Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

44314974 .. 44322847

Gene Structure 7874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32565

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2484 bp

ATGGGGGTTTCATCGTTTTTTCGTTGGTTGGTAAACAAGTACCCTAAAGTGGTGGTGAAAGCCATTGAAGCGGGAGAGGATCAGTTTCTAGATGCAAGCTTGCCAAACCCAAATGGCATAGAGTTCGATAACCTGTTTCTAGACATGAATGGGATTATCCATCCCTGCTTTCATCCGGAAGAAGATGATGATGATGGTTATGGACTTGCACCGCCAAGAACTTATGAAGATGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATGGAGTTGCTCCGAGGGCTAAAATGAATCAACAGCGCGCCAGGCGTTTTAAGTCGGCAATGGACAAGAATCTTGCTGAAGCTGAAGAAGAGAAACTAAGACAGCAATTTGAAAAGGAAGGGAAAAAAATCCTACTAGAACAGGAGTCCGAAGTTTCTGATTCTAATATAATCACCCCTGGAACGGATTTCATGTACAAGTTATCCAAGGCTCTTCAAAGCTACATCAATCTACGTTTAAGCCAAGATTCAGGCTGGAGGGACATCAAGGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGATGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGTATGGTCTGGATGCGGATCTTATAATGTTGTCTTTGGCAACACATGAAGTTCACCTTTCCATACTAAGAGAGAATTTACTAATCCAAAACCAGCAGCAACATGCAAACAGTCAATTGACAATTTCATCTGCAATATCAGACAAAAGAACAGCGCACATGATGAAAAAGCCTTATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAGTGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGTATCATTGATGATTTCATCTTTATATGTTTCTTCGCGGGAAATGATTTTTTACCCCACATGCCAACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCAGGTTCATGACAAGAAGTTGGGGTACATCAAACTATCTAGAGTTGAGAAATTTGTTCTCCTTATTGGAGCATTTGAAGAGAAAATATTCAAGAAAAGATTAGATATACGAGAACGTAAACTCAGACGTCTTTGCTATAACAATGATTGGATAGAGGAAGACATTGATGCTGGAAGTTCAAACTTTAATTTCGAGGCAATTGAAGGATCTGCAGTTGTTTCAGTGGATAATGTTTCATCTTCCAAAATTGTGGAAAACACAAAGGAATTCAAGCAAAAATTGAAGGCCAGCATTAGAAGAAAATCTGATCTGTTTAGGAATGGTGATTTTGGCACTAACAAAGTACGATTGGGTGCTACAGGATTCAAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCCGGGGGAGATTGAAAACAAAAGGAAGGAAGTAGTTAAAAGCTACACAGAAGGACTGCTCTGGGTTCTTTTATACTACTTTTCCGGCCCCCCATCGTGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAGCTCAGGTCAAACCACAATTTGAGAAAGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGCGCTCATGCACTTCCTAAGGATTATAGGACACTTATGATGGAAGAGTGTTCCACAATCATTGATTTTTACCCTTCTGACTTCGAAATTGATATGGATGGGAAGAGATTTACGTGGCAGGTTTGGTGGTTTTGTTTTCTTCACATGCACCATTTTTCTAGTGTTCTGTTAAAGATCCTCTCGCGTTGCTTTCCATCGACTCTACTGATCTTCTATTTTTTAAAATTGGTTGTAACATGTTGTCTTCTAAAGGGTATCTGCAAACTTCCCTTTATAGAAGAATCCCGACTTCTACATGAGACCAGAAAATTGGAAAAGGAACTAATGGCAGAAGAAATTGACAGGAATGCTGAGAAACTTGATCAGTTATTCATGCGAAGCACCCACAGTATGGCATCACAAATTGTTTCACTGTCTAATGGTGACAATCAGTCGATTAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCAGCAGCTTGATGACAATGATGCCAATGTCAAAGAAAGAGATGATAGCTCTGAAGAAGACTCTGTCTTATGTGCCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCATTTGCTTGATGGTGTACAACATCCTTCCAAGACAATCAATGAACACGAGCTTATGGAAACAGTTCTATGGCATGAATGTCAGGGAAATGTGACCACCCGCAGCATCCAGCAAGTACAGGCAAGGTTTAGTCCGTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

827

Amino Acids

95.94

Weight (kDa)

5.97

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 255	1.4e-101	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	314 - 624	3.2e-117	Xrn1 helical domain
XRN_M	PF17846	667 - 796	1.8e-22	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AatII	GACGTC	1 cut(s)	1243
Acc36I	ACCTGC	1 cut(s)	1858
AccB7I	CCANNNNNTGG	1 cut(s)	2140
AccI	GTMKAC	1 cut(s)	1065
AccII	CGCG	3 cut(s)	348, 992, 1933
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	6 cut(s)	71, 212, 679, 704, 992, 2440
AclWI	GGATC	6 cut(s)	87, 662, 714, 917, 1327, 1918
AcsI	RAATTY	6 cut(s)	763, 1029, 1076, 1163, 1379, 1502
AcuI	CTGAAG	3 cut(s)	408, 414, 2301
AcyI	GRCGYC	1 cut(s)	1240
AfaI	GTAC	6 cut(s)	41, 506, 1139, 1458, 2358, 2457
AfeI	AGCGCT	1 cut(s)	1753
AfiI	CCNNNNNNNGG	6 cut(s)	49, 493, 611, 1614, 1675, 2140
AflIII	ACRYGT	1 cut(s)	1985
AhdI	GACNNNNNGTC	1 cut(s)	2179
AjnI	CCWGG	3 cut(s)	350, 487, 604
Alw26I	GTCTC	1 cut(s)	2042
AlwI	GGATC	6 cut(s)	87, 662, 714, 917, 1327, 1918
AlwNI	CAGNNNCTG	1 cut(s)	871
Ama87I	CYCGRG	1 cut(s)	1519
Aor13HI	TCCGGA	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	1753
AoxI	GGCC	3 cut(s)	1398, 1603, 1666
ApeKI	GCWGC	3 cut(s)	784, 2233, 2442
ApoI	RAATTY	6 cut(s)	763, 1029, 1076, 1163, 1379, 1502
Asp700I	GAANNNNTTC	3 cut(s)	1076, 1199, 2403
AspLEI	GCGC	4 cut(s)	348, 350, 844, 1754
AspS9I	GGNCC	3 cut(s)	1604, 1643, 1666
AsuC2I	CCSGG	2 cut(s)	1520, 1521
AsuHPI	GGTGA	6 cut(s)	67, 475, 635, 734, 1448, 2183
AsuII	TTCGAA	2 cut(s)	249, 1833
AvaI	CYCGRG	1 cut(s)	1519
AvaII	GGWCC	1 cut(s)	1643
AxyI	CCTNAGG	1 cut(s)	1767
BaeGI	GKGCMC	1 cut(s)	2305
BarI	GAAGNNNNNNTAC	2 cut(s)	1121, 1153
BauI	CACGAG	1 cut(s)	2387
BbsI	GAAGAC	4 cut(s)	226, 1278, 1985, 2292
BbvI	GCAGC	3 cut(s)	796, 2245, 2454
BccI	CCATC	8 cut(s)	168, 188, 305, 1618, 1783, 1841, 1951, 2345
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	3 cut(s)	352, 489, 606
BclI	TGATCA	1 cut(s)	2110
BcnI	CCSGG	2 cut(s)	1520, 1521
BcoDI	GTCTC	1 cut(s)	2042
BfaI	CTAG	6 cut(s)	89, 140, 446, 1152, 1670, 1908
BfmI	CTRYAG	3 cut(s)	1323, 1470, 1716
BfoI	RGCGCY	1 cut(s)	1755
BfuAI	ACCTGC	1 cut(s)	1858
BisI	GCNGC	3 cut(s)	785, 2234, 2443
BlsI	GCNGC	3 cut(s)	786, 2235, 2444
Bme1390I	CCNGG	5 cut(s)	352, 489, 606, 1520, 1521
Bme18I	GGWCC	1 cut(s)	1643
BmeRI	GACNNNNNGTC	1 cut(s)	2179
BmeT110I	CYCGRG	1 cut(s)	1519
BmgT120I	GGNCC	3 cut(s)	1604, 1643, 1666
BmiI	GGNNCC	2 cut(s)	1606, 1702
BmrFI	CCNGG	5 cut(s)	352, 489, 606, 1520, 1521
BmsI	GCATC	7 cut(s)	82, 583, 691, 1270, 2153, 2239, 2454
BpiI	GAAGAC	4 cut(s)	226, 1278, 1985, 2292
BpmI	CTGGAG	2 cut(s)	586, 920
Bpu10I	CCTNAGC	1 cut(s)	1674
Bpu14I	TTCGAA	2 cut(s)	249, 1833
BpuEI	CTTGAG	1 cut(s)	971
BpuMI	CCSGG	2 cut(s)	1520, 1521
BsaAI	YACGTR	1 cut(s)	1863
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	1240
BsaI	GGTCTC	1 cut(s)	2042
BsaJI	CCNNGG	7 cut(s)	284, 323, 487, 516, 605, 1519, 1520
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 493, 611, 1614, 1675, 2140
Bse21I	CCTNAGG	1 cut(s)	1767
Bse3DI	GCAATG	2 cut(s)	375, 682
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	3 cut(s)	352, 489, 606
BseDI	CCNNGG	7 cut(s)	284, 323, 487, 516, 605, 1519, 1520
BseGI	GGATG	6 cut(s)	160, 172, 706, 1852, 2362, 2445
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	6 cut(s)	49, 493, 611, 1614, 1675, 2140
BseMI	GCAATG	2 cut(s)	375, 682
BseMII	CTCAG	4 cut(s)	921, 1249, 1688, 2091
BsePI	GCGCGC	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	2305
BseXI	GCAGC	3 cut(s)	796, 2245, 2454
Bsh1236I	CGCG	3 cut(s)	348, 992, 1933
BshFI	GGCC	3 cut(s)	1400, 1605, 1668
BsiHKCI	CYCGRG	1 cut(s)	1519
BsiSI	CCGG	3 cut(s)	176, 1520, 1602
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	6 cut(s)	49, 493, 611, 1614, 1675, 2140
BsmAI	GTCTC	1 cut(s)	2042
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	2101
BsnI	GGCC	3 cut(s)	1400, 1605, 1668
Bso31I	GGTCTC	1 cut(s)	2042
BsoBI	CYCGRG	1 cut(s)	1519
Bsp119I	TTCGAA	2 cut(s)	249, 1833
Bsp1286I	GDGCHC	1 cut(s)	2305
Bsp13I	TCCGGA	1 cut(s)	175
Bsp1407I	TGTACA	2 cut(s)	504, 2356
BspACI	CCGC	6 cut(s)	71, 212, 679, 704, 992, 2440
BspANI	GGCC	3 cut(s)	1400, 1605, 1668
BspCNI	CTCAG	4 cut(s)	922, 1248, 1687, 2092
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	3 cut(s)	348, 992, 1933
BspHI	TCATGA	2 cut(s)	1033, 1120
BspLI	GGNNCC	2 cut(s)	1606, 1702
BspMAI	CTGCAG	1 cut(s)	1327
BspMI	ACCTGC	1 cut(s)	1858
BspPI	GGATC	6 cut(s)	87, 662, 714, 917, 1327, 1918
BspQI	GCTCTTC	1 cut(s)	528
BspT104I	TTCGAA	2 cut(s)	249, 1833
BspTNI	GGTCTC	1 cut(s)	2042
BsrDI	GCAATG	2 cut(s)	375, 682
BsrGI	TGTACA	2 cut(s)	504, 2356
BssECI	CCNNGG	7 cut(s)	284, 323, 487, 516, 605, 1519, 1520
BssHII	GCGCGC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	1240
BssSI	CACGAG	1 cut(s)	2387
BssT1I	CCWWGG	2 cut(s)	284, 516
Bst2BI	CACGAG	1 cut(s)	2387
Bst2UI	CCWGG	3 cut(s)	352, 489, 606
Bst4CI	ACNGT	6 cut(s)	655, 800, 1063, 2138, 2163, 2404
Bst6I	CTCTTC	5 cut(s)	393, 528, 1185, 1788, 1847
BstACI	GRCGYC	1 cut(s)	1240
BstAUI	TGTACA	2 cut(s)	504, 2356
BstBAI	YACGTR	1 cut(s)	1863
BstBI	TTCGAA	2 cut(s)	249, 1833
BstC8I	GCNNGC	4 cut(s)	97, 101, 348, 1402
BstDEI	CTNAG	7 cut(s)	407, 755, 930, 1235, 1674, 1767, 2100
BstENI	CCTNNNNNAGG	2 cut(s)	609, 1673
BstF5I	GGATG	6 cut(s)	160, 172, 706, 1852, 2362, 2445
BstFNI	CGCG	3 cut(s)	348, 992, 1933
BstH2I	RGCGCY	1 cut(s)	1755
BstHHI	GCGC	4 cut(s)	348, 350, 844, 1754
BstMAI	GTCTC	1 cut(s)	2042
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 910, 2344
BstNI	CCWGG	3 cut(s)	352, 489, 606
BstNSI	RCATGY	6 cut(s)	794, 878, 913, 1018, 1897, 1989
BstSCI	CCNGG	5 cut(s)	350, 487, 604, 1518, 1519
BstSFI	CTRYAG	3 cut(s)	1323, 1470, 1716
BstSLI	GKGCMC	1 cut(s)	2305
BstUI	CGCG	3 cut(s)	348, 992, 1933
BstV1I	GCAGC	3 cut(s)	796, 2245, 2454
BstV2I	GAAGAC	4 cut(s)	226, 1278, 1985, 2292
BstX2I	RGATCY	3 cut(s)	706, 1319, 1923
BstXI	CCANNNNNNTGG	2 cut(s)	1363, 2059
BstYI	RGATCY	3 cut(s)	706, 1319, 1923
Bsu36I	CCTNAGG	1 cut(s)	1767
BsuRI	GGCC	3 cut(s)	1400, 1605, 1668
BtsCI	GGATG	6 cut(s)	160, 172, 706, 1852, 2362, 2445
BtsIMutI	CAGTG	4 cut(s)	925, 1341, 2159, 2224
BveI	ACCTGC	1 cut(s)	1858
Cac8I	GCNNGC	4 cut(s)	97, 101, 348, 1402
CaiI	CAGNNNCTG	1 cut(s)	871
CciI	TCATGA	2 cut(s)	1033, 1120
CfoI	GCGC	4 cut(s)	348, 350, 844, 1754
Cfr13I	GGNCC	3 cut(s)	1604, 1643, 1666
Cfr9I	CCCGGG	1 cut(s)	1519
Csp6I	GTAC	6 cut(s)	40, 505, 1138, 1457, 2357, 2456
CspCI	CAANNNNNGTGG	2 cut(s)	1792, 1827
CviQI	GTAC	6 cut(s)	40, 505, 1138, 1457, 2357, 2456
DdeI	CTNAG	7 cut(s)	407, 755, 930, 1235, 1674, 1767, 2100
DraI	TTTAAA	2 cut(s)	1711, 1971
DriI	GACNNNNNGTC	1 cut(s)	2179
Eam1104I	CTCTTC	5 cut(s)	393, 528, 1185, 1788, 1847
Eam1105I	GACNNNNNGTC	1 cut(s)	2179
EarI	CTCTTC	5 cut(s)	393, 528, 1185, 1788, 1847
Eco130I	CCWWGG	2 cut(s)	284, 516
Eco31I	GGTCTC	1 cut(s)	2042
Eco47I	GGWCC	1 cut(s)	1643
Eco47III	AGCGCT	1 cut(s)	1753
Eco57I	CTGAAG	3 cut(s)	408, 414, 2301
Eco81I	CCTNAGG	1 cut(s)	1767
Eco88I	CYCGRG	1 cut(s)	1519
EcoNI	CCTNNNNNAGG	2 cut(s)	609, 1673
EcoO109I	RGGNCCY	1 cut(s)	1666
EcoRI	GAATTC	2 cut(s)	1076, 1379
EcoRII	CCWGG	3 cut(s)	350, 487, 604
EcoT14I	CCWWGG	2 cut(s)	284, 516
ErhI	CCWWGG	2 cut(s)	284, 516
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	1 cut(s)	584
FauI	CCCGC	4 cut(s)	64, 686, 985, 2447
FauNDI	CATATG	1 cut(s)	2334
FbaI	TGATCA	1 cut(s)	2110
FblI	GTMKAC	1 cut(s)	1065
Fnu4HI	GCNGC	3 cut(s)	785, 2234, 2443
FokI	GGATG	6 cut(s)	147, 159, 713, 1859, 2349, 2432
Fsp4HI	GCNGC	3 cut(s)	785, 2234, 2443
FspBI	CTAG	6 cut(s)	89, 140, 446, 1152, 1670, 1908
GlaI	GCGC	4 cut(s)	347, 349, 843, 1753
GluI	GCNGC	3 cut(s)	785, 2234, 2443
GsuI	CTGGAG	2 cut(s)	586, 920
HaeII	RGCGCY	1 cut(s)	1755
HaeIII	GGCC	3 cut(s)	1400, 1605, 1668
HapII	CCGG	3 cut(s)	176, 1520, 1602
HhaI	GCGC	4 cut(s)	348, 350, 844, 1754
Hin1I	GRCGYC	1 cut(s)	1240
Hin6I	GCGC	4 cut(s)	346, 348, 842, 1752
HinP1I	GCGC	4 cut(s)	346, 348, 842, 1752
HindIII	AAGCTT	1 cut(s)	97
HpaII	CCGG	3 cut(s)	176, 1520, 1602
HphI	GGTGA	6 cut(s)	67, 475, 635, 734, 1448, 2183
Hpy166II	GTNNAC	5 cut(s)	34, 742, 1066, 1232, 2357
Hpy8I	GTNNAC	5 cut(s)	34, 742, 1066, 1232, 2357
HpyCH4III	ACNGT	6 cut(s)	655, 800, 1063, 2138, 2163, 2404
HpyCH4IV	ACGT	5 cut(s)	544, 640, 1228, 1240, 1862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 910, 2344
HpyF3I	CTNAG	7 cut(s)	407, 755, 930, 1235, 1674, 1767, 2100
HpySE526I	ACGT	5 cut(s)	544, 640, 1228, 1240, 1862
Hsp92I	GRCGYC	1 cut(s)	1240
HspAI	GCGC	4 cut(s)	346, 348, 842, 1752
Kpn2I	TCCGGA	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	2110
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	3 cut(s)	325, 901, 1181
Lsp1109I	GCAGC	3 cut(s)	796, 2245, 2454
LweI	GCATC	7 cut(s)	82, 583, 691, 1270, 2153, 2239, 2454
MaeI	CTAG	6 cut(s)	89, 140, 446, 1152, 1670, 1908
MaeII	ACGT	5 cut(s)	544, 640, 1228, 1240, 1862
MaeIII	GTNAC	4 cut(s)	641, 1981, 2171, 2431
MfeI	CAATTG	3 cut(s)	803, 1044, 1311
MflI	RGATCY	3 cut(s)	706, 1319, 1923
MhlI	GDGCHC	1 cut(s)	2305
MlyI	GAGTC	3 cut(s)	464, 1942, 2282
MroI	TCCGGA	1 cut(s)	175
MroXI	GAANNNNTTC	3 cut(s)	1076, 1199, 2403
MseI	TTAA	9 cut(s)	360, 548, 939, 1299, 1554, 1710, 1919, 1970, 2187
MslI	CAYNNNNRTG	1 cut(s)	1038
MspI	CCGG	3 cut(s)	176, 1520, 1602
MspR9I	CCNGG	5 cut(s)	352, 489, 606, 1520, 1521
MunI	CAATTG	3 cut(s)	803, 1044, 1311
Mva1269I	GAATGC	1 cut(s)	2101
MvaI	CCWGG	3 cut(s)	352, 489, 606
MvnI	CGCG	3 cut(s)	348, 992, 1933
MwoI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 910, 2344
NciI	CCSGG	2 cut(s)	1520, 1521
NdeI	CATATG	1 cut(s)	2334
NlaIV	GGNNCC	2 cut(s)	1606, 1702
NmuCI	GTSAC	3 cut(s)	641, 2171, 2431
NspI	RCATGY	6 cut(s)	794, 878, 913, 1018, 1897, 1989
NspV	TTCGAA	2 cut(s)	249, 1833
PagI	TCATGA	2 cut(s)	1033, 1120
PauI	GCGCGC	1 cut(s)	346
PciI	ACATGT	1 cut(s)	1985
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	1 cut(s)	2101
PdmI	GAANNNNTTC	3 cut(s)	1076, 1199, 2403
PfeI	GAWTC	8 cut(s)	337, 379, 470, 557, 1111, 1476, 2030, 2214
PflFI	GACNNNGTC	1 cut(s)	2291
PflMI	CCANNNNNTGG	1 cut(s)	2140
PkrI	GCNGC	3 cut(s)	786, 2235, 2444
PleI	GAGTC	3 cut(s)	463, 1942, 2282
PpsI	GAGTC	3 cut(s)	463, 1942, 2282
Ppu21I	YACGTR	1 cut(s)	1863
PscI	ACATGT	1 cut(s)	1985
PsiI	TTATAA	1 cut(s)	713
Psp6I	CCWGG	3 cut(s)	350, 487, 604
PspGI	CCWGG	3 cut(s)	350, 487, 604
PspN4I	GGNNCC	2 cut(s)	1606, 1702
PspPI	GGNCC	3 cut(s)	1604, 1643, 1666
PstI	CTGCAG	1 cut(s)	1327
PstNI	CAGNNNCTG	1 cut(s)	871
PsuI	RGATCY	3 cut(s)	706, 1319, 1923
PsyI	GACNNNGTC	1 cut(s)	2291
PteI	GCGCGC	1 cut(s)	346
RsaI	GTAC	6 cut(s)	41, 506, 1139, 1458, 2358, 2457
RsaNI	GTAC	6 cut(s)	40, 505, 1138, 1457, 2357, 2456
RseI	CAYNNNNRTG	1 cut(s)	1038
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	9 cut(s)	360, 548, 939, 1299, 1554, 1710, 1919, 1970, 2187
SatI	GCNGC	3 cut(s)	785, 2234, 2443
Sau96I	GGNCC	3 cut(s)	1604, 1643, 1666
SchI	GAGTC	3 cut(s)	464, 1942, 2282
ScrFI	CCNGG	5 cut(s)	352, 489, 606, 1520, 1521
SduI	GDGCHC	1 cut(s)	2305
SfaNI	GCATC	7 cut(s)	82, 583, 691, 1270, 2153, 2239, 2454
SfcI	CTRYAG	3 cut(s)	1323, 1470, 1716
SfuI	TTCGAA	2 cut(s)	249, 1833
SinI	GGWCC	1 cut(s)	1643
SmaI	CCCGGG	1 cut(s)	1521
SmiMI	CAYNNNNRTG	1 cut(s)	1038
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SsiI	CCGC	6 cut(s)	71, 212, 679, 704, 992, 2440
SspI	AATATT	4 cut(s)	244, 274, 1087, 1200
SspMI	CTAG	6 cut(s)	89, 140, 446, 1152, 1670, 1908
StyD4I	CCNGG	5 cut(s)	350, 487, 604, 1518, 1519
StyI	CCWWGG	2 cut(s)	284, 516
TaaI	ACNGT	6 cut(s)	655, 800, 1063, 2138, 2163, 2404
TaiI	ACGT	5 cut(s)	547, 643, 1231, 1243, 1865
TaqI	TCGA	6 cut(s)	126, 249, 1305, 1833, 1946, 2183
TatI	WGTACW	3 cut(s)	504, 2356, 2455
TfiI	GAWTC	8 cut(s)	337, 379, 470, 557, 1111, 1476, 2030, 2214
Tru1I	TTAA	9 cut(s)	360, 548, 939, 1299, 1554, 1710, 1919, 1970, 2187
Tru9I	TTAA	9 cut(s)	360, 548, 939, 1299, 1554, 1710, 1919, 1970, 2187
TscAI	CASTG	4 cut(s)	925, 1341, 2166, 2224
TseFI	GTSAC	3 cut(s)	641, 2171, 2431
TseI	GCWGC	3 cut(s)	784, 2233, 2442
Tsp45I	GTSAC	3 cut(s)	641, 2171, 2431
TspGWI	ACGGA	2 cut(s)	509, 2463
TspMI	CCCGGG	1 cut(s)	1519
TspRI	CASTG	4 cut(s)	925, 1341, 2166, 2224
Tth111I	GACNNNGTC	1 cut(s)	2291
Van91I	CCANNNNNTGG	1 cut(s)	2140
VpaK11BI	GGWCC	1 cut(s)	1643
XagI	CCTNNNNNAGG	2 cut(s)	609, 1673
XapI	RAATTY	6 cut(s)	763, 1029, 1076, 1163, 1379, 1502
XbaI	TCTAGA	3 cut(s)	88, 139, 1151
XceI	RCATGY	6 cut(s)	794, 878, 913, 1018, 1897, 1989
XcmI	CCANNNNNNNNNTGG	2 cut(s)	689, 1617
XmaI	CCCGGG	1 cut(s)	1519
XmiI	GTMKAC	1 cut(s)	1065
XmnI	GAANNNNTTC	3 cut(s)	1076, 1199, 2403
XspI	CTAG	6 cut(s)	89, 140, 446, 1152, 1670, 1908
ZraI	GACGTC	1 cut(s)	1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.