Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Forward (+)

38430753 .. 38437452

Gene Structure 6700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2718 bp

ATGGGGGTTCCATCGTTTTTTCGTTGGTTGGTAAACAAGTATCCTAAAGTGGTGGTGAAAGCCATTGAAGTGGGAGAGGATCAGTTTCTAGATGCAAGCTTGCCAAACCCAAATGGCATAGAGTTCGATAACCTATTTCTAGACATGAATGGGATTATCCATCCCTGCTTTCACCCGGAAGAAGAAGATGATGATGGTTATGGACTTGCACCACCAAGAACTTATGAAGATGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATGGAGTTGCTCCAAGGGCTAAAATGAATCAACAGCGCGCCAGGCGTTTTAAGTCAGCAATGGACAAGAATCTTGCTGAGGCTGAAGAAGGGAAACTAAGACAGCAATTTGAAAAGGAAGGGAAAAAAATCCTACCAGAACAGGAGTCCGAAGTTTCTGATTCTAATATAATCACCCCGGAACGGATTTCATGTACAAGTTATCCAAGGCTCTTCAAAGCTACATCAATCTACGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGATGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGTATGGTCTGGATTTACTAATCCAAAACCAGCAGCGACATGCAAACAGTCAATTGACAATCTCATCTGCAATATCAGACAAAAGAACAGCGCACATGATGAAAAAGCCTTATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAGTGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGTATCATTGATGATTTCATCTTTATATGTTTCTTCGCGGGAAATGATTTTTTACCCCACATGCCAACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGATTGATATGATTCAGGTTCATGACAAGAAGTTGGGGTACATCAAACTATCTAGAGTTGAGAAATTTGTTCTCCTTATTGGAGCATTTGAAGAGAAAATATTCAAGAAAAGATCAGATATACGAGAATGTAAACTCAGACGTCTTTGCTATAACAATGATTGGATAGTGGAAGACATTGATGCTGGAAGTTCAAACTTTAATTTCGAGGCAATTGAAGGATCTGCAGTTGTTTCAGTGGATAATGTTTCATCTTCCAAAATAGTGGAAAACACAAAGGAATTCAAGCAAAAATTGAAGGCCAGCATTAGAAGAAAATCTGATCTGTTTAGGAATGGTGATTTTGGCACTGACAAAGTACGATTGGGTGCTACAGGATTCAAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCCGGGGGAGATTGAAAACAAAAGGAAGGAAGTAGTTAAAAGCTACACAGAAGGACTGCTCTGGGTTCTTTTATACTACTTTTCCGGCCCCCCATCGTGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAGCTCAGGTCAAACCACAATTTCAGAAAGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGCGCTCATGCACTTCCTAAGGATTATAGGACACTTATGATGGAAGAGTGTTCCACAATCATTGATTTTTACCCTTCTGACTTCGAAATTGACATGGATGGGAAGAGATTTACGTGGCAGGCAGAAGAAATTGACAGGAATGCTGAGAAACTTGATCAGTTATTCATGCGAAGCACCCACGGTATGGCATCACAAATTGTTTCACTGTCTAATGGTGACAATCAGTCGATCAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCGGCAGCTTGATGACAATGATGCCAAGGTCAAAGAAAGAGATGATAGCTCTGAAGAAGACTCTGTCTTATGTGCCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCGTTTACTTGATGGTGTACAACATCCTTCCAAGGGAAATGTGACCACCCGCAGCATCCAGCAAGTACAGGCAAGGTTTAGAAAACCAAATGATTTGGGAAATGCAAGTTTTCACAATGGTAAATTCACTTCAAGCTCTCCTGCCAATTCAATTCACAAATTTGCTGGTTCTGGATGGGGGTGTGGTAGAGGAACAAATCCTAGTTGTAAGTCAGGAGACCGAGTTTATGCTCCAAAAGGAATATCCAGGGATCAAAGAGTAGTGTCATCTCCTAGCTCATACTATGCCAAGGGTACCTCAGATTATAGAAAAGGCACATTACAACACGGCTTCAGGGAATTAAATATATCAGAGTCAGGCCAATGCTGGAGGCCTAATGGAAGGGGAGTTCAGTCATTGAATAATGATTTATGGCCATCTAGAAATAGTGTCTCTCAAGACACAAACTTTGCTGGTCATGGTTCACAGTCATATCATACTTGGGGCCGTGGCAGAGGGCAACACAATTTGTGGCAGCACACCTATCCATTTGCTGGTACAGGTAGAGGCCAGCAAAACCCTTGGACACACACCCGGCCTTATTTTGCTGCTAACCGTTCATCATCACATGCCGGTGGAAGAGGCAACTTTGTTCAACGTAATCATGTAGAAAGTCAGAATGGGCAGCGGTGGGCAGGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

905

Amino Acids

103.34

Weight (kDa)

8.53

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 222	2.7e-69	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	281 - 591	3.9e-117	Xrn1 helical domain
XRN_M	PF17846	591 - 689	5.8e-08	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1144
Acc65I	GGTACC	1 cut(s)	2327
AccB1I	GGYRCC	1 cut(s)	2327
AccB7I	CCANNNNNTGG	2 cut(s)	1834, 2567
AccI	GTMKAC	1 cut(s)	966
AccII	CGCG	2 cut(s)	348, 893
AciI	CCGC	4 cut(s)	643, 893, 2083, 2701
AclWI	GGATC	5 cut(s)	87, 626, 818, 1228, 2292
AcoI	YGGCCR	1 cut(s)	2447
AcsI	RAATTY	7 cut(s)	930, 977, 1064, 1280, 1403, 2156, 2192
AcuI	CTGAAG	3 cut(s)	414, 1995, 2350
AcyI	GRCGYC	1 cut(s)	1141
AfaI	GTAC	7 cut(s)	505, 1040, 1359, 2052, 2100, 2329, 2572
AfeI	AGCGCT	1 cut(s)	1654
AfiI	CCNNNNNNNGG	7 cut(s)	492, 575, 1515, 1576, 1834, 2066, 2567
AhdI	GACNNNNNGTC	1 cut(s)	1873
AjnI	CCWGG	3 cut(s)	350, 568, 2279
AloI	GAACNNNNNNTCC	2 cut(s)	2406, 2438
Alw26I	GTCTC	2 cut(s)	2244, 2470
AlwI	GGATC	5 cut(s)	87, 626, 818, 1228, 2292
AlwNI	CAGNNNCTG	1 cut(s)	772
Ama87I	CYCGRG	1 cut(s)	1420
Aor51HI	AGCGCT	1 cut(s)	1654
AoxI	GGCC	9 cut(s)	1299, 1504, 1567, 2392, 2405, 2447, 2518, 2581, 2609
ApeKI	GCWGC	6 cut(s)	685, 1927, 2085, 2548, 2621, 2698
ApoI	RAATTY	7 cut(s)	930, 977, 1064, 1280, 1403, 2156, 2192
ArsI	GACNNNNNNTTYG	2 cut(s)	2465, 2497
Asp700I	GAANNNNTTC	2 cut(s)	977, 1100
Asp718I	GGTACC	1 cut(s)	2327
AspLEI	GCGC	4 cut(s)	348, 350, 745, 1655
AspS9I	GGNCC	4 cut(s)	1505, 1544, 1567, 2518
AsuC2I	CCSGG	5 cut(s)	176, 488, 1421, 1422, 2608
AsuHPI	GGTGA	6 cut(s)	67, 164, 475, 599, 1349, 1877
AsuII	TTCGAA	2 cut(s)	249, 1734
AvaI	CYCGRG	1 cut(s)	1420
AvaII	GGWCC	1 cut(s)	1544
AxyI	CCTNAGG	1 cut(s)	1668
BaeGI	GKGCMC	1 cut(s)	1999
BalI	TGGCCA	1 cut(s)	2449
BanI	GGYRCC	1 cut(s)	2327
BarI	GAAGNNNNNNTAC	4 cut(s)	1022, 1054, 2146, 2178
BbsI	GAAGAC	3 cut(s)	226, 1179, 1986
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	6 cut(s)	697, 1939, 2097, 2560, 2608, 2710
BceAI	ACGGC	2 cut(s)	2377, 2505
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 2015, 2049
BciT130I	CCWGG	3 cut(s)	352, 570, 2281
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	1804
BcnI	CCSGG	5 cut(s)	176, 488, 1421, 1422, 2608
BcoDI	GTCTC	2 cut(s)	2244, 2470
BfaI	CTAG	7 cut(s)	89, 140, 1053, 1571, 2235, 2307, 2454
BfmI	CTRYAG	3 cut(s)	1224, 1371, 1617
BfoI	RGCGCY	1 cut(s)	1656
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	6 cut(s)	686, 1928, 2086, 2549, 2622, 2699
BlsI	GCNGC	6 cut(s)	687, 1929, 2087, 2550, 2623, 2700
Bme1390I	CCNGG	8 cut(s)	176, 352, 488, 570, 1421, 1422, 2281, 2608
Bme18I	GGWCC	1 cut(s)	1544
BmeRI	GACNNNNNGTC	1 cut(s)	1873
BmeT110I	CYCGRG	1 cut(s)	1420
BmgT120I	GGNCC	4 cut(s)	1505, 1544, 1567, 2518
BmiI	GGNNCC	5 cut(s)	9, 1507, 1603, 2329, 2519
BmrFI	CCNGG	8 cut(s)	176, 352, 488, 570, 1421, 1422, 2281, 2608
BmsI	GCATC	6 cut(s)	82, 547, 1171, 1847, 1933, 2097
BpiI	GAAGAC	3 cut(s)	226, 1179, 1986
BpmI	CTGGAG	2 cut(s)	821, 2422
Bpu10I	CCTNAGC	2 cut(s)	387, 1575
Bpu14I	TTCGAA	2 cut(s)	249, 1734
BpuEI	CTTGAG	2 cut(s)	872, 2454
BpuMI	CCSGG	5 cut(s)	176, 488, 1421, 1422, 2608
BsaAI	YACGTR	2 cut(s)	544, 1764
BsaHI	GRCGYC	1 cut(s)	1141
BsaI	GGTCTC	1 cut(s)	2244
BsaXI	ACNNNNNCTCC	2 cut(s)	2241, 2271
Bsc4I	CCNNNNNNNGG	7 cut(s)	492, 575, 1515, 1576, 1834, 2066, 2567
Bse118I	RCCGGY	1 cut(s)	2645
Bse21I	CCTNAGG	1 cut(s)	1668
Bse3DI	GCAATG	2 cut(s)	375, 646
BseBI	CCWGG	3 cut(s)	352, 570, 2281
BseGI	GGATG	5 cut(s)	160, 1753, 2056, 2088, 2213
BseLI	CCNNNNNNNGG	7 cut(s)	492, 575, 1515, 1576, 1834, 2066, 2567
BseMI	GCAATG	2 cut(s)	375, 646
BseMII	CTCAG	6 cut(s)	378, 822, 1150, 1589, 1785, 2346
BsePI	GCGCGC	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	1999
BseXI	GCAGC	6 cut(s)	697, 1939, 2097, 2560, 2608, 2710
Bsh1236I	CGCG	2 cut(s)	348, 893
BshFI	GGCC	9 cut(s)	1301, 1506, 1569, 2394, 2407, 2449, 2520, 2583, 2611
BshNI	GGYRCC	1 cut(s)	2327
BsiHKCI	CYCGRG	1 cut(s)	1420
BsiSI	CCGG	7 cut(s)	176, 488, 1421, 1503, 1924, 2608, 2646
BslI	CCNNNNNNNGG	7 cut(s)	492, 575, 1515, 1576, 1834, 2066, 2567
BsmAI	GTCTC	2 cut(s)	2244, 2470
BsmI	GAATGC	1 cut(s)	1795
BsnI	GGCC	9 cut(s)	1301, 1506, 1569, 2394, 2407, 2449, 2520, 2583, 2611
Bso31I	GGTCTC	1 cut(s)	2244
BsoBI	CYCGRG	1 cut(s)	1420
Bsp119I	TTCGAA	2 cut(s)	249, 1734
Bsp1286I	GDGCHC	1 cut(s)	1999
Bsp1407I	TGTACA	2 cut(s)	503, 2050
BspACI	CCGC	4 cut(s)	643, 893, 2083, 2701
BspANI	GGCC	9 cut(s)	1301, 1506, 1569, 2394, 2407, 2449, 2520, 2583, 2611
BspCNI	CTCAG	6 cut(s)	379, 823, 1149, 1588, 1786, 2345
BspFNI	CGCG	2 cut(s)	348, 893
BspHI	TCATGA	2 cut(s)	934, 1021
BspLI	GGNNCC	5 cut(s)	9, 1507, 1603, 2329, 2519
BspMAI	CTGCAG	1 cut(s)	1228
BspPI	GGATC	5 cut(s)	87, 626, 818, 1228, 2292
BspQI	GCTCTTC	1 cut(s)	527
BspT104I	TTCGAA	2 cut(s)	249, 1734
BspT107I	GGYRCC	1 cut(s)	2327
BspTNI	GGTCTC	1 cut(s)	2244
BsrDI	GCAATG	2 cut(s)	375, 646
BsrFI	RCCGGY	1 cut(s)	2645
BsrGI	TGTACA	2 cut(s)	503, 2050
BssAI	RCCGGY	1 cut(s)	2645
BssHII	GCGCGC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	1141
BssT1I	CCWWGG	7 cut(s)	284, 323, 515, 1947, 2064, 2322, 2594
Bst2UI	CCWGG	3 cut(s)	352, 570, 2281
Bst4CI	ACNGT	7 cut(s)	619, 701, 964, 1832, 1857, 2502, 2630
Bst6I	CTCTTC	5 cut(s)	527, 1086, 1689, 1748, 2647
BstACI	GRCGYC	1 cut(s)	1141
BstAUI	TGTACA	2 cut(s)	503, 2050
BstBAI	YACGTR	2 cut(s)	544, 1764
BstBI	TTCGAA	2 cut(s)	249, 1734
BstC8I	GCNNGC	6 cut(s)	97, 101, 348, 1303, 1770, 2585
BstDEI	CTNAG	8 cut(s)	387, 407, 831, 1136, 1575, 1668, 1794, 2332
BstDSI	CCRYGG	2 cut(s)	1828, 2521
BstENI	CCTNNNNNAGG	2 cut(s)	573, 1574
BstF5I	GGATG	5 cut(s)	160, 1753, 2056, 2088, 2213
BstFNI	CGCG	2 cut(s)	348, 893
BstH2I	RGCGCY	1 cut(s)	1656
BstHHI	GCGC	4 cut(s)	348, 350, 745, 1655
BstMAI	GTCTC	2 cut(s)	2244, 2470
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 352, 811
BstNI	CCWGG	3 cut(s)	352, 570, 2281
BstNSI	RCATGY	5 cut(s)	695, 779, 814, 919, 2645
BstSCI	CCNGG	8 cut(s)	174, 350, 486, 568, 1419, 1420, 2279, 2606
BstSFI	CTRYAG	3 cut(s)	1224, 1371, 1617
BstSLI	GKGCMC	1 cut(s)	1999
BstSNI	TACGTA	1 cut(s)	544
BstUI	CGCG	2 cut(s)	348, 893
BstV1I	GCAGC	6 cut(s)	697, 1939, 2097, 2560, 2608, 2710
BstV2I	GAAGAC	3 cut(s)	226, 1179, 1986
BstX2I	RGATCY	1 cut(s)	1220
BstXI	CCANNNNNNTGG	2 cut(s)	70, 1264
BstYI	RGATCY	1 cut(s)	1220
Bsu36I	CCTNAGG	1 cut(s)	1668
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	9 cut(s)	1301, 1506, 1569, 2394, 2407, 2449, 2520, 2583, 2611
BtgI	CCRYGG	2 cut(s)	1828, 2521
BtsCI	GGATG	5 cut(s)	160, 1753, 2056, 2088, 2213
BtsIMutI	CAGTG	5 cut(s)	826, 1242, 1347, 1853, 1918
Cac8I	GCNNGC	6 cut(s)	97, 101, 348, 1303, 1770, 2585
CaiI	CAGNNNCTG	1 cut(s)	772
CciI	TCATGA	2 cut(s)	934, 1021
CfoI	GCGC	4 cut(s)	348, 350, 745, 1655
Cfr10I	RCCGGY	1 cut(s)	2645
Cfr13I	GGNCC	4 cut(s)	1505, 1544, 1567, 2518
Cfr9I	CCCGGG	1 cut(s)	1420
Csp6I	GTAC	7 cut(s)	504, 1039, 1358, 2051, 2099, 2328, 2571
CspCI	CAANNNNNGTGG	2 cut(s)	1693, 1728
CviQI	GTAC	7 cut(s)	504, 1039, 1358, 2051, 2099, 2328, 2571
DdeI	CTNAG	8 cut(s)	387, 407, 831, 1136, 1575, 1668, 1794, 2332
DraI	TTTAAA	1 cut(s)	1612
DriI	GACNNNNNGTC	1 cut(s)	1873
EaeI	YGGCCR	1 cut(s)	2447
Eam1104I	CTCTTC	5 cut(s)	527, 1086, 1689, 1748, 2647
Eam1105I	GACNNNNNGTC	1 cut(s)	1873
EarI	CTCTTC	5 cut(s)	527, 1086, 1689, 1748, 2647
Eco105I	TACGTA	1 cut(s)	544
Eco130I	CCWWGG	7 cut(s)	284, 323, 515, 1947, 2064, 2322, 2594
Eco147I	AGGCCT	1 cut(s)	2407
Eco31I	GGTCTC	1 cut(s)	2244
Eco47I	GGWCC	1 cut(s)	1544
Eco47III	AGCGCT	1 cut(s)	1654
Eco57I	CTGAAG	3 cut(s)	414, 1995, 2350
Eco81I	CCTNAGG	1 cut(s)	1668
Eco88I	CYCGRG	1 cut(s)	1420
EcoNI	CCTNNNNNAGG	2 cut(s)	573, 1574
EcoO109I	RGGNCCY	1 cut(s)	1567
EcoRI	GAATTC	2 cut(s)	977, 1280
EcoRII	CCWGG	3 cut(s)	350, 568, 2279
EcoT14I	CCWWGG	7 cut(s)	284, 323, 515, 1947, 2064, 2322, 2594
ErhI	CCWWGG	7 cut(s)	284, 323, 515, 1947, 2064, 2322, 2594
FauI	CCCGC	3 cut(s)	650, 886, 2090
FauNDI	CATATG	1 cut(s)	2028
FbaI	TGATCA	1 cut(s)	1804
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	6 cut(s)	686, 1928, 2086, 2549, 2622, 2699
FokI	GGATG	5 cut(s)	147, 1760, 2043, 2075, 2220
Fsp4HI	GCNGC	6 cut(s)	686, 1928, 2086, 2549, 2622, 2699
FspBI	CTAG	7 cut(s)	89, 140, 1053, 1571, 2235, 2307, 2454
GlaI	GCGC	4 cut(s)	347, 349, 744, 1654
GluI	GCNGC	6 cut(s)	686, 1928, 2086, 2549, 2622, 2699
GsuI	CTGGAG	2 cut(s)	821, 2422
HaeII	RGCGCY	1 cut(s)	1656
HaeIII	GGCC	9 cut(s)	1301, 1506, 1569, 2394, 2407, 2449, 2520, 2583, 2611
HapII	CCGG	7 cut(s)	176, 488, 1421, 1503, 1924, 2608, 2646
HhaI	GCGC	4 cut(s)	348, 350, 745, 1655
Hin1I	GRCGYC	1 cut(s)	1141
Hin6I	GCGC	4 cut(s)	346, 348, 743, 1653
HinP1I	GCGC	4 cut(s)	346, 348, 743, 1653
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	9 cut(s)	337, 379, 455, 470, 1012, 1377, 1908, 1982, 2387
HpaII	CCGG	7 cut(s)	176, 488, 1421, 1503, 1924, 2608, 2646
HphI	GGTGA	6 cut(s)	67, 164, 475, 599, 1349, 1877
Hpy166II	GTNNAC	6 cut(s)	34, 967, 1133, 2039, 2051, 2498
Hpy8I	GTNNAC	6 cut(s)	34, 967, 1133, 2039, 2051, 2498
HpyCH4III	ACNGT	7 cut(s)	619, 701, 964, 1832, 1857, 2502, 2630
HpyCH4IV	ACGT	5 cut(s)	543, 604, 1141, 1763, 2671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 352, 811
HpyF3I	CTNAG	8 cut(s)	387, 407, 831, 1136, 1575, 1668, 1794, 2332
HpySE526I	ACGT	5 cut(s)	543, 604, 1141, 1763, 2671
Hsp92I	GRCGYC	1 cut(s)	1141
HspAI	GCGC	4 cut(s)	346, 348, 743, 1653
KpnI	GGTACC	1 cut(s)	2331
Ksp22I	TGATCA	1 cut(s)	1804
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	5 cut(s)	325, 802, 1082, 2269, 2712
Lsp1109I	GCAGC	6 cut(s)	697, 1939, 2097, 2560, 2608, 2710
LweI	GCATC	6 cut(s)	82, 547, 1171, 1847, 1933, 2097
MaeI	CTAG	7 cut(s)	89, 140, 1053, 1571, 2235, 2307, 2454
MaeII	ACGT	5 cut(s)	543, 604, 1141, 1763, 2671
MaeIII	GTNAC	3 cut(s)	605, 1865, 2074
MfeI	CAATTG	3 cut(s)	704, 945, 1212
MflI	RGATCY	1 cut(s)	1220
MhlI	GDGCHC	1 cut(s)	1999
MlsI	TGGCCA	1 cut(s)	2449
MluNI	TGGCCA	1 cut(s)	2449
MlyI	GAGTC	3 cut(s)	464, 1976, 2396
Mox20I	TGGCCA	1 cut(s)	2449
MroXI	GAANNNNTTC	2 cut(s)	977, 1100
MscI	TGGCCA	1 cut(s)	2449
MseI	TTAA	6 cut(s)	360, 840, 1200, 1455, 1611, 2375
MslI	CAYNNNNRTG	3 cut(s)	68, 939, 2646
Msp20I	TGGCCA	1 cut(s)	2449
MspA1I	CMGCKG	1 cut(s)	2701
MspI	CCGG	7 cut(s)	176, 488, 1421, 1503, 1924, 2608, 2646
MspR9I	CCNGG	8 cut(s)	176, 352, 488, 570, 1421, 1422, 2281, 2608
MunI	CAATTG	3 cut(s)	704, 945, 1212
Mva1269I	GAATGC	1 cut(s)	1795
MvaI	CCWGG	3 cut(s)	352, 570, 2281
MvnI	CGCG	2 cut(s)	348, 893
MwoI	GCNNNNNNNGC	3 cut(s)	326, 352, 811
NciI	CCSGG	5 cut(s)	176, 488, 1421, 1422, 2608
NdeI	CATATG	1 cut(s)	2028
NlaIV	GGNNCC	5 cut(s)	9, 1507, 1603, 2329, 2519
NmuCI	GTSAC	3 cut(s)	605, 1865, 2074
NspI	RCATGY	5 cut(s)	695, 779, 814, 919, 2645
NspV	TTCGAA	2 cut(s)	249, 1734
PagI	TCATGA	2 cut(s)	934, 1021
PauI	GCGCGC	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	2407
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PctI	GAATGC	1 cut(s)	1795
PdmI	GAANNNNTTC	2 cut(s)	977, 1100
PfeI	GAWTC	6 cut(s)	337, 379, 470, 1012, 1377, 1908
PflFI	GACNNNGTC	1 cut(s)	1985
PflMI	CCANNNNNTGG	2 cut(s)	1834, 2567
PkrI	GCNGC	6 cut(s)	687, 1929, 2087, 2550, 2623, 2700
PleI	GAGTC	3 cut(s)	463, 1976, 2395
PpsI	GAGTC	3 cut(s)	463, 1976, 2395
Ppu21I	YACGTR	2 cut(s)	544, 1764
Psp6I	CCWGG	3 cut(s)	350, 568, 2279
PspGI	CCWGG	3 cut(s)	350, 568, 2279
PspN4I	GGNNCC	5 cut(s)	9, 1507, 1603, 2329, 2519
PspPI	GGNCC	4 cut(s)	1505, 1544, 1567, 2518
PstI	CTGCAG	1 cut(s)	1228
PstNI	CAGNNNCTG	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	1220
PsyI	GACNNNGTC	1 cut(s)	1985
PteI	GCGCGC	1 cut(s)	346
RsaI	GTAC	7 cut(s)	505, 1040, 1359, 2052, 2100, 2329, 2572
RsaNI	GTAC	7 cut(s)	504, 1039, 1358, 2051, 2099, 2328, 2571
RseI	CAYNNNNRTG	3 cut(s)	68, 939, 2646
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	6 cut(s)	360, 840, 1200, 1455, 1611, 2375
SatI	GCNGC	6 cut(s)	686, 1928, 2086, 2549, 2622, 2699
Sau96I	GGNCC	4 cut(s)	1505, 1544, 1567, 2518
SchI	GAGTC	3 cut(s)	464, 1976, 2396
ScrFI	CCNGG	8 cut(s)	176, 352, 488, 570, 1421, 1422, 2281, 2608
SduI	GDGCHC	1 cut(s)	1999
SfaNI	GCATC	6 cut(s)	82, 547, 1171, 1847, 1933, 2097
SfcI	CTRYAG	3 cut(s)	1224, 1371, 1617
SfuI	TTCGAA	2 cut(s)	249, 1734
SinI	GGWCC	1 cut(s)	1544
SmaI	CCCGGG	1 cut(s)	1422
SmiMI	CAYNNNNRTG	3 cut(s)	68, 939, 2646
SmlI	CTYRAG	2 cut(s)	851, 2469
SmoI	CTYRAG	2 cut(s)	851, 2469
SnaBI	TACGTA	1 cut(s)	544
SseBI	AGGCCT	1 cut(s)	2407
SsiI	CCGC	4 cut(s)	643, 893, 2083, 2701
SspI	AATATT	4 cut(s)	244, 274, 988, 1101
SspMI	CTAG	7 cut(s)	89, 140, 1053, 1571, 2235, 2307, 2454
StuI	AGGCCT	1 cut(s)	2407
StyD4I	CCNGG	8 cut(s)	174, 350, 486, 568, 1419, 1420, 2279, 2606
StyI	CCWWGG	7 cut(s)	284, 323, 515, 1947, 2064, 2322, 2594
TaaI	ACNGT	7 cut(s)	619, 701, 964, 1832, 1857, 2502, 2630
TaiI	ACGT	5 cut(s)	546, 607, 1144, 1766, 2674
TaqI	TCGA	5 cut(s)	126, 249, 1206, 1734, 1877
TaqII	GACCGA	1 cut(s)	2268
TatI	WGTACW	3 cut(s)	503, 2050, 2098
TfiI	GAWTC	6 cut(s)	337, 379, 470, 1012, 1377, 1908
Tru1I	TTAA	6 cut(s)	360, 840, 1200, 1455, 1611, 2375
Tru9I	TTAA	6 cut(s)	360, 840, 1200, 1455, 1611, 2375
TscAI	CASTG	5 cut(s)	826, 1242, 1354, 1860, 1918
TseFI	GTSAC	3 cut(s)	605, 1865, 2074
TseI	GCWGC	6 cut(s)	685, 1927, 2085, 2548, 2621, 2698
Tsp45I	GTSAC	3 cut(s)	605, 1865, 2074
TspGWI	ACGGA	1 cut(s)	508
TspMI	CCCGGG	1 cut(s)	1420
TspRI	CASTG	5 cut(s)	826, 1242, 1354, 1860, 1918
Tth111I	GACNNNGTC	1 cut(s)	1985
Van91I	CCANNNNNTGG	2 cut(s)	1834, 2567
VpaK11BI	GGWCC	1 cut(s)	1544
XagI	CCTNNNNNAGG	2 cut(s)	573, 1574
XapI	RAATTY	7 cut(s)	930, 977, 1064, 1280, 1403, 2156, 2192
XbaI	TCTAGA	4 cut(s)	88, 139, 1052, 2453
XceI	RCATGY	5 cut(s)	695, 779, 814, 919, 2645
XcmI	CCANNNNNNNNNTGG	2 cut(s)	653, 1518
XmaI	CCCGGG	1 cut(s)	1420
XmiI	GTMKAC	1 cut(s)	966
XmnI	GAANNNNTTC	2 cut(s)	977, 1100
XspI	CTAG	7 cut(s)	89, 140, 1053, 1571, 2235, 2307, 2454
ZraI	GACGTC	1 cut(s)	1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.