Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

44749310 .. 44914077

Gene Structure 164768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG335400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGGGGGTTTCATCGTTTTTTCGTTGGTTGGTAAACAAGTACCCTAAAGTGGTGGTGAAAGCCATTGAAGCGGGAGAGGATCAGTTTCTAGATGCAAGCTTGCCAAACCCAAATGGCATAGAGTTCGATAACCTGTTTCTAGACATGAATGGGATTATCCATCCCTGCTTTCATCCGGAAGAAGATGATGATGATGGTTATGGACTTGCACCGCCAAGAACTTATGAAGATGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATGGAGTTGCTCCGAGGGCTAAAATGAATCAACAGCGCGCCAGGCGTTTTAAGTCGGCAATGGACAAGAATCTTGCTGAGGCTGAAGAAGAGAAACTAAGACAGCAATTTGAAAAGGAAGGGAAAAAAATCCTACCAGAACAGGAATCCGAAGTTTCTGATTCTAATATAATCACCCCTGGAACGGATTTCATGTACAAGTTATCCAAGGCTCTTCGAAGCTACATCAATCTACGTTTAAGCCAAGATTCAGGCTGGAGGGACATCAAGGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGATGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGTATGGTCTGGATGCGGATCTTATAATGTTGTCTTTGGCAACACATGAAGTTCACCTTTCCATACTAAGAGAGGATTTACTAATCCAAAACCAGCAGCAACATGCAAACAGTCAATTGACAATCTCACCTGCAATATCAGACAAAAGAACAGCGTACATGATGAAAAAGCGTTATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAATGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGAATCATTGATGATTTCATCTTTATATGTTTCTTTGCGGGAAATGATTTTTTACCCCACATGCCAACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGTTATTTGGTTGATATGATTCTGACAATCAATGAACATGAGCTTATGGAAACAGTTTTATGGCATGAATGCCAGGGAAATGTGCCTGCCCGCAGCATCCATCAAGTTCAGGCAAGGTTTAGAAAACCAGGTGATTTGGGAAATGCAAGCTTTCACAATGGCAAATTCACTTCAAGCTCTCCTGCCAATTCAATTCACAAATTTGCTGGTTCTGGATGGGGCTGTGGTAGAGGAGCAAATGGTAGTTCTAATTCAGGAGACCGAGTTTATGCTCCAAAAGGAATATCCAGTGATCAAAGAGTAGTGTCATCTCCTAGCTCATACTATGCCAAGGGTACCTCAGATTATAGAAAAGGCACATTACAACACGGCTTCAGGGAATTAAATATATCAGAGTCAGGCCAATGCTGGAGGCCTAATGGAAGGGGAGTTCAGTCATTGAATAATGATTTATGGCCATCTGGAAATAATGTCTCTCAAGACAGAAACTTTGCTGGTCATGGTTCACAGTCCTATCATACTTGGGGCCGTGGCAGAGGGCAACACAATTCGTGGCAGCACACCTATCCCTTTGCTGGTACAGGTAGAGGCCAGCAAGACCCTTGGACACACACCCGGCCTCCTTTTGCTGCTAACCGTTCATCATCACATGCCGGTGGAAGAGGAAACTTTATTCAACGTAGTCATGTAGAAAGTCAGAATGGGCAGCGGTGGGCAGGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

605

Amino Acids

68.79

Weight (kDa)

6.79

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 255	7.8e-102	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	314 - 370	2.5e-28	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AarI	CACCTGC	1 cut(s)	826
Acc36I	ACCTGC	1 cut(s)	826
Acc65I	GGTACC	1 cut(s)	1427
AccB1I	GGYRCC	1 cut(s)	1427
AccI	GTMKAC	1 cut(s)	1065
AccII	CGCG	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	7 cut(s)	71, 212, 679, 704, 992, 1183, 1801
AclWI	GGATC	4 cut(s)	87, 662, 714, 917
AcoI	YGGCCR	1 cut(s)	1547
AcsI	RAATTY	4 cut(s)	1029, 1076, 1256, 1292
AcuI	CTGAAG	2 cut(s)	414, 1450
AfaI	GTAC	5 cut(s)	41, 506, 845, 1429, 1672
AfiI	CCNNNNNNNGG	4 cut(s)	49, 493, 611, 1667
AgsI	TTSAA	9 cut(s)	68, 238, 271, 422, 1081, 1266, 1284, 1534, 1769
AjnI	CCWGG	5 cut(s)	350, 487, 604, 1164, 1219
AloI	GAACNNNNNNTCC	2 cut(s)	1506, 1538
AluBI	AGCT	8 cut(s)	99, 531, 904, 1135, 1242, 1269, 1410, 1815
AluI	AGCT	8 cut(s)	99, 531, 904, 1135, 1242, 1269, 1410, 1815
Alw26I	GTCTC	2 cut(s)	1344, 1570
AlwI	GGATC	4 cut(s)	87, 662, 714, 917
AlwNI	CAGNNNCTG	1 cut(s)	871
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	6 cut(s)	1492, 1505, 1547, 1618, 1681, 1709
ApeKI	GCWGC	5 cut(s)	784, 1185, 1648, 1721, 1798
ApoI	RAATTY	4 cut(s)	1029, 1076, 1256, 1292
ArsI	GACNNNNNNTTYG	2 cut(s)	1565, 1597
Asp700I	GAANNNNTTC	1 cut(s)	1076
Asp718I	GGTACC	1 cut(s)	1427
AspLEI	GCGC	2 cut(s)	348, 350
AspS9I	GGNCC	1 cut(s)	1618
AsuC2I	CCSGG	1 cut(s)	1708
AsuHPI	GGTGA	6 cut(s)	67, 475, 635, 734, 807, 1235
AsuII	TTCGAA	2 cut(s)	249, 526
BalI	TGGCCA	1 cut(s)	1549
BanI	GGYRCC	1 cut(s)	1427
BbsI	GAAGAC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	5 cut(s)	796, 1197, 1660, 1708, 1810
BccI	CCATC	6 cut(s)	168, 188, 305, 1200, 1302, 1558
BceAI	ACGGC	2 cut(s)	1477, 1605
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	5 cut(s)	352, 489, 606, 1166, 1221
BclI	TGATCA	1 cut(s)	1384
BcnI	CCSGG	1 cut(s)	1708
BcoDI	GTCTC	2 cut(s)	1344, 1570
BfaI	CTAG	3 cut(s)	89, 140, 1407
BfuAI	ACCTGC	1 cut(s)	826
BisI	GCNGC	5 cut(s)	785, 1186, 1649, 1722, 1799
BlsI	GCNGC	5 cut(s)	786, 1187, 1650, 1723, 1800
Bme1390I	CCNGG	6 cut(s)	352, 489, 606, 1166, 1221, 1708
BmgT120I	GGNCC	1 cut(s)	1618
BmiI	GGNNCC	2 cut(s)	1429, 1619
BmrFI	CCNGG	6 cut(s)	352, 489, 606, 1166, 1221, 1708
BmsI	GCATC	4 cut(s)	82, 583, 691, 1197
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	3 cut(s)	586, 920, 1522
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	2 cut(s)	249, 526
BpuEI	CTTGAG	2 cut(s)	971, 1554
BpuMI	CCSGG	1 cut(s)	1708
BsaBI	GATNNNNATC	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	1344
BsaJI	CCNNGG	9 cut(s)	284, 323, 487, 516, 605, 1165, 1422, 1621, 1694
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	4 cut(s)	1341, 1371, 1696, 1726
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 493, 611, 1667
Bse118I	RCCGGY	1 cut(s)	1745
Bse1I	ACTGG	1 cut(s)	1380
Bse3DI	GCAATG	2 cut(s)	375, 682
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	5 cut(s)	352, 489, 606, 1166, 1221
BseDI	CCNNGG	9 cut(s)	284, 323, 487, 516, 605, 1165, 1422, 1621, 1694
BseGI	GGATG	5 cut(s)	160, 172, 706, 1188, 1313
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	4 cut(s)	49, 493, 611, 1667
BseMI	GCAATG	2 cut(s)	375, 682
BseMII	CTCAG	3 cut(s)	378, 921, 1446
BseNI	ACTGG	1 cut(s)	1380
BsePI	GCGCGC	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	1338
BseXI	GCAGC	5 cut(s)	796, 1197, 1660, 1708, 1810
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	6 cut(s)	1494, 1507, 1549, 1620, 1683, 1711
BshNI	GGYRCC	1 cut(s)	1427
BsiSI	CCGG	3 cut(s)	176, 1708, 1746
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	4 cut(s)	49, 493, 611, 1667
BsmAI	GTCTC	2 cut(s)	1344, 1570
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	1166
BsnI	GGCC	6 cut(s)	1494, 1507, 1549, 1620, 1683, 1711
Bso31I	GGTCTC	1 cut(s)	1344
Bsp119I	TTCGAA	2 cut(s)	249, 526
Bsp13I	TCCGGA	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	7 cut(s)	79, 259, 667, 706, 922, 946, 1384
BspACI	CCGC	7 cut(s)	71, 212, 679, 704, 992, 1183, 1801
BspANI	GGCC	6 cut(s)	1494, 1507, 1549, 1620, 1683, 1711
BspCNI	CTCAG	3 cut(s)	379, 922, 1445
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	1033
BspLI	GGNNCC	2 cut(s)	1429, 1619
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	4 cut(s)	87, 662, 714, 917
BspQI	GCTCTTC	1 cut(s)	528
BspT104I	TTCGAA	2 cut(s)	249, 526
BspT107I	GGYRCC	1 cut(s)	1427
BspTNI	GGTCTC	1 cut(s)	1344
BsrDI	GCAATG	2 cut(s)	375, 682
BsrFI	RCCGGY	1 cut(s)	1745
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	1380
BssAI	RCCGGY	1 cut(s)	1745
BssECI	CCNNGG	9 cut(s)	284, 323, 487, 516, 605, 1165, 1422, 1621, 1694
BssHII	GCGCGC	1 cut(s)	346
BssMI	GATC	7 cut(s)	79, 259, 667, 706, 922, 946, 1384
BssT1I	CCWWGG	4 cut(s)	284, 516, 1422, 1694
Bst2UI	CCWGG	5 cut(s)	352, 489, 606, 1166, 1221
Bst4CI	ACNGT	6 cut(s)	655, 800, 1063, 1147, 1602, 1730
Bst6I	CTCTTC	3 cut(s)	393, 528, 1747
BstAUI	TGTACA	1 cut(s)	504
BstBI	TTCGAA	2 cut(s)	249, 526
BstC8I	GCNNGC	7 cut(s)	97, 101, 348, 1179, 1183, 1240, 1685
BstDEI	CTNAG	5 cut(s)	387, 407, 755, 930, 1432
BstDSI	CCRYGG	1 cut(s)	1621
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstF5I	GGATG	5 cut(s)	160, 172, 706, 1188, 1313
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	348, 350
BstKTI	GATC	7 cut(s)	82, 262, 670, 709, 925, 949, 1387
BstMAI	GTCTC	2 cut(s)	1344, 1570
BstMBI	GATC	7 cut(s)	79, 259, 667, 706, 922, 946, 1384
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 326, 352, 910
BstNI	CCWGG	5 cut(s)	352, 489, 606, 1166, 1221
BstNSI	RCATGY	5 cut(s)	794, 878, 913, 1018, 1745
BstSCI	CCNGG	6 cut(s)	350, 487, 604, 1164, 1219, 1706
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	5 cut(s)	796, 1197, 1660, 1708, 1810
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	6 cut(s)	1494, 1507, 1549, 1620, 1683, 1711
BtgI	CCRYGG	1 cut(s)	1621
BtsCI	GGATG	5 cut(s)	160, 172, 706, 1188, 1313
BtsIMutI	CAGTG	1 cut(s)	1387
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	7 cut(s)	97, 101, 348, 1179, 1183, 1240, 1685
CaiI	CAGNNNCTG	1 cut(s)	871
CciI	TCATGA	1 cut(s)	1033
CfoI	GCGC	2 cut(s)	348, 350
Cfr10I	RCCGGY	1 cut(s)	1745
Cfr13I	GGNCC	1 cut(s)	1618
CsiI	ACCWGGT	1 cut(s)	1219
Csp6I	GTAC	5 cut(s)	40, 505, 844, 1428, 1671
CviQI	GTAC	5 cut(s)	40, 505, 844, 1428, 1671
DdeI	CTNAG	5 cut(s)	387, 407, 755, 930, 1432
DpnI	GATC	7 cut(s)	81, 261, 669, 708, 924, 948, 1386
DpnII	GATC	7 cut(s)	79, 259, 667, 706, 922, 946, 1384
EaeI	YGGCCR	1 cut(s)	1547
Eam1104I	CTCTTC	3 cut(s)	393, 528, 1747
EarI	CTCTTC	3 cut(s)	393, 528, 1747
Eco130I	CCWWGG	4 cut(s)	284, 516, 1422, 1694
Eco147I	AGGCCT	1 cut(s)	1507
Eco31I	GGTCTC	1 cut(s)	1344
Eco57I	CTGAAG	2 cut(s)	414, 1450
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	1076
EcoRII	CCWGG	5 cut(s)	350, 487, 604, 1164, 1219
EcoT14I	CCWWGG	4 cut(s)	284, 516, 1422, 1694
ErhI	CCWWGG	4 cut(s)	284, 516, 1422, 1694
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	1 cut(s)	584
FauI	CCCGC	4 cut(s)	64, 686, 985, 1190
FbaI	TGATCA	1 cut(s)	1384
FblI	GTMKAC	1 cut(s)	1065
Fnu4HI	GCNGC	5 cut(s)	785, 1186, 1649, 1722, 1799
FokI	GGATG	5 cut(s)	147, 159, 713, 1175, 1320
Fsp4HI	GCNGC	5 cut(s)	785, 1186, 1649, 1722, 1799
FspBI	CTAG	3 cut(s)	89, 140, 1407
GlaI	GCGC	2 cut(s)	347, 349
GluI	GCNGC	5 cut(s)	785, 1186, 1649, 1722, 1799
GsuI	CTGGAG	3 cut(s)	586, 920, 1522
HaeIII	GGCC	6 cut(s)	1494, 1507, 1549, 1620, 1683, 1711
HapII	CCGG	3 cut(s)	176, 1708, 1746
HhaI	GCGC	2 cut(s)	348, 350
Hin6I	GCGC	2 cut(s)	346, 348
HinP1I	GCGC	2 cut(s)	346, 348
HindIII	AAGCTT	2 cut(s)	97, 1240
HinfI	GANTC	8 cut(s)	337, 379, 455, 470, 557, 957, 1111, 1487
HpaII	CCGG	3 cut(s)	176, 1708, 1746
HphI	GGTGA	6 cut(s)	67, 475, 635, 734, 807, 1235
Hpy166II	GTNNAC	4 cut(s)	34, 742, 1066, 1598
Hpy188I	TCNGA	9 cut(s)	324, 460, 469, 592, 829, 1116, 1435, 1486, 1791
Hpy8I	GTNNAC	4 cut(s)	34, 742, 1066, 1598
HpyAV	CCTTC	4 cut(s)	422, 605, 669, 1509
HpyCH4III	ACNGT	6 cut(s)	655, 800, 1063, 1147, 1602, 1730
HpyCH4IV	ACGT	3 cut(s)	544, 640, 1771
HpyCH4V	TGCA	8 cut(s)	95, 209, 794, 821, 874, 913, 1043, 1238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 326, 352, 910
HpyF3I	CTNAG	5 cut(s)	387, 407, 755, 930, 1432
HpySE526I	ACGT	3 cut(s)	544, 640, 1771
HspAI	GCGC	2 cut(s)	346, 348
Kpn2I	TCCGGA	1 cut(s)	175
KpnI	GGTACC	1 cut(s)	1431
Ksp22I	TGATCA	1 cut(s)	1384
Kzo9I	GATC	7 cut(s)	79, 259, 667, 706, 922, 946, 1384
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	5 cut(s)	325, 901, 1325, 1369, 1812
Lsp1109I	GCAGC	5 cut(s)	796, 1197, 1660, 1708, 1810
LweI	GCATC	4 cut(s)	82, 583, 691, 1197
MabI	ACCWGGT	1 cut(s)	1219
MaeI	CTAG	3 cut(s)	89, 140, 1407
MaeII	ACGT	3 cut(s)	544, 640, 1771
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	7 cut(s)	81, 261, 669, 708, 924, 948, 1386
MboI	GATC	7 cut(s)	79, 259, 667, 706, 922, 946, 1384
MboII	GAAGA	8 cut(s)	191, 194, 226, 239, 407, 410, 515, 1764
MfeI	CAATTG	2 cut(s)	803, 1044
MflI	RGATCY	1 cut(s)	706
MlsI	TGGCCA	1 cut(s)	1549
MluNI	TGGCCA	1 cut(s)	1549
MlyI	GAGTC	1 cut(s)	1496
Mox20I	TGGCCA	1 cut(s)	1549
MroI	TCCGGA	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	1076
MscI	TGGCCA	1 cut(s)	1549
MseI	TTAA	4 cut(s)	360, 548, 939, 1475
MslI	CAYNNNNRTG	2 cut(s)	1038, 1746
Msp20I	TGGCCA	1 cut(s)	1549
MspA1I	CMGCKG	1 cut(s)	1801
MspI	CCGG	3 cut(s)	176, 1708, 1746
MspR9I	CCNGG	6 cut(s)	352, 489, 606, 1166, 1221, 1708
MunI	CAATTG	2 cut(s)	803, 1044
Mva1269I	GAATGC	1 cut(s)	1166
MvaI	CCWGG	5 cut(s)	352, 489, 606, 1166, 1221
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	68, 326, 352, 910
NciI	CCSGG	1 cut(s)	1708
NdeII	GATC	7 cut(s)	79, 259, 667, 706, 922, 946, 1384
NlaIV	GGNNCC	2 cut(s)	1429, 1619
NmuCI	GTSAC	1 cut(s)	641
NspI	RCATGY	5 cut(s)	794, 878, 913, 1018, 1745
NspV	TTCGAA	2 cut(s)	249, 526
PagI	TCATGA	1 cut(s)	1033
PaqCI	CACCTGC	1 cut(s)	826
PauI	GCGCGC	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	1507
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	1 cut(s)	1166
PdmI	GAANNNNTTC	1 cut(s)	1076
PfeI	GAWTC	7 cut(s)	337, 379, 455, 470, 557, 957, 1111
PkrI	GCNGC	5 cut(s)	786, 1187, 1650, 1723, 1800
PleI	GAGTC	1 cut(s)	1495
PpsI	GAGTC	1 cut(s)	1495
PsiI	TTATAA	1 cut(s)	713
Psp6I	CCWGG	5 cut(s)	350, 487, 604, 1164, 1219
PspGI	CCWGG	5 cut(s)	350, 487, 604, 1164, 1219
PspN4I	GGNNCC	2 cut(s)	1429, 1619
PspPI	GGNCC	1 cut(s)	1618
PstNI	CAGNNNCTG	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	706
PteI	GCGCGC	1 cut(s)	346
RsaI	GTAC	5 cut(s)	41, 506, 845, 1429, 1672
RsaNI	GTAC	5 cut(s)	40, 505, 844, 1428, 1671
RseI	CAYNNNNRTG	2 cut(s)	1038, 1746
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	360, 548, 939, 1475
SatI	GCNGC	5 cut(s)	785, 1186, 1649, 1722, 1799
Sau3AI	GATC	7 cut(s)	79, 259, 667, 706, 922, 946, 1384
Sau96I	GGNCC	1 cut(s)	1618
SchI	GAGTC	1 cut(s)	1496
ScrFI	CCNGG	6 cut(s)	352, 489, 606, 1166, 1221, 1708
SexAI	ACCWGGT	1 cut(s)	1219
SfaNI	GCATC	4 cut(s)	82, 583, 691, 1197
SfuI	TTCGAA	2 cut(s)	249, 526
SmiMI	CAYNNNNRTG	2 cut(s)	1038, 1746
SmlI	CTYRAG	2 cut(s)	950, 1569
SmoI	CTYRAG	2 cut(s)	950, 1569
SseBI	AGGCCT	1 cut(s)	1507
SsiI	CCGC	7 cut(s)	71, 212, 679, 704, 992, 1183, 1801
SspI	AATATT	3 cut(s)	244, 274, 1087
SspMI	CTAG	3 cut(s)	89, 140, 1407
StuI	AGGCCT	1 cut(s)	1507
StyD4I	CCNGG	6 cut(s)	350, 487, 604, 1164, 1219, 1706
StyI	CCWWGG	4 cut(s)	284, 516, 1422, 1694
TaaI	ACNGT	6 cut(s)	655, 800, 1063, 1147, 1602, 1730
TaiI	ACGT	3 cut(s)	547, 643, 1774
TaqI	TCGA	3 cut(s)	126, 249, 526
TaqII	GACCGA	1 cut(s)	1368
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	7 cut(s)	337, 379, 455, 470, 557, 957, 1111
Tru1I	TTAA	4 cut(s)	360, 548, 939, 1475
Tru9I	TTAA	4 cut(s)	360, 548, 939, 1475
TscAI	CASTG	1 cut(s)	1387
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	5 cut(s)	784, 1185, 1648, 1721, 1798
Tsp45I	GTSAC	1 cut(s)	641
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	1387
XagI	CCTNNNNNAGG	1 cut(s)	609
XapI	RAATTY	4 cut(s)	1029, 1076, 1256, 1292
XbaI	TCTAGA	2 cut(s)	88, 139
XceI	RCATGY	5 cut(s)	794, 878, 913, 1018, 1745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	1065
XmnI	GAANNNNTTC	1 cut(s)	1076
XspI	CTAG	3 cut(s)	89, 140, 1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.