Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Forward (+)

26400494 .. 26406906

Gene Structure 6413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2844 bp

ATGGGGGTTCCATCTTTTTTTCGTTGGTTGGTAAACAAGTACCCTAAAGTGGTGGTGAAAGCCATTGAAGCGGGAGGGGATCAGTTTCTAGATGCAAGCTTGCCAAACCCAAACGGCATAGAGTTCGATAACCTGTTTCTAGACATGAATGGGATTATCCATCCCTGCTTTCACCCGGAAGAAGACGATGATGATGGTTATGGACTAGCACCACCAAGAACTTATGAAGATGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATGGAGTTGCTCCGAGGGCTAAAATGAATCAACAGCGCGCCAGGCGTTTTAAGTCGGCAATGGACAAGAATCTTGCTGTGGGTGAGGCTGAAGGAGAGAAACTAAGACAGCAATTTGAAAAGGAAGGGAAAAAAATCCTACTAGAACAGGAGTCCGAAGTTTCTGATTCTAATATAATCACCCCAGGAACAGATTTCATGTACAAGTTATCCAAGGCTCTTCATAGCTACATCAATCTACGTTTAAGCCAAGATTCAGGCTGGAGGGACATCAAGGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGATGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGCATGGTCTGGATGCAGATCTTATAATGTTATCTTTGGCAACACATGAAGTTCACTTTTCCATACTAAGAGAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAATGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGTATAATTGATGATTTCATCTTTATATGTTTCTTCGCGGGAAATGATTTTTTACCCCACATGCCGACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCAGGTTCATGACAAGAAGTTGGGGTACATCAAACTATCTAGAGTTGAGAAATTTGTTCTCCTTATTGGAGCATTTGAAGAGAAAATATTCAAGAAAAGATCAGATATACGAGAGCGTAAACTCAGACGTCTTTGCTATAACAATGATTCGATAGAGGAAGACATTGATGCTGGAAGTTCAAACTTTAATTTTGAGGCAATTGAAGGATCTGCAGTTGTTTCAGCTGATAACGTTTCATCTTCCGAAATAGTGGAAAACACGAAGGAATTCAAGCAAAAATTGAAGGCCAGCATTAGAAGAAAATCTGATCTGTTTAGGAATGGTAAAATCACCACTGACAAAGTACGATTGGGTGCTACAGGATTCAAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCCGGGGGAGATTGAAAGCAAAAGGAAGGAAGTAGTCAAAAGCTACACAGAAGGACTGCTCTGGGTTCTTTTATACTACTTTTCCGGTCCCCCATCGTGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAGCCCAGGTCAAACCACAATTTCAGAAAGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGCGCTCATGCACTTCCTAAGGATTATCGGACACTTATGACGGAAGAGTGTTCCACAATCATTGATTTTTACCCTTCTGACTTCGAAATTGACATGGATGGGAAGAGATTTACGTGGCAGGGTATCTGCAAACTTCCCTTTGTGGAAGAATCCCGACTTCTACAGGAGACCAGAAAATTGGAAAAGGAACTAATGGCAGAAGAAATTGACAGGAATGCTGAGAAACTTGATCAGTTATTCATGCGATGCACCCACGGTATGGCATCACAAATTGTTTCACTGTCTAATGGTGACAATCAGTCGATCAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCTTCAGCTTGATGACAATGATGTCAATGTCAAAGAAAGCGATGATAGCTCTGAAGAAGACTCTGTCTTATGTGCCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCATTTACTTGATGGTGTACAACATCCTACCAAGACAATCAATGAACAAGAGCTTATGGAAACAATTCTATGGCATGAATGCCAGGGAAATGTGCCCACCCTCAGCATCCAGCAAGTTCAGGAAAGGTTTAGAAAACCAAATGATTTGGGAAATGCAAGTTTTCACAATGGTAAATTCACGTCAAGCTATCCTGCCAATTCAGTTCACAAATTTGCTGGTTCTGGATGGGGCTGTGGTAGAGGAGCAAATGGTAGTTCTAATTCAGGGGACCGAGTTTATGCTCCAAAAGGAATATCCAGTGGTCAAAGAGTAGTGTCATCTCCTAGATCATATTATTCCAAGGGTACCTCAGATTACAGAAAAGGCACATTACAACACGGCTTCAGGGAATTAAATATATCAGAGTCAGGCCAATGCTGGAGGCCTAATGGAAGGGGAGTTCAGTCATTGAATAATGATTTATGGCCATCTAGAAATAGTATCTCTCAAGACAGAAACTTTGCTGGTCATGGTTCACAGTCCTATCATACTTGGGGCCGTGGCCGAGGGCAACACAATTCGTGGCAGCACTCCTATCCATTTGCTGGTACAGGTAGAGGCCAGCAAGACCCTTGGACACACACCCGGCCTCATTTTGCTGCTAACCGTTTATCATCACATGCCGGTGGAAGAGGAAACTTTGTTCAACGTGGTCATGTAGAAAGTCAGAATGGGCAGTGGTGGGTAGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

947

Amino Acids

108.02

Weight (kDa)

6.42

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 256	5.5e-100	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	281 - 720	3e-150	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AasI	GACNNNNNNGTC	1 cut(s)	2018
AatII	GACGTC	1 cut(s)	1144
Acc65I	GGTACC	1 cut(s)	2453
AccB1I	GGYRCC	1 cut(s)	2453
AccB7I	CCANNNNNTGG	2 cut(s)	1909, 2693
AccI	GTMKAC	1 cut(s)	966
AccII	CGCG	2 cut(s)	348, 893
AciI	CCGC	3 cut(s)	71, 685, 893
AclI	AACGTT	1 cut(s)	1245
AclWI	GGATC	4 cut(s)	87, 668, 818, 1228
AcoI	YGGCCR	2 cut(s)	2573, 2650
AcsI	RAATTY	7 cut(s)	930, 977, 1064, 1280, 1403, 2282, 2318
AcuI	CTGAAG	4 cut(s)	420, 1985, 2070, 2476
AcyI	GRCGYC	1 cut(s)	1141
AfaI	GTAC	7 cut(s)	41, 512, 1040, 1359, 2127, 2455, 2698
AfeI	AGCGCT	1 cut(s)	1654
AfiI	CCNNNNNNNGG	6 cut(s)	49, 617, 1515, 1576, 1909, 2693
AhdI	GACNNNNNGTC	1 cut(s)	1948
AjiI	CACGTC	1 cut(s)	2289
AjnI	CCWGG	5 cut(s)	350, 493, 610, 1575, 2190
AloI	GAACNNNNNNTCC	4 cut(s)	2532, 2564, 2775, 2807
Alw26I	GTCTC	1 cut(s)	1811
AlwI	GGATC	4 cut(s)	87, 668, 818, 1228
Ama87I	CYCGRG	1 cut(s)	1420
Aor51HI	AGCGCT	1 cut(s)	1654
AoxI	GGCC	9 cut(s)	1299, 1567, 2518, 2531, 2573, 2644, 2650, 2707, 2735
ApeKI	GCWGC	2 cut(s)	2674, 2747
ApoI	RAATTY	7 cut(s)	930, 977, 1064, 1280, 1403, 2282, 2318
ArsI	GACNNNNNNTTYG	2 cut(s)	2591, 2623
Asp700I	GAANNNNTTC	4 cut(s)	977, 1100, 1280, 2172
Asp718I	GGTACC	1 cut(s)	2453
AspLEI	GCGC	3 cut(s)	348, 350, 1655
AspS9I	GGNCC	5 cut(s)	1505, 1544, 1567, 2377, 2644
AsuC2I	CCSGG	4 cut(s)	176, 1421, 1422, 2734
AsuHPI	GGTGA	7 cut(s)	67, 164, 404, 481, 641, 1336, 1952
AsuII	TTCGAA	2 cut(s)	249, 1734
AvaI	CYCGRG	1 cut(s)	1420
AvaII	GGWCC	3 cut(s)	1505, 1544, 2377
AxyI	CCTNAGG	1 cut(s)	1668
BaeGI	GKGCMC	2 cut(s)	2074, 2205
BalI	TGGCCA	1 cut(s)	2575
BanI	GGYRCC	1 cut(s)	2453
BarI	GAAGNNNNNNTAC	2 cut(s)	1022, 1054
BbsI	GAAGAC	4 cut(s)	189, 226, 1179, 2061
BbvCI	CCTCAGC	1 cut(s)	2210
BbvI	GCAGC	2 cut(s)	2686, 2734
BccI	CCATC	9 cut(s)	19, 168, 188, 305, 1519, 1742, 2114, 2328, 2584
BceAI	ACGGC	3 cut(s)	130, 2503, 2631
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	5 cut(s)	352, 495, 612, 1577, 2192
BclI	TGATCA	1 cut(s)	1879
BcnI	CCSGG	4 cut(s)	176, 1421, 1422, 2734
BcoDI	GTCTC	1 cut(s)	1811
BfaI	CTAG	8 cut(s)	89, 140, 206, 452, 1053, 1571, 2433, 2580
BfmI	CTRYAG	4 cut(s)	1224, 1371, 1617, 1811
BfoI	RGCGCY	1 cut(s)	1656
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	2 cut(s)	2675, 2748
BlsI	GCNGC	2 cut(s)	2676, 2749
Bme1390I	CCNGG	9 cut(s)	176, 352, 495, 612, 1421, 1422, 1577, 2192, 2734
Bme18I	GGWCC	3 cut(s)	1505, 1544, 2377
BmeRI	GACNNNNNGTC	1 cut(s)	1948
BmeT110I	CYCGRG	1 cut(s)	1420
BmgBI	CACGTC	1 cut(s)	2289
BmgT120I	GGNCC	5 cut(s)	1505, 1544, 1567, 2377, 2644
BmiI	GGNNCC	6 cut(s)	9, 1507, 1603, 2378, 2455, 2645
BmrFI	CCNGG	9 cut(s)	176, 352, 495, 612, 1421, 1422, 1577, 2192, 2734
BmsI	GCATC	7 cut(s)	82, 589, 697, 1171, 1886, 1922, 2223
BpiI	GAAGAC	4 cut(s)	189, 226, 1179, 2061
BpmI	CTGGAG	3 cut(s)	592, 821, 2548
Bpu10I	CCTNAGC	1 cut(s)	2210
Bpu14I	TTCGAA	2 cut(s)	249, 1734
BpuEI	CTTGAG	2 cut(s)	872, 2580
BpuMI	CCSGG	4 cut(s)	176, 1421, 1422, 2734
BsaAI	YACGTR	1 cut(s)	1764
BsaBI	GATNNNNATC	1 cut(s)	711
BsaHI	GRCGYC	1 cut(s)	1141
BsaI	GGTCTC	1 cut(s)	1811
BsaWI	WCCGGW	1 cut(s)	1502
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 617, 1515, 1576, 1909, 2693
Bse118I	RCCGGY	1 cut(s)	2771
Bse1I	ACTGG	1 cut(s)	2406
Bse21I	CCTNAGG	1 cut(s)	1668
Bse3DI	GCAATG	2 cut(s)	375, 688
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	5 cut(s)	352, 495, 612, 1577, 2192
BseGI	GGATG	6 cut(s)	160, 712, 1753, 2131, 2214, 2339
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	6 cut(s)	49, 617, 1515, 1576, 1909, 2693
BseMI	GCAATG	2 cut(s)	375, 688
BseMII	CTCAG	5 cut(s)	822, 1150, 1860, 2224, 2472
BseNI	ACTGG	1 cut(s)	2406
BsePI	GCGCGC	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	2364
BseSI	GKGCMC	2 cut(s)	2074, 2205
BseXI	GCAGC	2 cut(s)	2686, 2734
Bsh1236I	CGCG	2 cut(s)	348, 893
BshFI	GGCC	9 cut(s)	1301, 1569, 2520, 2533, 2575, 2646, 2652, 2709, 2737
BshNI	GGYRCC	1 cut(s)	2453
BsiHKCI	CYCGRG	1 cut(s)	1420
BsiSI	CCGG	5 cut(s)	176, 1421, 1503, 2734, 2772
BslFI	GGGAC	3 cut(s)	590, 1491, 2390
BslI	CCNNNNNNNGG	6 cut(s)	49, 617, 1515, 1576, 1909, 2693
BsmAI	GTCTC	1 cut(s)	1811
BsmFI	GGGAC	3 cut(s)	590, 1491, 2390
BsmI	GAATGC	2 cut(s)	1870, 2192
BsnI	GGCC	9 cut(s)	1301, 1569, 2520, 2533, 2575, 2646, 2652, 2709, 2737
Bso31I	GGTCTC	1 cut(s)	1811
BsoBI	CYCGRG	1 cut(s)	1420
Bsp119I	TTCGAA	2 cut(s)	249, 1734
Bsp1286I	GDGCHC	2 cut(s)	2074, 2205
Bsp1407I	TGTACA	2 cut(s)	510, 2125
BspACI	CCGC	3 cut(s)	71, 685, 893
BspANI	GGCC	9 cut(s)	1301, 1569, 2520, 2533, 2575, 2646, 2652, 2709, 2737
BspCNI	CTCAG	5 cut(s)	823, 1149, 1861, 2223, 2471
BspFNI	CGCG	2 cut(s)	348, 893
BspHI	TCATGA	2 cut(s)	934, 1021
BspLI	GGNNCC	6 cut(s)	9, 1507, 1603, 2378, 2455, 2645
BspMAI	CTGCAG	1 cut(s)	1228
BspPI	GGATC	4 cut(s)	87, 668, 818, 1228
BspQI	GCTCTTC	1 cut(s)	534
BspT104I	TTCGAA	2 cut(s)	249, 1734
BspT107I	GGYRCC	1 cut(s)	2453
BspTNI	GGTCTC	1 cut(s)	1811
BsrDI	GCAATG	2 cut(s)	375, 688
BsrFI	RCCGGY	1 cut(s)	2771
BsrGI	TGTACA	2 cut(s)	510, 2125
BsrI	ACTGG	1 cut(s)	2406
BssAI	RCCGGY	1 cut(s)	2771
BssHII	GCGCGC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	1141
BssT1I	CCWWGG	4 cut(s)	284, 522, 2448, 2720
Bst2UI	CCWGG	5 cut(s)	352, 495, 612, 1577, 2192
Bst4CI	ACNGT	6 cut(s)	661, 964, 1907, 1932, 2628, 2756
Bst6I	CTCTTC	5 cut(s)	534, 1086, 1689, 1748, 2773
BstACI	GRCGYC	1 cut(s)	1141
BstAUI	TGTACA	2 cut(s)	510, 2125
BstBAI	YACGTR	1 cut(s)	1764
BstBI	TTCGAA	2 cut(s)	249, 1734
BstC8I	GCNNGC	6 cut(s)	97, 101, 348, 695, 1303, 2711
BstDEI	CTNAG	8 cut(s)	413, 761, 831, 1136, 1668, 1869, 2210, 2458
BstDSI	CCRYGG	2 cut(s)	1903, 2647
BstENI	CCTNNNNNAGG	2 cut(s)	615, 1574
BstF5I	GGATG	6 cut(s)	160, 712, 1753, 2131, 2214, 2339
BstFNI	CGCG	2 cut(s)	348, 893
BstH2I	RGCGCY	1 cut(s)	1656
BstHHI	GCGC	3 cut(s)	348, 350, 1655
BstMAI	GTCTC	1 cut(s)	1811
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 811, 2043
BstNI	CCWGG	5 cut(s)	352, 495, 612, 1577, 2192
BstNSI	RCATGY	4 cut(s)	779, 814, 919, 2771
BstSCI	CCNGG	9 cut(s)	174, 350, 493, 610, 1419, 1420, 1575, 2190, 2732
BstSFI	CTRYAG	4 cut(s)	1224, 1371, 1617, 1811
BstSLI	GKGCMC	2 cut(s)	2074, 2205
BstUI	CGCG	2 cut(s)	348, 893
BstV1I	GCAGC	2 cut(s)	2686, 2734
BstV2I	GAAGAC	4 cut(s)	189, 226, 1179, 2061
BstX2I	RGATCY	2 cut(s)	712, 1220
BstXI	CCANNNNNNTGG	1 cut(s)	1828
BstYI	RGATCY	2 cut(s)	712, 1220
Bsu36I	CCTNAGG	1 cut(s)	1668
BsuRI	GGCC	9 cut(s)	1301, 1569, 2520, 2533, 2575, 2646, 2652, 2709, 2737
BtgI	CCRYGG	2 cut(s)	1903, 2647
BtgZI	GCGATG	2 cut(s)	1909, 2052
BtrI	CACGTC	1 cut(s)	2289
BtsCI	GGATG	6 cut(s)	160, 712, 1753, 2131, 2214, 2339
BtsI	GCAGTG	1 cut(s)	2831
BtsIMutI	CAGTG	5 cut(s)	1347, 1928, 1993, 2413, 2831
Cac8I	GCNNGC	6 cut(s)	97, 101, 348, 695, 1303, 2711
CciI	TCATGA	2 cut(s)	934, 1021
CfoI	GCGC	3 cut(s)	348, 350, 1655
Cfr10I	RCCGGY	1 cut(s)	2771
Cfr13I	GGNCC	5 cut(s)	1505, 1544, 1567, 2377, 2644
Cfr9I	CCCGGG	1 cut(s)	1420
Csp6I	GTAC	7 cut(s)	40, 511, 1039, 1358, 2126, 2454, 2697
CspCI	CAANNNNNGTGG	2 cut(s)	1693, 1728
CviQI	GTAC	7 cut(s)	40, 511, 1039, 1358, 2126, 2454, 2697
DdeI	CTNAG	8 cut(s)	413, 761, 831, 1136, 1668, 1869, 2210, 2458
DraI	TTTAAA	1 cut(s)	1612
DrdI	GACNNNNNNGTC	1 cut(s)	2018
DriI	GACNNNNNGTC	1 cut(s)	1948
DseDI	GACNNNNNNGTC	1 cut(s)	2018
EaeI	YGGCCR	2 cut(s)	2573, 2650
Eam1104I	CTCTTC	5 cut(s)	534, 1086, 1689, 1748, 2773
Eam1105I	GACNNNNNGTC	1 cut(s)	1948
EarI	CTCTTC	5 cut(s)	534, 1086, 1689, 1748, 2773
Eco130I	CCWWGG	4 cut(s)	284, 522, 2448, 2720
Eco147I	AGGCCT	1 cut(s)	2533
Eco31I	GGTCTC	1 cut(s)	1811
Eco47I	GGWCC	3 cut(s)	1505, 1544, 2377
Eco47III	AGCGCT	1 cut(s)	1654
Eco57I	CTGAAG	4 cut(s)	420, 1985, 2070, 2476
Eco81I	CCTNAGG	1 cut(s)	1668
Eco88I	CYCGRG	1 cut(s)	1420
EcoNI	CCTNNNNNAGG	2 cut(s)	615, 1574
EcoO109I	RGGNCCY	1 cut(s)	1567
EcoRI	GAATTC	2 cut(s)	977, 1280
EcoRII	CCWGG	5 cut(s)	350, 493, 610, 1575, 2190
EcoT14I	CCWWGG	4 cut(s)	284, 522, 2448, 2720
ErhI	CCWWGG	4 cut(s)	284, 522, 2448, 2720
FaqI	GGGAC	3 cut(s)	590, 1491, 2390
FauI	CCCGC	3 cut(s)	64, 692, 886
FauNDI	CATATG	1 cut(s)	2103
FbaI	TGATCA	1 cut(s)	1879
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	2 cut(s)	2675, 2748
FokI	GGATG	6 cut(s)	147, 719, 1760, 2118, 2201, 2346
Fsp4HI	GCNGC	2 cut(s)	2675, 2748
FspBI	CTAG	8 cut(s)	89, 140, 206, 452, 1053, 1571, 2433, 2580
GlaI	GCGC	3 cut(s)	347, 349, 1654
GluI	GCNGC	2 cut(s)	2675, 2748
GsuI	CTGGAG	3 cut(s)	592, 821, 2548
HaeII	RGCGCY	1 cut(s)	1656
HaeIII	GGCC	9 cut(s)	1301, 1569, 2520, 2533, 2575, 2646, 2652, 2709, 2737
HapII	CCGG	5 cut(s)	176, 1421, 1503, 2734, 2772
HhaI	GCGC	3 cut(s)	348, 350, 1655
Hin1I	GRCGYC	1 cut(s)	1141
Hin6I	GCGC	3 cut(s)	346, 348, 1653
HinP1I	GCGC	3 cut(s)	346, 348, 1653
HindIII	AAGCTT	1 cut(s)	97
HpaII	CCGG	5 cut(s)	176, 1421, 1503, 2734, 2772
HphI	GGTGA	7 cut(s)	67, 164, 404, 481, 641, 1336, 1952
Hpy166II	GTNNAC	7 cut(s)	34, 748, 967, 1133, 2126, 2314, 2624
Hpy8I	GTNNAC	7 cut(s)	34, 748, 967, 1133, 2126, 2314, 2624
HpyCH4III	ACNGT	6 cut(s)	661, 964, 1907, 1932, 2628, 2756
HpyCH4IV	ACGT	7 cut(s)	550, 646, 1141, 1245, 1763, 2288, 2797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 811, 2043
HpyF3I	CTNAG	8 cut(s)	413, 761, 831, 1136, 1668, 1869, 2210, 2458
HpySE526I	ACGT	7 cut(s)	550, 646, 1141, 1245, 1763, 2288, 2797
Hsp92I	GRCGYC	1 cut(s)	1141
HspAI	GCGC	3 cut(s)	346, 348, 1653
KpnI	GGTACC	1 cut(s)	2457
Ksp22I	TGATCA	1 cut(s)	1879
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	5 cut(s)	325, 802, 1082, 2351, 2395
Lsp1109I	GCAGC	2 cut(s)	2686, 2734
LweI	GCATC	7 cut(s)	82, 589, 697, 1171, 1886, 1922, 2223
MaeI	CTAG	8 cut(s)	89, 140, 206, 452, 1053, 1571, 2433, 2580
MaeII	ACGT	7 cut(s)	550, 646, 1141, 1245, 1763, 2288, 2797
MaeIII	GTNAC	2 cut(s)	647, 1940
MfeI	CAATTG	2 cut(s)	945, 1212
MflI	RGATCY	2 cut(s)	712, 1220
MhlI	GDGCHC	2 cut(s)	2074, 2205
MlsI	TGGCCA	1 cut(s)	2575
MluNI	TGGCCA	1 cut(s)	2575
MlyI	GAGTC	3 cut(s)	470, 2051, 2522
Mox20I	TGGCCA	1 cut(s)	2575
MroXI	GAANNNNTTC	4 cut(s)	977, 1100, 1280, 2172
MscI	TGGCCA	1 cut(s)	2575
MseI	TTAA	6 cut(s)	360, 554, 840, 1200, 1611, 2501
MslI	CAYNNNNRTG	2 cut(s)	939, 2772
Msp20I	TGGCCA	1 cut(s)	2575
MspA1I	CMGCKG	1 cut(s)	1238
MspI	CCGG	5 cut(s)	176, 1421, 1503, 2734, 2772
MspR9I	CCNGG	9 cut(s)	176, 352, 495, 612, 1421, 1422, 1577, 2192, 2734
MunI	CAATTG	2 cut(s)	945, 1212
Mva1269I	GAATGC	2 cut(s)	1870, 2192
MvaI	CCWGG	5 cut(s)	352, 495, 612, 1577, 2192
MvnI	CGCG	2 cut(s)	348, 893
MwoI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 811, 2043
NciI	CCSGG	4 cut(s)	176, 1421, 1422, 2734
NdeI	CATATG	1 cut(s)	2103
NlaIV	GGNNCC	6 cut(s)	9, 1507, 1603, 2378, 2455, 2645
NmeAIII	GCCGAG	1 cut(s)	2678
NmuCI	GTSAC	2 cut(s)	647, 1940
NspI	RCATGY	4 cut(s)	779, 814, 919, 2771
NspV	TTCGAA	2 cut(s)	249, 1734
PagI	TCATGA	2 cut(s)	934, 1021
PauI	GCGCGC	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	2533
PciSI	GCTCTTC	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	652
PctI	GAATGC	2 cut(s)	1870, 2192
PdmI	GAANNNNTTC	4 cut(s)	977, 1100, 1280, 2172
PfeI	GAWTC	9 cut(s)	337, 379, 476, 563, 1012, 1160, 1377, 1799, 1983
PflFI	GACNNNGTC	1 cut(s)	2060
PflMI	CCANNNNNTGG	2 cut(s)	1909, 2693
PkrI	GCNGC	2 cut(s)	2676, 2749
PleI	GAGTC	3 cut(s)	469, 2051, 2521
PpsI	GAGTC	3 cut(s)	469, 2051, 2521
Ppu21I	YACGTR	1 cut(s)	1764
PsiI	TTATAA	1 cut(s)	719
Psp1406I	AACGTT	1 cut(s)	1245
Psp6I	CCWGG	5 cut(s)	350, 493, 610, 1575, 2190
PspGI	CCWGG	5 cut(s)	350, 493, 610, 1575, 2190
PspN4I	GGNNCC	6 cut(s)	9, 1507, 1603, 2378, 2455, 2645
PspPI	GGNCC	5 cut(s)	1505, 1544, 1567, 2377, 2644
PstI	CTGCAG	1 cut(s)	1228
PsuI	RGATCY	2 cut(s)	712, 1220
PsyI	GACNNNGTC	1 cut(s)	2060
PteI	GCGCGC	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	1238
RsaI	GTAC	7 cut(s)	41, 512, 1040, 1359, 2127, 2455, 2698
RsaNI	GTAC	7 cut(s)	40, 511, 1039, 1358, 2126, 2454, 2697
RseI	CAYNNNNRTG	2 cut(s)	939, 2772
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	6 cut(s)	360, 554, 840, 1200, 1611, 2501
SatI	GCNGC	2 cut(s)	2675, 2748
Sau96I	GGNCC	5 cut(s)	1505, 1544, 1567, 2377, 2644
SchI	GAGTC	3 cut(s)	470, 2051, 2522
ScrFI	CCNGG	9 cut(s)	176, 352, 495, 612, 1421, 1422, 1577, 2192, 2734
SduI	GDGCHC	2 cut(s)	2074, 2205
SfaNI	GCATC	7 cut(s)	82, 589, 697, 1171, 1886, 1922, 2223
SfcI	CTRYAG	4 cut(s)	1224, 1371, 1617, 1811
SfuI	TTCGAA	2 cut(s)	249, 1734
SinI	GGWCC	3 cut(s)	1505, 1544, 2377
SmaI	CCCGGG	1 cut(s)	1422
SmiMI	CAYNNNNRTG	2 cut(s)	939, 2772
SmlI	CTYRAG	2 cut(s)	851, 2595
SmoI	CTYRAG	2 cut(s)	851, 2595
SseBI	AGGCCT	1 cut(s)	2533
SsiI	CCGC	3 cut(s)	71, 685, 893
SspI	AATATT	4 cut(s)	244, 274, 988, 1101
SspMI	CTAG	8 cut(s)	89, 140, 206, 452, 1053, 1571, 2433, 2580
StuI	AGGCCT	1 cut(s)	2533
StyD4I	CCNGG	9 cut(s)	174, 350, 493, 610, 1419, 1420, 1575, 2190, 2732
StyI	CCWWGG	4 cut(s)	284, 522, 2448, 2720
TaaI	ACNGT	6 cut(s)	661, 964, 1907, 1932, 2628, 2756
TaiI	ACGT	7 cut(s)	553, 649, 1144, 1248, 1766, 2291, 2800
TaqI	TCGA	5 cut(s)	126, 249, 1163, 1734, 1952
TaqII	GACCGA	1 cut(s)	2394
TatI	WGTACW	2 cut(s)	510, 2125
TfiI	GAWTC	9 cut(s)	337, 379, 476, 563, 1012, 1160, 1377, 1799, 1983
Tru1I	TTAA	6 cut(s)	360, 554, 840, 1200, 1611, 2501
Tru9I	TTAA	6 cut(s)	360, 554, 840, 1200, 1611, 2501
TscAI	CASTG	5 cut(s)	1354, 1935, 1993, 2413, 2831
TseFI	GTSAC	2 cut(s)	647, 1940
TseI	GCWGC	2 cut(s)	2674, 2747
Tsp45I	GTSAC	2 cut(s)	647, 1940
TspGWI	ACGGA	1 cut(s)	1706
TspMI	CCCGGG	1 cut(s)	1420
TspRI	CASTG	5 cut(s)	1354, 1935, 1993, 2413, 2831
Tth111I	GACNNNGTC	1 cut(s)	2060
Van91I	CCANNNNNTGG	2 cut(s)	1909, 2693
VpaK11BI	GGWCC	3 cut(s)	1505, 1544, 2377
XagI	CCTNNNNNAGG	2 cut(s)	615, 1574
XapI	RAATTY	7 cut(s)	930, 977, 1064, 1280, 1403, 2282, 2318
XbaI	TCTAGA	4 cut(s)	88, 139, 1052, 2579
XceI	RCATGY	4 cut(s)	779, 814, 919, 2771
XcmI	CCANNNNNNNNNTGG	2 cut(s)	695, 1518
XmaI	CCCGGG	1 cut(s)	1420
XmiI	GTMKAC	1 cut(s)	966
XmnI	GAANNNNTTC	4 cut(s)	977, 1100, 1280, 2172
XspI	CTAG	8 cut(s)	89, 140, 206, 452, 1053, 1571, 2433, 2580
ZraI	GACGTC	1 cut(s)	1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.