Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

44621668 .. 44627589

Gene Structure 5922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

ATGGGGGTTCCATCGTTTTTTCGTTGGTTGGTAAACAAGTACCCTAAAGTGGTGGTGAAAGCCATTGAAGCGGGAGAGGATCAGTTTCTAGATGCAAGCTTGCCAAACCCAAATGGCATAGAGTTCGATAACCTGTTTCTAGACATGAATGGGATTATCCATCCCTGCTTTCATCCGGAAGAAGATGATGATGATGACGGTTATGGACTTGCACCGCCAAGAACTTATGAAGATGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATGGAGTTGCTCCGAGGGCTAAAATGAATCAACAGCGCGCCAGGCGTTTTAAGTCGGCAATGGACAAGAATCTTGCTGTGGGTGAGGCTGAAGAAGAGAAACTAAGACAGCAATTTGCAAAGGAAGGGAAAAAAATCCTACTAGAACAGGAGTCTGAAGTTTCTGATTCTAATATAATCACCCCTGGAACGGATTTCATGTACAAGTTATCCAAGGCTCTTCAAAGCTACATCAATCTACGTTTAAGCCAAGATTCAGGCTGGAGGGACATCAAGGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGATGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGTATGGTCTGGATGCGGATCTTATAATGTTGTCTTTGGCAACACATGAAGTTCACCTTTCCATACTAAGAGAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAGTGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGTATCATTGATGATTTCATCTTTATATGTTTCTTCGCGGGAAATGATTTTTTACCCCACATGCCAACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCAGGTACGACTGGGTGCTACAGGATTCAAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCCGGGGGAGATTGAAAACAAAAGGAAGGAAGTAGTTAAAAGCTACACAGAAGGACTGCTCTGGGTTCTTTTATACTACTTTTCCGGCCCCCCATCGTGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAGCTCAGGTCAAACCACAATTTGAGAAAGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGCGCTCACGCACTTCCTAAGGATTATAGGACACTTATGATGGAGGAGTGTTCCACAATCATTGATTTTTACCCTTCTGACTTCGAAATTGACATGGATGGGAAGAGATTTACGTGGCAGGGTATCTGCAAACTTCCCTTTATAGAAGAATCCCGACTTCTACATGAGACCAGAAAATTGGAAAAGGAACTAATGGCAGAAGAAATTGACAGGAATGCTGAGAAACTTGATCAGTTATTCATGCGAAGCACCCACGGTATGGCATCACAAATTGTTTCACTGTCTAATGGTGACAATCAGTCGATCAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCGGCAGCTTGATGACAATGATGCCAAGGTCAAAGAAAGAGATGATAGCTCTGAAGAAGACTCTGTCTTATGTACCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCGTTTACTTGATGGTGTACAACATCCTTCCAAGACAATAAATGAACACGAGCTTATGGAAACAGTTCTATGGCATGAATGTCAGGGAAATGTGATCTCCCGCAGCATCCAGCAAGTACAGGCAAGGTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

635

Amino Acids

73.46

Weight (kDa)

5.25

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 257	5.3e-101	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	282 - 338	5.5e-28	Xrn1 helical domain
XRN_M	PF17846	340 - 607	1.1e-99	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	1573
AccI	GTMKAC	1 cut(s)	969
AccII	CGCG	2 cut(s)	351, 896
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	6 cut(s)	71, 215, 688, 713, 896, 1873
AclWI	GGATC	4 cut(s)	87, 671, 723, 821
AcsI	RAATTY	3 cut(s)	933, 980, 1067
AcuI	CTGAAG	3 cut(s)	423, 489, 1734
AfaI	GTAC	6 cut(s)	41, 515, 1023, 1735, 1791, 1890
AfeI	AGCGCT	1 cut(s)	1318
AfiI	CCNNNNNNNGG	6 cut(s)	49, 502, 620, 1179, 1240, 1573
AgsI	TTSAA	7 cut(s)	68, 241, 274, 536, 985, 1045, 1097
AhdI	GACNNNNNGTC	1 cut(s)	1612
AjnI	CCWGG	3 cut(s)	353, 496, 613
Alw26I	GTCTC	1 cut(s)	1475
AlwI	GGATC	4 cut(s)	87, 671, 723, 821
Ama87I	CYCGRG	1 cut(s)	1084
Aor13HI	TCCGGA	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	1318
AoxI	GGCC	2 cut(s)	1168, 1231
ApeKI	GCWGC	2 cut(s)	1666, 1875
ApoI	RAATTY	3 cut(s)	933, 980, 1067
Asp700I	GAANNNNTTC	2 cut(s)	980, 1836
AspLEI	GCGC	3 cut(s)	351, 353, 1319
AspS9I	GGNCC	3 cut(s)	1169, 1208, 1231
AsuC2I	CCSGG	2 cut(s)	1085, 1086
AsuHPI	GGTGA	6 cut(s)	67, 407, 484, 644, 743, 1616
AsuII	TTCGAA	2 cut(s)	252, 1398
AvaI	CYCGRG	1 cut(s)	1084
AvaII	GGWCC	1 cut(s)	1208
AxyI	CCTNAGG	1 cut(s)	1332
BauI	CACGAG	1 cut(s)	1820
BbsI	GAAGAC	2 cut(s)	229, 1725
BbvI	GCAGC	2 cut(s)	1678, 1887
BccI	CCATC	7 cut(s)	19, 168, 308, 1183, 1348, 1406, 1778
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 1754, 1788
BciT130I	CCWGG	3 cut(s)	355, 498, 615
BclI	TGATCA	1 cut(s)	1543
BcnI	CCSGG	2 cut(s)	1085, 1086
BcoDI	GTCTC	1 cut(s)	1475
BfaI	CTAG	4 cut(s)	89, 140, 455, 1235
BfmI	CTRYAG	2 cut(s)	1035, 1281
BfoI	RGCGCY	1 cut(s)	1320
BisI	GCNGC	2 cut(s)	1667, 1876
BlsI	GCNGC	2 cut(s)	1668, 1877
Bme1390I	CCNGG	5 cut(s)	355, 498, 615, 1085, 1086
Bme18I	GGWCC	1 cut(s)	1208
BmeRI	GACNNNNNGTC	1 cut(s)	1612
BmeT110I	CYCGRG	1 cut(s)	1084
BmgT120I	GGNCC	3 cut(s)	1169, 1208, 1231
BmiI	GGNNCC	3 cut(s)	9, 1171, 1267
BmrFI	CCNGG	5 cut(s)	355, 498, 615, 1085, 1086
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	6 cut(s)	82, 592, 700, 1586, 1672, 1887
BmuI	ACTGGG	1 cut(s)	1037
BpiI	GAAGAC	2 cut(s)	229, 1725
BpmI	CTGGAG	2 cut(s)	595, 824
Bpu10I	CCTNAGC	1 cut(s)	1239
Bpu14I	TTCGAA	2 cut(s)	252, 1398
BpuEI	CTTGAG	1 cut(s)	875
BpuMI	CCSGG	2 cut(s)	1085, 1086
BsaAI	YACGTR	1 cut(s)	1428
BsaBI	GATNNNNATC	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	1475
BsaJI	CCNNGG	9 cut(s)	287, 326, 496, 525, 614, 1084, 1085, 1567, 1686
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 502, 620, 1179, 1240, 1573
Bse1I	ACTGG	1 cut(s)	1032
Bse21I	CCTNAGG	1 cut(s)	1332
Bse3DI	GCAATG	2 cut(s)	378, 691
Bse8I	GATNNNNATC	1 cut(s)	714
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	3 cut(s)	355, 498, 615
BseDI	CCNNGG	9 cut(s)	287, 326, 496, 525, 614, 1084, 1085, 1567, 1686
BseGI	GGATG	6 cut(s)	160, 172, 715, 1417, 1795, 1878
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	6 cut(s)	49, 502, 620, 1179, 1240, 1573
BseMI	GCAATG	2 cut(s)	378, 691
BseMII	CTCAG	3 cut(s)	825, 1253, 1524
BseNI	ACTGG	1 cut(s)	1032
BsePI	GCGCGC	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	1373
BseXI	GCAGC	2 cut(s)	1678, 1887
Bsh1236I	CGCG	2 cut(s)	351, 896
BshFI	GGCC	2 cut(s)	1170, 1233
BsiHKCI	CYCGRG	1 cut(s)	1084
BsiSI	CCGG	4 cut(s)	176, 1085, 1167, 1663
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	6 cut(s)	49, 502, 620, 1179, 1240, 1573
BsmAI	GTCTC	1 cut(s)	1475
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	1 cut(s)	1534
BsnI	GGCC	2 cut(s)	1170, 1233
Bso31I	GGTCTC	1 cut(s)	1475
BsoBI	CYCGRG	1 cut(s)	1084
Bsp119I	TTCGAA	2 cut(s)	252, 1398
Bsp13I	TCCGGA	1 cut(s)	175
Bsp1407I	TGTACA	2 cut(s)	513, 1789
Bsp143I	GATC	9 cut(s)	79, 262, 676, 715, 826, 850, 1543, 1617, 1866
BspACI	CCGC	6 cut(s)	71, 215, 688, 713, 896, 1873
BspANI	GGCC	2 cut(s)	1170, 1233
BspCNI	CTCAG	3 cut(s)	826, 1252, 1525
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	2 cut(s)	351, 896
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	3 cut(s)	9, 1171, 1267
BspPI	GGATC	4 cut(s)	87, 671, 723, 821
BspQI	GCTCTTC	1 cut(s)	537
BspT104I	TTCGAA	2 cut(s)	252, 1398
BspTNI	GGTCTC	1 cut(s)	1475
BsrDI	GCAATG	2 cut(s)	378, 691
BsrGI	TGTACA	2 cut(s)	513, 1789
BsrI	ACTGG	1 cut(s)	1032
BssECI	CCNNGG	9 cut(s)	287, 326, 496, 525, 614, 1084, 1085, 1567, 1686
BssHII	GCGCGC	1 cut(s)	349
BssMI	GATC	9 cut(s)	79, 262, 676, 715, 826, 850, 1543, 1617, 1866
BssSI	CACGAG	1 cut(s)	1820
BssT1I	CCWWGG	3 cut(s)	287, 525, 1686
Bst2BI	CACGAG	1 cut(s)	1820
Bst2UI	CCWGG	3 cut(s)	355, 498, 615
Bst4CI	ACNGT	6 cut(s)	200, 664, 967, 1571, 1596, 1837
Bst6I	CTCTTC	3 cut(s)	402, 537, 1412
BstAUI	TGTACA	2 cut(s)	513, 1789
BstBAI	YACGTR	1 cut(s)	1428
BstBI	TTCGAA	2 cut(s)	252, 1398
BstC8I	GCNNGC	3 cut(s)	97, 101, 351
BstDEI	CTNAG	6 cut(s)	416, 764, 834, 1239, 1332, 1533
BstDSI	CCRYGG	1 cut(s)	1567
BstENI	CCTNNNNNAGG	2 cut(s)	618, 1238
BstF5I	GGATG	6 cut(s)	160, 172, 715, 1417, 1795, 1878
BstFNI	CGCG	2 cut(s)	351, 896
BstH2I	RGCGCY	1 cut(s)	1320
BstHHI	GCGC	3 cut(s)	351, 353, 1319
BstKTI	GATC	9 cut(s)	82, 265, 679, 718, 829, 853, 1546, 1620, 1869
BstMAI	GTCTC	1 cut(s)	1475
BstMBI	GATC	9 cut(s)	79, 262, 676, 715, 826, 850, 1543, 1617, 1866
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 329, 355, 814
BstNI	CCWGG	3 cut(s)	355, 498, 615
BstNSI	RCATGY	3 cut(s)	782, 817, 922
BstSCI	CCNGG	5 cut(s)	353, 496, 613, 1083, 1084
BstSFI	CTRYAG	2 cut(s)	1035, 1281
BstUI	CGCG	2 cut(s)	351, 896
BstV1I	GCAGC	2 cut(s)	1678, 1887
BstV2I	GAAGAC	2 cut(s)	229, 1725
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	1492
BstYI	RGATCY	1 cut(s)	715
Bsu36I	CCTNAGG	1 cut(s)	1332
BsuRI	GGCC	2 cut(s)	1170, 1233
BtgI	CCRYGG	1 cut(s)	1567
BtsCI	GGATG	6 cut(s)	160, 172, 715, 1417, 1795, 1878
BtsIMutI	CAGTG	3 cut(s)	829, 1592, 1657
Cac8I	GCNNGC	3 cut(s)	97, 101, 351
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	3 cut(s)	351, 353, 1319
Cfr13I	GGNCC	3 cut(s)	1169, 1208, 1231
Cfr9I	CCCGGG	1 cut(s)	1084
Csp6I	GTAC	6 cut(s)	40, 514, 1022, 1734, 1790, 1889
CspCI	CAANNNNNGTGG	2 cut(s)	1357, 1392
CviQI	GTAC	6 cut(s)	40, 514, 1022, 1734, 1790, 1889
DdeI	CTNAG	6 cut(s)	416, 764, 834, 1239, 1332, 1533
DpnI	GATC	9 cut(s)	81, 264, 678, 717, 828, 852, 1545, 1619, 1868
DpnII	GATC	9 cut(s)	79, 262, 676, 715, 826, 850, 1543, 1617, 1866
DraI	TTTAAA	1 cut(s)	1276
DriI	GACNNNNNGTC	1 cut(s)	1612
Eam1104I	CTCTTC	3 cut(s)	402, 537, 1412
Eam1105I	GACNNNNNGTC	1 cut(s)	1612
EarI	CTCTTC	3 cut(s)	402, 537, 1412
Eco130I	CCWWGG	3 cut(s)	287, 525, 1686
Eco31I	GGTCTC	1 cut(s)	1475
Eco47I	GGWCC	1 cut(s)	1208
Eco47III	AGCGCT	1 cut(s)	1318
Eco57I	CTGAAG	3 cut(s)	423, 489, 1734
Eco81I	CCTNAGG	1 cut(s)	1332
Eco88I	CYCGRG	1 cut(s)	1084
EcoNI	CCTNNNNNAGG	2 cut(s)	618, 1238
EcoO109I	RGGNCCY	1 cut(s)	1231
EcoRI	GAATTC	1 cut(s)	980
EcoRII	CCWGG	3 cut(s)	353, 496, 613
EcoT14I	CCWWGG	3 cut(s)	287, 525, 1686
ErhI	CCWWGG	3 cut(s)	287, 525, 1686
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FaqI	GGGAC	1 cut(s)	593
FauI	CCCGC	4 cut(s)	64, 695, 889, 1880
FauNDI	CATATG	1 cut(s)	1767
FbaI	TGATCA	1 cut(s)	1543
FblI	GTMKAC	1 cut(s)	969
Fnu4HI	GCNGC	2 cut(s)	1667, 1876
FokI	GGATG	6 cut(s)	147, 159, 722, 1424, 1782, 1865
Fsp4HI	GCNGC	2 cut(s)	1667, 1876
FspBI	CTAG	4 cut(s)	89, 140, 455, 1235
GlaI	GCGC	3 cut(s)	350, 352, 1318
GluI	GCNGC	2 cut(s)	1667, 1876
GsuI	CTGGAG	2 cut(s)	595, 824
HaeII	RGCGCY	1 cut(s)	1320
HaeIII	GGCC	2 cut(s)	1170, 1233
HapII	CCGG	4 cut(s)	176, 1085, 1167, 1663
HhaI	GCGC	3 cut(s)	351, 353, 1319
Hin6I	GCGC	3 cut(s)	349, 351, 1317
HinP1I	GCGC	3 cut(s)	349, 351, 1317
HindIII	AAGCTT	1 cut(s)	97
HpaII	CCGG	4 cut(s)	176, 1085, 1167, 1663
HphI	GGTGA	6 cut(s)	67, 407, 484, 644, 743, 1616
Hpy166II	GTNNAC	5 cut(s)	34, 751, 970, 1778, 1790
Hpy188I	TCNGA	7 cut(s)	327, 469, 478, 601, 1222, 1393, 1714
Hpy8I	GTNNAC	5 cut(s)	34, 751, 970, 1778, 1790
HpyAV	CCTTC	8 cut(s)	431, 614, 678, 1102, 1127, 1222, 1398, 1809
HpyCH4III	ACNGT	6 cut(s)	200, 664, 967, 1571, 1596, 1837
HpyCH4IV	ACGT	3 cut(s)	553, 649, 1427
HpyCH4V	TGCA	9 cut(s)	95, 212, 431, 778, 817, 947, 1065, 1443, 1765
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 329, 355, 814
HpyF3I	CTNAG	6 cut(s)	416, 764, 834, 1239, 1332, 1533
HpySE526I	ACGT	3 cut(s)	553, 649, 1427
HspAI	GCGC	3 cut(s)	349, 351, 1317
Kpn2I	TCCGGA	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	1543
Kzo9I	GATC	9 cut(s)	79, 262, 676, 715, 826, 850, 1543, 1617, 1866
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	328, 805
Lsp1109I	GCAGC	2 cut(s)	1678, 1887
LweI	GCATC	6 cut(s)	82, 592, 700, 1586, 1672, 1887
MaeI	CTAG	4 cut(s)	89, 140, 455, 1235
MaeII	ACGT	3 cut(s)	553, 649, 1427
MaeIII	GTNAC	2 cut(s)	650, 1604
MalI	GATC	9 cut(s)	81, 264, 678, 717, 828, 852, 1545, 1619, 1868
MboI	GATC	9 cut(s)	79, 262, 676, 715, 826, 850, 1543, 1617, 1866
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	1 cut(s)	715
MlyI	GAGTC	2 cut(s)	473, 1715
MroI	TCCGGA	1 cut(s)	175
MroXI	GAANNNNTTC	2 cut(s)	980, 1836
MseI	TTAA	5 cut(s)	363, 557, 843, 1119, 1275
MslI	CAYNNNNRTG	1 cut(s)	942
MspI	CCGG	4 cut(s)	176, 1085, 1167, 1663
MspR9I	CCNGG	5 cut(s)	355, 498, 615, 1085, 1086
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	1 cut(s)	1534
MvaI	CCWGG	3 cut(s)	355, 498, 615
MvnI	CGCG	2 cut(s)	351, 896
MwoI	GCNNNNNNNGC	4 cut(s)	68, 329, 355, 814
NciI	CCSGG	2 cut(s)	1085, 1086
NdeI	CATATG	1 cut(s)	1767
NdeII	GATC	9 cut(s)	79, 262, 676, 715, 826, 850, 1543, 1617, 1866
NlaIV	GGNNCC	3 cut(s)	9, 1171, 1267
NmuCI	GTSAC	2 cut(s)	650, 1604
NspI	RCATGY	3 cut(s)	782, 817, 922
NspV	TTCGAA	2 cut(s)	252, 1398
PagI	TCATGA	1 cut(s)	937
PauI	GCGCGC	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	655
PctI	GAATGC	1 cut(s)	1534
PdmI	GAANNNNTTC	2 cut(s)	980, 1836
PfeI	GAWTC	8 cut(s)	340, 382, 479, 566, 1015, 1041, 1463, 1647
PflFI	GACNNNGTC	1 cut(s)	1724
PflMI	CCANNNNNTGG	1 cut(s)	1573
PkrI	GCNGC	2 cut(s)	1668, 1877
PleI	GAGTC	2 cut(s)	472, 1715
PpsI	GAGTC	2 cut(s)	472, 1715
Ppu21I	YACGTR	1 cut(s)	1428
PsiI	TTATAA	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	353, 496, 613
PspGI	CCWGG	3 cut(s)	353, 496, 613
PspN4I	GGNNCC	3 cut(s)	9, 1171, 1267
PspPI	GGNCC	3 cut(s)	1169, 1208, 1231
PsuI	RGATCY	1 cut(s)	715
PsyI	GACNNNGTC	1 cut(s)	1724
PteI	GCGCGC	1 cut(s)	349
RsaI	GTAC	6 cut(s)	41, 515, 1023, 1735, 1791, 1890
RsaNI	GTAC	6 cut(s)	40, 514, 1022, 1734, 1790, 1889
RseI	CAYNNNNRTG	1 cut(s)	942
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	5 cut(s)	363, 557, 843, 1119, 1275
SatI	GCNGC	2 cut(s)	1667, 1876
Sau3AI	GATC	9 cut(s)	79, 262, 676, 715, 826, 850, 1543, 1617, 1866
Sau96I	GGNCC	3 cut(s)	1169, 1208, 1231
SchI	GAGTC	2 cut(s)	473, 1715
ScrFI	CCNGG	5 cut(s)	355, 498, 615, 1085, 1086
SfaNI	GCATC	6 cut(s)	82, 592, 700, 1586, 1672, 1887
SfcI	CTRYAG	2 cut(s)	1035, 1281
SfuI	TTCGAA	2 cut(s)	252, 1398
SinI	GGWCC	1 cut(s)	1208
SmaI	CCCGGG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	1 cut(s)	942
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
SsiI	CCGC	6 cut(s)	71, 215, 688, 713, 896, 1873
SspI	AATATT	3 cut(s)	247, 277, 991
SspMI	CTAG	4 cut(s)	89, 140, 455, 1235
StyD4I	CCNGG	5 cut(s)	353, 496, 613, 1083, 1084
StyI	CCWWGG	3 cut(s)	287, 525, 1686
TaaI	ACNGT	6 cut(s)	200, 664, 967, 1571, 1596, 1837
TaiI	ACGT	3 cut(s)	556, 652, 1430
TaqI	TCGA	4 cut(s)	126, 252, 1398, 1616
TatI	WGTACW	3 cut(s)	513, 1789, 1888
TfiI	GAWTC	8 cut(s)	340, 382, 479, 566, 1015, 1041, 1463, 1647
Tru1I	TTAA	5 cut(s)	363, 557, 843, 1119, 1275
Tru9I	TTAA	5 cut(s)	363, 557, 843, 1119, 1275
TscAI	CASTG	3 cut(s)	829, 1599, 1657
TseFI	GTSAC	2 cut(s)	650, 1604
TseI	GCWGC	2 cut(s)	1666, 1875
Tsp45I	GTSAC	2 cut(s)	650, 1604
TspGWI	ACGGA	1 cut(s)	518
TspMI	CCCGGG	1 cut(s)	1084
TspRI	CASTG	3 cut(s)	829, 1599, 1657
Tth111I	GACNNNGTC	1 cut(s)	1724
Van91I	CCANNNNNTGG	1 cut(s)	1573
VpaK11BI	GGWCC	1 cut(s)	1208
XagI	CCTNNNNNAGG	2 cut(s)	618, 1238
XapI	RAATTY	3 cut(s)	933, 980, 1067
XbaI	TCTAGA	2 cut(s)	88, 139
XceI	RCATGY	3 cut(s)	782, 817, 922
XcmI	CCANNNNNNNNNTGG	2 cut(s)	698, 1182
XmaI	CCCGGG	1 cut(s)	1084
XmiI	GTMKAC	1 cut(s)	969
XmnI	GAANNNNTTC	2 cut(s)	980, 1836
XspI	CTAG	4 cut(s)	89, 140, 455, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.