCCA	1 cut(s)	1939
BanI	GGYRCC	1 cut(s)	1817
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BbsI	GAAGAC	2 cut(s)	543, 1425
BbvCI	CCTCAGC	1 cut(s)	1574
BbvI	GCAGC	2 cut(s)	2050, 2098
BccI	CCATC	5 cut(s)	883, 1106, 1478, 1692, 1948
BceAI	ACGGC	2 cut(s)	1867, 1995
BcgI	CGANNNNNNTGC	2 cut(s)	1454, 1488
BciT130I	CCWGG	2 cut(s)	941, 1556
BclI	TGATCA	1 cut(s)	1243
BcnI	CCSGG	3 cut(s)	785, 786, 2098
BcoDI	GTCTC	1 cut(s)	1175
BfaI	CTAG	4 cut(s)	417, 935, 1797, 1944
BfmI	CTRYAG	4 cut(s)	588, 735, 981, 1175
BfoI	RGCGCY	1 cut(s)	1020
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	2039, 2112
BlsI	GCNGC	2 cut(s)	2040, 2113
Bme1390I	CCNGG	5 cut(s)	785, 786, 941, 1556, 2098
Bme18I	GGWCC	3 cut(s)	869, 908, 1741
BmeRI	GACNNNNNGTC	1 cut(s)	1312
BmeT110I	CYCGRG	1 cut(s)	784
BmgBI	CACGTC	1 cut(s)	1653
BmgT120I	GGNCC	5 cut(s)	869, 908, 931, 1741, 2008
BmiI	GGNNCC	5 cut(s)	871, 967, 1742, 1819, 2009
BmrFI	CCNGG	5 cut(s)	785, 786, 941, 1556, 2098
BmsI	GCATC	4 cut(s)	1250, 1286, 1372, 1587
BpiI	GAAGAC	2 cut(s)	543, 1425
BpmI	CTGGAG	2 cut(s)	185, 1912
Bpu10I	CCTNAGC	1 cut(s)	1574
Bpu14I	TTCGAA	1 cut(s)	1098
BpuEI	CTTGAG	2 cut(s)	236, 1944
BpuMI	CCSGG	3 cut(s)	785, 786, 2098
BsaAI	YACGTR	1 cut(s)	1128
BsaHI	GRCGYC	1 cut(s)	505
BsaI	GGTCTC	1 cut(s)	1175
BsaJI	CCNNGG	9 cut(s)	784, 785, 939, 1267, 1555, 1812, 2011, 2017, 2084
BsaWI	WCCGGW	1 cut(s)	866
Bsc4I	CCNNNNNNNGG	4 cut(s)	879, 940, 1273, 2057
Bse118I	RCCGGY	1 cut(s)	2135
Bse1I	ACTGG	1 cut(s)	1770
Bse21I	CCTNAGG	1 cut(s)	1032
BseBI	CCWGG	2 cut(s)	941, 1556
BseDI	CCNNGG	9 cut(s)	784, 785, 939, 1267, 1555, 1812, 2011, 2017, 2084
BseGI	GGATG	4 cut(s)	1117, 1495, 1578, 1703
BseLI	CCNNNNNNNGG	4 cut(s)	879, 940, 1273, 2057
BseMII	CTCAG	5 cut(s)	186, 514, 1224, 1588, 1836
BseNI	ACTGG	1 cut(s)	1770
BseRI	GAGGAG	2 cut(s)	62, 1728
BseSI	GKGCMC	2 cut(s)	1438, 1569
BseXI	GCAGC	2 cut(s)	2050, 2098
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	9 cut(s)	665, 933, 1884, 1897, 1939, 2010, 2016, 2073, 2101
BshNI	GGYRCC	1 cut(s)	1817
BsiHKCI	CYCGRG	1 cut(s)	784
BsiSI	CCGG	4 cut(s)	785, 867, 2098, 2136
BslFI	GGGAC	2 cut(s)	855, 1754
BslI	CCNNNNNNNGG	4 cut(s)	879, 940, 1273, 2057
BsmAI	GTCTC	1 cut(s)	1175
BsmFI	GGGAC	2 cut(s)	855, 1754
BsmI	GAATGC	2 cut(s)	1234, 1556
BsnI	GGCC	9 cut(s)	665, 933, 1884, 1897, 1939, 2010, 2016, 2073, 2101
Bso31I	GGTCTC	1 cut(s)	1175
BsoBI	CYCGRG	1 cut(s)	784
Bsp119I	TTCGAA	1 cut(s)	1098
Bsp1286I	GDGCHC	2 cut(s)	1438, 1569
Bsp1407I	TGTACA	1 cut(s)	1489
Bsp143I	GATC	7 cut(s)	187, 211, 476, 584, 685, 1243, 1799
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	9 cut(s)	665, 933, 1884, 1897, 1939, 2010, 2016, 2073, 2101
BspCNI	CTCAG	5 cut(s)	187, 513, 1225, 1587, 1835
BspFNI	CGCG	1 cut(s)	257
BspHI	TCATGA	2 cut(s)	298, 385
BspLI	GGNNCC	5 cut(s)	871, 967, 1742, 1819, 2009
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	182, 592
BspT104I	TTCGAA	1 cut(s)	1098
BspT107I	GGYRCC	1 cut(s)	1817
BspTNI	GGTCTC	1 cut(s)	1175
BsrFI	RCCGGY	1 cut(s)	2135
BsrGI	TGTACA	1 cut(s)	1489
BsrI	ACTGG	1 cut(s)	1770
BssAI	RCCGGY	1 cut(s)	2135
BssECI	CCNNGG	9 cut(s)	784, 785, 939, 1267, 1555, 1812, 2011, 2017, 2084
BssMI	GATC	7 cut(s)	187, 211, 476, 584, 685, 1243, 1799
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	2 cut(s)	1812, 2084
Bst2UI	CCWGG	2 cut(s)	941, 1556
Bst4CI	ACNGT	6 cut(s)	65, 328, 1271, 1296, 1992, 2120
Bst6I	CTCTTC	4 cut(s)	450, 1053, 1112, 2137
BstACI	GRCGYC	1 cut(s)	505
BstAUI	TGTACA	1 cut(s)	1489
BstBAI	YACGTR	1 cut(s)	1128
BstBI	TTCGAA	1 cut(s)	1098
BstC8I	GCNNGC	2 cut(s)	667, 2075
BstDEI	CTNAG	7 cut(s)	41, 195, 500, 1032, 1233, 1574, 1822
BstDSI	CCRYGG	2 cut(s)	1267, 2011
BstENI	CCTNNNNNAGG	1 cut(s)	938
BstF5I	GGATG	4 cut(s)	1117, 1495, 1578, 1703
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	1020
BstHHI	GCGC	1 cut(s)	1019
BstKTI	GATC	7 cut(s)	190, 214, 479, 587, 688, 1246, 1802
BstMAI	GTCTC	1 cut(s)	1175
BstMBI	GATC	7 cut(s)	187, 211, 476, 584, 685, 1243, 1799
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 1407
BstNI	CCWGG	2 cut(s)	941, 1556
BstNSI	RCATGY	4 cut(s)	143, 178, 283, 2135
BstSCI	CCNGG	5 cut(s)	783, 784, 939, 1554, 2096
BstSFI	CTRYAG	4 cut(s)	588, 735, 981, 1175
BstSLI	GKGCMC	2 cut(s)	1438, 1569
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	2050, 2098
BstV2I	GAAGAC	2 cut(s)	543, 1425
BstX2I	RGATCY	1 cut(s)	584
BstXI	CCANNNNNNTGG	1 cut(s)	1192
BstYI	RGATCY	1 cut(s)	584
Bsu36I	CCTNAGG	1 cut(s)	1032
BsuRI	GGCC	9 cut(s)	665, 933, 1884, 1897, 1939, 2010, 2016, 2073, 2101
BtgI	CCRYGG	2 cut(s)	1267, 2011
BtgZI	GCGATG	2 cut(s)	1273, 1416
BtrI	CACGTC	1 cut(s)	1653
BtsCI	GGATG	4 cut(s)	1117, 1495, 1578, 1703
BtsI	GCAGTG	1 cut(s)	2195
BtsIMutI	CAGTG	5 cut(s)	711, 1292, 1357, 1777, 2195
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	667, 2075
CaiI	CAGNNNCTG	1 cut(s)	136
CciI	TCATGA	2 cut(s)	298, 385
CfoI	GCGC	1 cut(s)	1019
Cfr10I	RCCGGY	1 cut(s)	2135
Cfr13I	GGNCC	5 cut(s)	869, 908, 931, 1741, 2008
Cfr9I	CCCGGG	1 cut(s)	784
Csp6I	GTAC	6 cut(s)	109, 403, 722, 1490, 1818, 2061
CspCI	CAANNNNNGTGG	2 cut(s)	1057, 1092
CviQI	GTAC	6 cut(s)	109, 403, 722, 1490, 1818, 2061
DdeI	CTNAG	7 cut(s)	41, 195, 500, 1032, 1233, 1574, 1822
DpnI	GATC	7 cut(s)	189, 213, 478, 586, 687, 1245, 1801
DpnII	GATC	7 cut(s)	187, 211, 476, 584, 685, 1243, 1799
DraI	TTTAAA	1 cut(s)	976
DriI	GACNNNNNGTC	1 cut(s)	1312
EaeI	YGGCCR	2 cut(s)	1937, 2014
Eam1104I	CTCTTC	4 cut(s)	450, 1053, 1112, 2137
Eam1105I	GACNNNNNGTC	1 cut(s)	1312
EarI	CTCTTC	4 cut(s)	450, 1053, 1112, 2137
Eco130I	CCWWGG	2 cut(s)	1812, 2084
Eco147I	AGGCCT	1 cut(s)	1897
Eco31I	GGTCTC	1 cut(s)	1175
Eco32I	GATATC	1 cut(s)	128
Eco47I	GGWCC	3 cut(s)	869, 908, 1741
Eco47III	AGCGCT	1 cut(s)	1018
Eco57I	CTGAAG	3 cut(s)	1349, 1434, 1840
Eco81I	CCTNAGG	1 cut(s)	1032
Eco88I	CYCGRG	1 cut(s)	784
EcoNI	CCTNNNNNAGG	1 cut(s)	938
EcoO109I	RGGNCCY	1 cut(s)	931
EcoRI	GAATTC	2 cut(s)	341, 644
EcoRII	CCWGG	2 cut(s)	939, 1554
EcoRV	GATATC	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	1812, 2084
ErhI	CCWWGG	2 cut(s)	1812, 2084
FaqI	GGGAC	2 cut(s)	855, 1754
FauI	CCCGC	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	1467
FbaI	TGATCA	1 cut(s)	1243
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	2039, 2112
FokI	GGATG	4 cut(s)	1124, 1482, 1565, 1710
Fsp4HI	GCNGC	2 cut(s)	2039, 2112
FspBI	CTAG	4 cut(s)	417, 935, 1797, 1944
GlaI	GCGC	1 cut(s)	1018
GluI	GCNGC	2 cut(s)	2039, 2112
GsuI	CTGGAG	2 cut(s)	185, 1912
HaeII	RGCGCY	1 cut(s)	1020
HaeIII	GGCC	9 cut(s)	665, 933, 1884, 1897, 1939, 2010, 2016, 2073, 2101
HapII	CCGG	4 cut(s)	785, 867, 2098, 2136
HhaI	GCGC	1 cut(s)	1019
Hin1I	GRCGYC	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	1017
HinP1I	GCGC	1 cut(s)	1017
HinfI	GANTC	8 cut(s)	376, 524, 741, 1163, 1347, 1421, 1537, 1877
HpaII	CCGG	4 cut(s)	785, 867, 2098, 2136
HphI	GGTGA	2 cut(s)	700, 1316
Hpy166II	GTNNAC	7 cut(s)	28, 331, 497, 1478, 1490, 1678, 1988
Hpy8I	GTNNAC	7 cut(s)	28, 331, 497, 1478, 1490, 1678, 1988
HpyAV	CCTTC	9 cut(s)	575, 634, 655, 802, 827, 922, 1098, 1373, 1899
HpyCH4III	ACNGT	6 cut(s)	65, 328, 1271, 1296, 1992, 2120
HpyCH4IV	ACGT	5 cut(s)	505, 609, 1127, 1652, 2161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 1407
HpyF3I	CTNAG	7 cut(s)	41, 195, 500, 1032, 1233, 1574, 1822
HpySE526I	ACGT	5 cut(s)	505, 609, 1127, 1652, 2161
Hsp92I	GRCGYC	1 cut(s)	505
HspAI	GCGC	1 cut(s)	1017
KpnI	GGTACC	1 cut(s)	1821
Ksp22I	TGATCA	1 cut(s)	1243
Kzo9I	GATC	7 cut(s)	187, 211, 476, 584, 685, 1243, 1799
LmnI	GCTCC	5 cut(s)	49, 166, 446, 1715, 1759
Lsp1109I	GCAGC	2 cut(s)	2050, 2098
LweI	GCATC	4 cut(s)	1250, 1286, 1372, 1587
MaeI	CTAG	4 cut(s)	417, 935, 1797, 1944
MaeII	ACGT	5 cut(s)	505, 609, 1127, 1652, 2161
MaeIII	GTNAC	1 cut(s)	1304
MalI	GATC	7 cut(s)	189, 213, 478, 586, 687, 1245, 1801
MboI	GATC	7 cut(s)	187, 211, 476, 584, 685, 1243, 1799
MfeI	CAATTG	3 cut(s)	68, 309, 576
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	1438, 1569
MlsI	TGGCCA	1 cut(s)	1939
MluNI	TGGCCA	1 cut(s)	1939
MlyI	GAGTC	2 cut(s)	1415, 1886
MmeI	TCCRAC	1 cut(s)	529
Mox20I	TGGCCA	1 cut(s)	1939
MroXI	GAANNNNTTC	4 cut(s)	341, 464, 644, 1536
MscI	TGGCCA	1 cut(s)	1939
MseI	TTAA	4 cut(s)	204, 564, 975, 1865
MslI	CAYNNNNRTG	2 cut(s)	303, 2136
Msp20I	TGGCCA	1 cut(s)	1939
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	4 cut(s)	785, 867, 2098, 2136
MspR9I	CCNGG	5 cut(s)	785, 786, 941, 1556, 2098
MunI	CAATTG	3 cut(s)	68, 309, 576
Mva1269I	GAATGC	2 cut(s)	1234, 1556
MvaI	CCWGG	2 cut(s)	941, 1556
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	175, 1407
NciI	CCSGG	3 cut(s)	785, 786, 2098
NdeI	CATATG	1 cut(s)	1467
NdeII	GATC	7 cut(s)	187, 211, 476, 584, 685, 1243, 1799
NlaIV	GGNNCC	5 cut(s)	871, 967, 1742, 1819, 2009
NmeAIII	GCCGAG	1 cut(s)	2042
NmuCI	GTSAC	1 cut(s)	1304
NspI	RCATGY	4 cut(s)	143, 178, 283, 2135
NspV	TTCGAA	1 cut(s)	1098
PagI	TCATGA	2 cut(s)	298, 385
PceI	AGGCCT	1 cut(s)	1897
PctI	GAATGC	2 cut(s)	1234, 1556
PdmI	GAANNNNTTC	4 cut(s)	341, 464, 644, 1536
PfeI	GAWTC	6 cut(s)	376, 524, 741, 1163, 1347, 1537
PflFI	GACNNNGTC	1 cut(s)	1424
PflMI	CCANNNNNTGG	2 cut(s)	1273, 2057
PkrI	GCNGC	2 cut(s)	2040, 2113
PleI	GAGTC	2 cut(s)	1415, 1885
PpsI	GAGTC	2 cut(s)	1415, 1885
Ppu21I	YACGTR	1 cut(s)	1128
Psp1406I	AACGTT	1 cut(s)	609
Psp6I	CCWGG	2 cut(s)	939, 1554
PspGI	CCWGG	2 cut(s)	939, 1554
PspN4I	GGNNCC	5 cut(s)	871, 967, 1742, 1819, 2009
PspPI	GGNCC	5 cut(s)	869, 908, 931, 1741, 2008
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	584
PsyI	GACNNNGTC	1 cut(s)	1424
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	6 cut(s)	110, 404, 723, 1491, 1819, 2062
RsaNI	GTAC	6 cut(s)	109, 403, 722, 1490, 1818, 2061
RseI	CAYNNNNRTG	2 cut(s)	303, 2136
SaqAI	TTAA	4 cut(s)	204, 564, 975, 1865
SatI	GCNGC	2 cut(s)	2039, 2112
Sau3AI	GATC	7 cut(s)	187, 211, 476, 584, 685, 1243, 1799
Sau96I	GGNCC	5 cut(s)	869, 908, 931, 1741, 2008
SchI	GAGTC	2 cut(s)	1415, 1886
ScrFI	CCNGG	5 cut(s)	785, 786, 941, 1556, 2098
SduI	GDGCHC	2 cut(s)	1438, 1569
SfaNI	GCATC	4 cut(s)	1250, 1286, 1372, 1587
SfcI	CTRYAG	4 cut(s)	588, 735, 981, 1175
SfuI	TTCGAA	1 cut(s)	1098
SinI	GGWCC	3 cut(s)	869, 908, 1741
SmaI	CCCGGG	1 cut(s)	786
SmiMI	CAYNNNNRTG	2 cut(s)	303, 2136
SmlI	CTYRAG	2 cut(s)	215, 1959
SmoI	CTYRAG	2 cut(s)	215, 1959
SseBI	AGGCCT	1 cut(s)	1897
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	2 cut(s)	352, 465
SspMI	CTAG	4 cut(s)	417, 935, 1797, 1944
StuI	AGGCCT	1 cut(s)	1897
StyD4I	CCNGG	5 cut(s)	783, 784, 939, 1554, 2096
StyI	CCWWGG	2 cut(s)	1812, 2084
TaaI	ACNGT	6 cut(s)	65, 328, 1271, 1296, 1992, 2120
TaiI	ACGT	5 cut(s)	508, 612, 1130, 1655, 2164
TaqI	TCGA	2 cut(s)	527, 1098
TaqII	GACCGA	1 cut(s)	1758
TatI	WGTACW	1 cut(s)	1489
TfiI	GAWTC	6 cut(s)	376, 524, 741, 1163, 1347, 1537
Tru1I	TTAA	4 cut(s)	204, 564, 975, 1865
Tru9I	TTAA	4 cut(s)	204, 564, 975, 1865
TscAI	CASTG	5 cut(s)	718, 1299, 1357, 1777, 2195
TseFI	GTSAC	1 cut(s)	1304
TseI	GCWGC	2 cut(s)	2038, 2111
Tsp45I	GTSAC	1 cut(s)	1304
TspGWI	ACGGA	1 cut(s)	1070
TspMI	CCCGGG	1 cut(s)	784
TspRI	CASTG	5 cut(s)	718, 1299, 1357, 1777, 2195
Tth111I	GACNNNGTC	1 cut(s)	1424
Van91I	CCANNNNNTGG	2 cut(s)	1273, 2057
VpaK11BI	GGWCC	3 cut(s)	869, 908, 1741
XagI	CCTNNNNNAGG	1 cut(s)	938
XapI	RAATTY	9 cut(s)	199, 294, 341, 428, 560, 644, 767, 1646, 1682
XbaI	TCTAGA	2 cut(s)	416, 1943
XceI	RCATGY	4 cut(s)	143, 178, 283, 2135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	882
XmaI	CCCGGG	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	4 cut(s)	341, 464, 644, 1536
XspI	CTAG	4 cut(s)	417, 935, 1797, 1944
ZraI	GACGTC	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.