Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

45491587 .. 45517095

Gene Structure 25509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGAACCCCCACAGTTCGGCTTTTGGTCTCCCCTATGAAAAGAAAGGGGGGGGGGTAGAAGAAGGGAGTTTGCAACTTGCACCACCAAGAACTTATGAAGACGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATAGAGTTGCTCCGAGGGCTAAAATGAATCAACAGCGTGCCAGGCGTTTTAAGTTGGCAATGGACAAGAATCTTGCTGAGGCCGAAGAAGAGAAACTAAGACAGCAATTTGAAAAGGAAGGGAAAAAAATCCTCCTAGAACAGGAATCCGAAGTTTCTGATTCTAATATAATCACCTCTGGAACGGATTTCATGTACAAGTTATCCAAGGCTCTTCGAAGCTACATCAATCTACGTTTAAGCCAAGATTCAGGCTGGAGGGACATCAAGGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGTTGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCAGCCATTGCTTGTATGGTCTGGATGCGGATCTTATAATGTTGTCTGTGGCAACACATGAAGTTCACCTTTCCATACTAAGAGAGAGGTTGAATTTGCAAACCTTTCAAGATTTAGTCGATTTACTAATCCAAAACCAGCAGCGACATGCAAACAGTCAATTGACAATCTCATCTGCAATATCAGACAAAAGAACAGCGTACATGATGAAAAAGCGTTATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAATGATCCTCCTGAGAACTTTAAGTTTCATCTTGAGCGTGTCATTGATGATTTCATCTTTATATGTTTCTTCACCGGAAATGATTTTTTTACCCCACATGGTGCAATTGATTTGCTTATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCGGGTTAATGACAAGAATTTGGGGTACATCAAACTATCTAGAGTTGAGAAATTTGTTCTCCTTATTGGAGCATTTGAAGAGAAAATATTCAAGAAAAGATCAGATATACGAGAACGTAAACTCAGACGTCTTTGCTATAACAATGATACGATAGAGGAAGACATTGATGCTGGAAGTTCAAACTTTAATTTTGAGGCAATTGAAGGATCTGCAGTTGTTTCAGCAGATAATGTTTCACATTCTGAAATAGTGGGAAACATGAAGGAGTTCAAGCAAAAATTGAAGGCCAGCATTAGAAGAAAATCTGATCTGTTTAGGAATGGTGATTTTGGCACTGACAAAGTACGATTGAGTGCTACAGGATTCGAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCTGGGGGAGATTGAAAGCAAAAGGAAGGAAGTAGTTAAAAGCTACACAGAAGGACTTCTCTGGGTTCTTTTATACTACTTTTCCGGTTTTATATATCCTTTTCATTATGGACCATTTACCTCTGATATGAAGGGCCTAGCTCAGGTCAAACCACAATTTCAGAAAGGCTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGCGCTCATGCACTTCCTAAGGATTATCAGACACTTATGACGGAAGAGTGTTCCACAATCATTGATTTTTACCCTTCTGATTTCGAAACTGACATGGATGGGAAGAGATTTACGTGGCAGGGTATCTGCAAACTTCCCTTTACAGAAGAATCCCGACTTCTACATGAGACCAGAAAATTGGAAAAGGAACTAATGGCAGAAGAAATTGACAGGAATACTGAGAAACTTGATCAGGTATTCGTGCGAAGCATCCACAGTATGGCATCACAAATTGTTTCATGGTCTAATGGTGACAATCAGTCGATCAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCGTCAGCTTGATGACAATGATGCCAAGGTTAAAGAAAGCAATGATAGCTCTGAAGAAGACTCTCTTATTTGTTTTTTGGATTTTTGGGATTATTTTTTAATTTCATCATGTTGCAGATGTGCCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCGTTTACTTGATGGTGTACAACATCCTACCAAGACAGTCAATGAACATGAGCTTATGGAAACAGTTCTGTGGCATGAATGCCAGGGAAATGTGCCCGCCCGCAGCATCCAGCAAGTTCAGGCAAGGTTTAGAAAACCAAATGATTTGGGAAATGCAAGTTTTCACAATGGTAAATTCACTTCAAGCTCTCCTACCAATTCAATTCACAAGTTTGCTGGTTCTGGATGGGGCTGTGGTAGAGGAGCAAATGGTAGTTCTAATTCAGGAGACCGACTTTATGCCCCAAAAGGAATATCCAGTGATCAAAGAGGTACCTCAGATTATAGAAAAGGCACATTACAACACGACTTCAGGGAATTAAATATATCAGAGTCAGGCCAATGCTGGAGGCCTAATGGAAGGGGAGTTCAGTCATTGAATAATGATTTATGGCCATCTAGAATTAGTGTCTCTCAGGACACAAACTTTGCTGGTCATGGTTCACAGTCCTTTCATACTTGGGACCGTGGCAGAGGGCAACACAATTCGTGGCAGCACACCTATCCATTTTGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

893

Amino Acids

102.66

Weight (kDa)

6.72

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	27 - 211	1.5e-74	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	282 - 724	3.3e-118	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AatII	GACGTC	2 cut(s)	105, 1126
Acc65I	GGTACC	1 cut(s)	2435
AccB1I	GGYRCC	1 cut(s)	2435
AccB7I	CCANNNNNTGG	1 cut(s)	1876
AccI	GTMKAC	1 cut(s)	948
AciI	CCGC	3 cut(s)	575, 2220, 2224
AclWI	GGATC	4 cut(s)	533, 585, 821, 1210
AcoI	YGGCCR	1 cut(s)	2555
AcsI	RAATTY	6 cut(s)	640, 959, 1012, 1046, 1385, 2297
AcuI	CTGAAG	2 cut(s)	2037, 2458
AcyI	GRCGYC	2 cut(s)	102, 1123
AdeI	CACNNNGTG	1 cut(s)	923
AfaI	GTAC	6 cut(s)	377, 749, 1022, 1341, 2142, 2437
AfeI	AGCGCT	1 cut(s)	1621
AfiI	CCNNNNNNNGG	5 cut(s)	16, 322, 482, 1543, 1876
AhdI	GACNNNNNGTC	1 cut(s)	1915
AjnI	CCWGG	4 cut(s)	221, 475, 1401, 2205
AloI	GAACNNNNNNTCC	2 cut(s)	2514, 2546
Alw26I	GTCTC	4 cut(s)	32, 1778, 2385, 2578
AlwI	GGATC	4 cut(s)	533, 585, 821, 1210
AlwNI	CAGNNNCTG	1 cut(s)	775
Aor51HI	AGCGCT	1 cut(s)	1621
AoxI	GGCC	6 cut(s)	261, 1281, 1534, 2500, 2513, 2555
ApeKI	GCWGC	4 cut(s)	688, 2226, 2656, 2676
ApoI	RAATTY	6 cut(s)	640, 959, 1012, 1046, 1385, 2297
ArsI	GACNNNNNNTTYG	2 cut(s)	2573, 2605
Asp700I	GAANNNNTTC	5 cut(s)	959, 1082, 1262, 1455, 2187
Asp718I	GGTACC	1 cut(s)	2435
AspLEI	GCGC	1 cut(s)	1622
AspS9I	GGNCC	3 cut(s)	1511, 1534, 2626
AsuHPI	GGTGA	6 cut(s)	346, 506, 605, 886, 1331, 1919
AsuII	TTCGAA	4 cut(s)	120, 397, 1362, 1701
AvaII	GGWCC	2 cut(s)	1511, 2626
AxyI	CCTNAGG	1 cut(s)	1635
BaeGI	GKGCMC	2 cut(s)	2089, 2220
BalI	TGGCCA	1 cut(s)	2557
BanI	GGYRCC	1 cut(s)	2435
BarI	GAAGNNNNNNTAC	2 cut(s)	2287, 2319
BbsI	GAAGAC	4 cut(s)	97, 105, 1161, 2028
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	4 cut(s)	700, 2238, 2663, 2668
BccI	CCATC	4 cut(s)	1709, 2129, 2343, 2566
BcgI	CGANNNNNNTGC	2 cut(s)	2105, 2139
BciT130I	CCWGG	4 cut(s)	223, 477, 1403, 2207
BclI	TGATCA	2 cut(s)	1846, 2425
BcoDI	GTCTC	4 cut(s)	32, 1778, 2385, 2578
BfaI	CTAG	4 cut(s)	317, 1035, 1538, 2562
BfmI	CTRYAG	3 cut(s)	1206, 1353, 1584
BfoI	RGCGCY	1 cut(s)	1623
BisI	GCNGC	4 cut(s)	689, 2227, 2657, 2677
BlsI	GCNGC	4 cut(s)	690, 2228, 2658, 2678
Bme1390I	CCNGG	4 cut(s)	223, 477, 1403, 2207
Bme18I	GGWCC	2 cut(s)	1511, 2626
BmeRI	GACNNNNNGTC	1 cut(s)	1915
BmgT120I	GGNCC	3 cut(s)	1511, 1534, 2626
BmiI	GGNNCC	3 cut(s)	1570, 2437, 2627
BmrFI	CCNGG	4 cut(s)	223, 477, 1403, 2207
BmsI	GCATC	7 cut(s)	454, 562, 1153, 1875, 1889, 1975, 2238
BpiI	GAAGAC	4 cut(s)	97, 105, 1161, 2028
BpmI	CTGGAG	3 cut(s)	457, 824, 2530
Bpu10I	CCTNAGC	2 cut(s)	258, 1542
Bpu14I	TTCGAA	4 cut(s)	120, 397, 1362, 1701
BpuEI	CTTGAG	1 cut(s)	875
BsaAI	YACGTR	1 cut(s)	1731
BsaBI	GATNNNNATC	1 cut(s)	576
BsaHI	GRCGYC	2 cut(s)	102, 1123
BsaI	GGTCTC	3 cut(s)	32, 1778, 2385
BsaJI	CCNNGG	8 cut(s)	155, 194, 387, 476, 1402, 1989, 2206, 2629
BsaWI	WCCGGW	2 cut(s)	896, 1484
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 322, 482, 1543, 1876
Bse1I	ACTGG	1 cut(s)	2421
Bse21I	CCTNAGG	1 cut(s)	1635
Bse3DI	GCAATG	3 cut(s)	246, 553, 2011
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	4 cut(s)	223, 477, 1403, 2207
BseDI	CCNNGG	8 cut(s)	155, 194, 387, 476, 1402, 1989, 2206, 2629
BseGI	GGATG	6 cut(s)	577, 1720, 1866, 2146, 2229, 2354
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	5 cut(s)	16, 322, 482, 1543, 1876
BseMI	GCAATG	3 cut(s)	246, 553, 2011
BseMII	CTCAG	7 cut(s)	249, 825, 1132, 1556, 1827, 2454, 2591
BseNI	ACTGG	1 cut(s)	2421
BseRI	GAGGAG	1 cut(s)	2379
BseSI	GKGCMC	2 cut(s)	2089, 2220
BseXI	GCAGC	4 cut(s)	700, 2238, 2663, 2668
BshFI	GGCC	6 cut(s)	263, 1283, 1536, 2502, 2515, 2557
BshNI	GGYRCC	1 cut(s)	2435
BsiSI	CCGG	2 cut(s)	897, 1485
BslFI	GGGAC	2 cut(s)	455, 2639
BslI	CCNNNNNNNGG	5 cut(s)	16, 322, 482, 1543, 1876
BsmAI	GTCTC	4 cut(s)	32, 1778, 2385, 2578
BsmFI	GGGAC	2 cut(s)	455, 2639
BsmI	GAATGC	1 cut(s)	2207
BsnI	GGCC	6 cut(s)	263, 1283, 1536, 2502, 2515, 2557
Bso31I	GGTCTC	3 cut(s)	32, 1778, 2385
Bsp119I	TTCGAA	4 cut(s)	120, 397, 1362, 1701
Bsp1286I	GDGCHC	2 cut(s)	2089, 2220
Bsp1407I	TGTACA	2 cut(s)	375, 2140
BspACI	CCGC	3 cut(s)	575, 2220, 2224
BspANI	GGCC	6 cut(s)	263, 1283, 1536, 2502, 2515, 2557
BspCNI	CTCAG	7 cut(s)	250, 826, 1131, 1555, 1828, 2453, 2590
BspLI	GGNNCC	3 cut(s)	1570, 2437, 2627
BspMAI	CTGCAG	1 cut(s)	1210
BspPI	GGATC	4 cut(s)	533, 585, 821, 1210
BspQI	GCTCTTC	1 cut(s)	399
BspT104I	TTCGAA	4 cut(s)	120, 397, 1362, 1701
BspT107I	GGYRCC	1 cut(s)	2435
BspTNI	GGTCTC	3 cut(s)	32, 1778, 2385
BsrDI	GCAATG	3 cut(s)	246, 553, 2011
BsrGI	TGTACA	2 cut(s)	375, 2140
BsrI	ACTGG	1 cut(s)	2421
BssECI	CCNNGG	8 cut(s)	155, 194, 387, 476, 1402, 1989, 2206, 2629
BssNI	GRCGYC	2 cut(s)	102, 1123
BssT1I	CCWWGG	3 cut(s)	155, 387, 1989
Bst2UI	CCWGG	4 cut(s)	223, 477, 1403, 2207
Bst4CI	ACNGT	9 cut(s)	14, 526, 704, 946, 1874, 2161, 2188, 2610, 2630
Bst6I	CTCTTC	5 cut(s)	264, 399, 1068, 1656, 1715
BstACI	GRCGYC	2 cut(s)	102, 1123
BstAUI	TGTACA	2 cut(s)	375, 2140
BstBAI	YACGTR	1 cut(s)	1731
BstBI	TTCGAA	4 cut(s)	120, 397, 1362, 1701
BstC8I	GCNNGC	4 cut(s)	219, 1285, 2220, 2224
BstDSI	CCRYGG	1 cut(s)	2629
BstENI	CCTNNNNNAGG	3 cut(s)	320, 480, 1541
BstF5I	GGATG	6 cut(s)	577, 1720, 1866, 2146, 2229, 2354
BstH2I	RGCGCY	1 cut(s)	1623
BstHHI	GCGC	1 cut(s)	1622
BstMAI	GTCTC	4 cut(s)	32, 1778, 2385, 2578
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 223, 814, 2010
BstNI	CCWGG	4 cut(s)	223, 477, 1403, 2207
BstNSI	RCATGY	3 cut(s)	698, 782, 817
BstSCI	CCNGG	4 cut(s)	221, 475, 1401, 2205
BstSFI	CTRYAG	3 cut(s)	1206, 1353, 1584
BstSLI	GKGCMC	2 cut(s)	2089, 2220
BstV1I	GCAGC	4 cut(s)	700, 2238, 2663, 2668
BstV2I	GAAGAC	4 cut(s)	97, 105, 1161, 2028
BstX2I	RGATCY	2 cut(s)	577, 1202
BstXI	CCANNNNNNTGG	1 cut(s)	1795
BstYI	RGATCY	2 cut(s)	577, 1202
Bsu36I	CCTNAGG	1 cut(s)	1635
BsuRI	GGCC	6 cut(s)	263, 1283, 1536, 2502, 2515, 2557
BtgI	CCRYGG	1 cut(s)	2629
BtsCI	GGATG	6 cut(s)	577, 1720, 1866, 2146, 2229, 2354
BtsIMutI	CAGTG	3 cut(s)	1329, 1960, 2428
Cac8I	GCNNGC	4 cut(s)	219, 1285, 2220, 2224
CaiI	CAGNNNCTG	1 cut(s)	775
CfoI	GCGC	1 cut(s)	1622
Cfr13I	GGNCC	3 cut(s)	1511, 1534, 2626
Csp6I	GTAC	6 cut(s)	376, 748, 1021, 1340, 2141, 2436
CspCI	CAANNNNNGTGG	2 cut(s)	1660, 1695
CviQI	GTAC	6 cut(s)	376, 748, 1021, 1340, 2141, 2436
DraI	TTTAAA	1 cut(s)	1579
DraIII	CACNNNGTG	1 cut(s)	923
DriI	GACNNNNNGTC	1 cut(s)	1915
EaeI	YGGCCR	1 cut(s)	2555
Eam1104I	CTCTTC	5 cut(s)	264, 399, 1068, 1656, 1715
Eam1105I	GACNNNNNGTC	1 cut(s)	1915
EarI	CTCTTC	5 cut(s)	264, 399, 1068, 1656, 1715
Eco130I	CCWWGG	3 cut(s)	155, 387, 1989
Eco147I	AGGCCT	1 cut(s)	2515
Eco31I	GGTCTC	3 cut(s)	32, 1778, 2385
Eco47I	GGWCC	2 cut(s)	1511, 2626
Eco47III	AGCGCT	1 cut(s)	1621
Eco57I	CTGAAG	2 cut(s)	2037, 2458
Eco81I	CCTNAGG	1 cut(s)	1635
EcoNI	CCTNNNNNAGG	3 cut(s)	320, 480, 1541
EcoO109I	RGGNCCY	1 cut(s)	1534
EcoRI	GAATTC	1 cut(s)	959
EcoRII	CCWGG	4 cut(s)	221, 475, 1401, 2205
EcoT14I	CCWWGG	3 cut(s)	155, 387, 1989
ErhI	CCWWGG	3 cut(s)	155, 387, 1989
FalI	AAGNNNNNCTT	4 cut(s)	600, 632, 2013, 2045
FaqI	GGGAC	2 cut(s)	455, 2639
FauI	CCCGC	2 cut(s)	2227, 2231
FauNDI	CATATG	1 cut(s)	2118
FbaI	TGATCA	2 cut(s)	1846, 2425
FblI	GTMKAC	1 cut(s)	948
Fnu4HI	GCNGC	4 cut(s)	689, 2227, 2657, 2677
FokI	GGATG	6 cut(s)	584, 1727, 1853, 2133, 2216, 2361
Fsp4HI	GCNGC	4 cut(s)	689, 2227, 2657, 2677
FspBI	CTAG	4 cut(s)	317, 1035, 1538, 2562
GlaI	GCGC	1 cut(s)	1621
GluI	GCNGC	4 cut(s)	689, 2227, 2657, 2677
GsuI	CTGGAG	3 cut(s)	457, 824, 2530
HaeII	RGCGCY	1 cut(s)	1623
HaeIII	GGCC	6 cut(s)	263, 1283, 1536, 2502, 2515, 2557
HapII	CCGG	2 cut(s)	897, 1485
HhaI	GCGC	1 cut(s)	1622
Hin1I	GRCGYC	2 cut(s)	102, 1123
Hin6I	GCGC	1 cut(s)	1620
HinP1I	GCGC	1 cut(s)	1620
HpaII	CCGG	2 cut(s)	897, 1485
HphI	GGTGA	6 cut(s)	346, 506, 605, 886, 1331, 1919
Hpy166II	GTNNAC	6 cut(s)	613, 949, 1115, 2129, 2141, 2606
Hpy8I	GTNNAC	6 cut(s)	613, 949, 1115, 2129, 2141, 2606
HpyCH4III	ACNGT	9 cut(s)	14, 526, 704, 946, 1874, 2161, 2188, 2610, 2630
HpyCH4IV	ACGT	6 cut(s)	102, 415, 511, 1111, 1123, 1730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 223, 814, 2010
HpySE526I	ACGT	6 cut(s)	102, 415, 511, 1111, 1123, 1730
Hsp92I	GRCGYC	2 cut(s)	102, 1123
HspAI	GCGC	1 cut(s)	1620
KpnI	GGTACC	1 cut(s)	2439
Ksp22I	TGATCA	2 cut(s)	1846, 2425
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	5 cut(s)	196, 805, 1064, 1574, 2366
Lsp1109I	GCAGC	4 cut(s)	700, 2238, 2663, 2668
LweI	GCATC	7 cut(s)	454, 562, 1153, 1875, 1889, 1975, 2238
MaeI	CTAG	4 cut(s)	317, 1035, 1538, 2562
MaeII	ACGT	6 cut(s)	102, 415, 511, 1111, 1123, 1730
MaeIII	GTNAC	2 cut(s)	512, 1907
MfeI	CAATTG	3 cut(s)	707, 927, 1194
MflI	RGATCY	2 cut(s)	577, 1202
MhlI	GDGCHC	2 cut(s)	2089, 2220
MlsI	TGGCCA	1 cut(s)	2557
MluNI	TGGCCA	1 cut(s)	2557
MlyI	GAGTC	2 cut(s)	2018, 2504
Mox20I	TGGCCA	1 cut(s)	2557
MroXI	GAANNNNTTC	5 cut(s)	959, 1082, 1262, 1455, 2187
MscI	TGGCCA	1 cut(s)	2557
Msp20I	TGGCCA	1 cut(s)	2557
MspI	CCGG	2 cut(s)	897, 1485
MspR9I	CCNGG	4 cut(s)	223, 477, 1403, 2207
MunI	CAATTG	3 cut(s)	707, 927, 1194
Mva1269I	GAATGC	1 cut(s)	2207
MvaI	CCWGG	4 cut(s)	223, 477, 1403, 2207
MwoI	GCNNNNNNNGC	4 cut(s)	197, 223, 814, 2010
NdeI	CATATG	1 cut(s)	2118
NlaIV	GGNNCC	3 cut(s)	1570, 2437, 2627
NmuCI	GTSAC	2 cut(s)	512, 1907
NspI	RCATGY	3 cut(s)	698, 782, 817
NspV	TTCGAA	4 cut(s)	120, 397, 1362, 1701
PceI	AGGCCT	1 cut(s)	2515
PciSI	GCTCTTC	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	517
PctI	GAATGC	1 cut(s)	2207
PdmI	GAANNNNTTC	5 cut(s)	959, 1082, 1262, 1455, 2187
PfeI	GAWTC	9 cut(s)	208, 250, 326, 341, 428, 994, 1359, 1766, 1950
PflMI	CCANNNNNTGG	1 cut(s)	1876
PkrI	GCNGC	4 cut(s)	690, 2228, 2658, 2678
PleI	GAGTC	2 cut(s)	2018, 2503
PpsI	GAGTC	2 cut(s)	2018, 2503
Ppu21I	YACGTR	1 cut(s)	1731
PsiI	TTATAA	1 cut(s)	584
Psp6I	CCWGG	4 cut(s)	221, 475, 1401, 2205
PspGI	CCWGG	4 cut(s)	221, 475, 1401, 2205
PspN4I	GGNNCC	3 cut(s)	1570, 2437, 2627
PspPI	GGNCC	3 cut(s)	1511, 1534, 2626
PstI	CTGCAG	1 cut(s)	1210
PstNI	CAGNNNCTG	1 cut(s)	775
PsuI	RGATCY	2 cut(s)	577, 1202
RsaI	GTAC	6 cut(s)	377, 749, 1022, 1341, 2142, 2437
RsaNI	GTAC	6 cut(s)	376, 748, 1021, 1340, 2141, 2436
SapI	GCTCTTC	1 cut(s)	399
SatI	GCNGC	4 cut(s)	689, 2227, 2657, 2677
Sau96I	GGNCC	3 cut(s)	1511, 1534, 2626
SchI	GAGTC	2 cut(s)	2018, 2504
ScrFI	CCNGG	4 cut(s)	223, 477, 1403, 2207
SduI	GDGCHC	2 cut(s)	2089, 2220
SfaNI	GCATC	7 cut(s)	454, 562, 1153, 1875, 1889, 1975, 2238
SfcI	CTRYAG	3 cut(s)	1206, 1353, 1584
SfuI	TTCGAA	4 cut(s)	120, 397, 1362, 1701
SinI	GGWCC	2 cut(s)	1511, 2626
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
SseBI	AGGCCT	1 cut(s)	2515
SsiI	CCGC	3 cut(s)	575, 2220, 2224
SspI	AATATT	4 cut(s)	115, 145, 970, 1083
SspMI	CTAG	4 cut(s)	317, 1035, 1538, 2562
StuI	AGGCCT	1 cut(s)	2515
StyD4I	CCNGG	4 cut(s)	221, 475, 1401, 2205
StyI	CCWWGG	3 cut(s)	155, 387, 1989
TaaI	ACNGT	9 cut(s)	14, 526, 704, 946, 1874, 2161, 2188, 2610, 2630
TaiI	ACGT	6 cut(s)	105, 418, 514, 1114, 1126, 1733
TaqI	TCGA	6 cut(s)	120, 397, 666, 1362, 1701, 1919
TaqII	GACCGA	1 cut(s)	2409
TatI	WGTACW	2 cut(s)	375, 2140
TfiI	GAWTC	9 cut(s)	208, 250, 326, 341, 428, 994, 1359, 1766, 1950
TscAI	CASTG	3 cut(s)	1336, 1960, 2428
TseFI	GTSAC	2 cut(s)	512, 1907
TseI	GCWGC	4 cut(s)	688, 2226, 2656, 2676
Tsp45I	GTSAC	2 cut(s)	512, 1907
TspGWI	ACGGA	3 cut(s)	380, 1673, 1955
TspRI	CASTG	3 cut(s)	1336, 1960, 2428
Van91I	CCANNNNNTGG	1 cut(s)	1876
VpaK11BI	GGWCC	2 cut(s)	1511, 2626
XagI	CCTNNNNNAGG	3 cut(s)	320, 480, 1541
XapI	RAATTY	6 cut(s)	640, 959, 1012, 1046, 1385, 2297
XbaI	TCTAGA	2 cut(s)	1034, 2561
XceI	RCATGY	3 cut(s)	698, 782, 817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	948
XmnI	GAANNNNTTC	5 cut(s)	959, 1082, 1262, 1455, 2187
XspI	CTAG	4 cut(s)	317, 1035, 1538, 2562
ZraI	GACGTC	2 cut(s)	103, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.