Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000148.1

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

9841 .. 14506

Gene Structure 4666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000148.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgaacaattttaccgtcacggagacatttgttactgttaacgggcgcattccagcagcaccatgttctcagagtgcaattgatttactgatgacagtctacaagaaagaactcaagaatattggtggttatttggttgatatgattcggatagaggaagacattgatgctggaagttcaaattttaatttcgaagccattgatggatctgcagttgtttcagtggataatgtttcatcttccgaatcagaggaaattgacaggaatgctgagaaacttgatcagttattcatgcgaagaacccacggtatggcatcccaaattgtttcactgtctaatggtgacaatctgttgatcaagattgacaccactttgagctttggagtcggtggttttatccgtcagcttgatgacaatgatgccaaggtcaaagaaagagatgatagctctgaagaagactctgtcttcccaaacccactaccgagcctagcagcccagtcacagcagcatctccaccggcgctaccgcaccgcccttcagcctgcccacaggcgcgaacccacctctctgctgccccgaactggcctcacctgcgcacaactcagcgcgtcgcctccactgccggatctccaaactacagcagcagcagccccgcctgcgtcgatcccagcagcccactgcatcgccgcttgcaatacaccgacctgcacaacccagcagccccggcgttctctcatccgtgcagcctgcccaaccgcgcagcccaccgacgtctgcccttcgccagttgcagatcgaagcgtcctccaacctcgattccgtcgctactgctccccatacctgcggtgctgcaccttcccgtcgatcacagcagcctaccgaccccgcctagcagcggccttgcaaaacccgccttcccgccgccgcccacgacctgcgtcagctatttttttttttgcagttctgcaaaccaaaagggggaagaagacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N

Protein Analysis

330

Amino Acids

36.12

Weight (kDa)

8.82

Isoelectric Point (pI)

67.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
AatII	GACGTC	1 cut(s)	774
Acc16I	TGCGCA	1 cut(s)	595
Acc36I	ACCTGC	4 cut(s)	599, 713, 849, 943
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	3 cut(s)	555, 608, 758
AclWI	GGATC	3 cut(s)	214, 633, 658
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	2 cut(s)	471, 521
AcyI	GRCGYC	1 cut(s)	771
AfiI	CCNNNNNNNGG	4 cut(s)	310, 581, 895, 978
AgsI	TTSAA	1 cut(s)	180
AjiI	CACGTC	1 cut(s)	990
AluBI	AGCT	4 cut(s)	378, 406, 447, 944
AluI	AGCT	4 cut(s)	378, 406, 447, 944
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	3 cut(s)	214, 633, 658
AoxI	GGCC	2 cut(s)	583, 897
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	6 cut(s)	48, 522, 555, 596, 608, 760
AsuC2I	CCSGG	1 cut(s)	724
AsuHPI	GGTGA	2 cut(s)	353, 580
AsuII	TTCGAA	1 cut(s)	192
BbsI	GAAGAC	3 cut(s)	165, 457, 462
BccI	CCATC	1 cut(s)	197
BclI	TGATCA	2 cut(s)	280, 354
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	488, 890
BfmI	CTRYAG	2 cut(s)	210, 636
BfoI	RGCGCY	1 cut(s)	523
BfuAI	ACCTGC	4 cut(s)	599, 713, 849, 943
Bme1390I	CCNGG	1 cut(s)	724
BmgBI	CACGTC	1 cut(s)	990
BmrFI	CCNGG	1 cut(s)	724
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	5 cut(s)	157, 323, 409, 517, 690
BmuI	ACTGGG	1 cut(s)	490
BoxI	GACNNNNGTC	1 cut(s)	937
BpiI	GAAGAC	3 cut(s)	165, 457, 462
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	724
BsaHI	GRCGYC	1 cut(s)	771
BsaJI	CCNNGG	3 cut(s)	304, 423, 722
Bsc4I	CCNNNNNNNGG	4 cut(s)	310, 581, 895, 978
Bse118I	RCCGGY	1 cut(s)	516
Bse1I	ACTGG	3 cut(s)	496, 586, 785
BseDI	CCNNGG	3 cut(s)	304, 423, 722
BseGI	GGATG	2 cut(s)	314, 735
BseLI	CCNNNNNNNGG	4 cut(s)	310, 581, 895, 978
BseMII	CTCAG	3 cut(s)	83, 261, 616
BseNI	ACTGG	3 cut(s)	496, 586, 785
BseYI	CCCAGC	2 cut(s)	667, 714
BsgI	GTGCAG	3 cut(s)	691, 762, 835
Bsh1236I	CGCG	3 cut(s)	555, 608, 758
BshFI	GGCC	2 cut(s)	585, 899
BsiSI	CCGG	3 cut(s)	517, 623, 724
BslI	CCNNNNNNNGG	4 cut(s)	310, 581, 895, 978
BsmAI	GTCTC	1 cut(s)	17
BsmI	GAATGC	2 cut(s)	48, 271
BsnI	GGCC	2 cut(s)	585, 899
Bsp119I	TTCGAA	1 cut(s)	192
Bsp143I	GATC	7 cut(s)	206, 280, 354, 625, 663, 793, 864
BspANI	GGCC	2 cut(s)	585, 899
BspCNI	CTCAG	3 cut(s)	82, 262, 615
BspFNI	CGCG	3 cut(s)	555, 608, 758
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	4 cut(s)	599, 713, 849, 943
BspPI	GGATC	3 cut(s)	214, 633, 658
BspT104I	TTCGAA	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	496, 586, 785
BssAI	RCCGGY	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	304, 423, 722
BssMI	GATC	7 cut(s)	206, 280, 354, 625, 663, 793, 864
BssNI	GRCGYC	1 cut(s)	771
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	5 cut(s)	16, 37, 97, 308, 333
BstACI	GRCGYC	1 cut(s)	771
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	4 cut(s)	543, 657, 691, 748
BstDEI	CTNAG	3 cut(s)	69, 270, 602
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	314, 735
BstFNI	CGCG	3 cut(s)	555, 608, 758
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	6 cut(s)	48, 522, 555, 596, 608, 760
BstKTI	GATC	7 cut(s)	209, 283, 357, 628, 666, 796, 867
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	7 cut(s)	206, 280, 354, 625, 663, 793, 864
BstMWI	GCNNNNNNNGC	6 cut(s)	591, 619, 647, 656, 724, 910
BstPAI	GACNNNNGTC	1 cut(s)	937
BstSCI	CCNGG	1 cut(s)	722
BstSFI	CTRYAG	2 cut(s)	210, 636
BstUI	CGCG	3 cut(s)	555, 608, 758
BstV2I	GAAGAC	3 cut(s)	165, 457, 462
BstX2I	RGATCY	2 cut(s)	206, 625
BstYI	RGATCY	2 cut(s)	206, 625
BsuRI	GGCC	2 cut(s)	585, 899
BtgI	CCRYGG	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	667
BtrI	CACGTC	1 cut(s)	990
BtsCI	GGATG	2 cut(s)	314, 735
BtsI	GCAGTG	2 cut(s)	617, 676
BtsIMutI	CAGTG	4 cut(s)	228, 329, 617, 676
BveI	ACCTGC	4 cut(s)	599, 713, 849, 943
Cac8I	GCNNGC	4 cut(s)	543, 657, 691, 748
CfoI	GCGC	6 cut(s)	48, 522, 555, 596, 608, 760
Cfr10I	RCCGGY	1 cut(s)	516
CseI	GACGC	4 cut(s)	597, 648, 790, 927
CviAII	CATG	2 cut(s)	63, 292
DdeI	CTNAG	3 cut(s)	69, 270, 602
DpnI	GATC	7 cut(s)	208, 282, 356, 627, 665, 795, 866
DpnII	GATC	7 cut(s)	206, 280, 354, 625, 663, 793, 864
Eco130I	CCWWGG	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	471, 521
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	2 cut(s)	66, 295
FaiI	YATR	5 cut(s)	64, 143, 293, 311, 838
FatI	CATG	2 cut(s)	62, 291
FauI	CCCGC	4 cut(s)	660, 893, 918, 926
FbaI	TGATCA	2 cut(s)	280, 354
FblI	GTMKAC	1 cut(s)	99
FokI	GGATG	2 cut(s)	301, 722
FspBI	CTAG	2 cut(s)	488, 890
FspI	TGCGCA	1 cut(s)	595
GlaI	GCGC	6 cut(s)	47, 521, 554, 595, 607, 759
GsaI	CCCAGC	2 cut(s)	671, 718
HaeII	RGCGCY	1 cut(s)	523
HaeIII	GGCC	2 cut(s)	585, 899
HapII	CCGG	3 cut(s)	517, 623, 724
HgaI	GACGC	4 cut(s)	597, 648, 790, 927
HhaI	GCGC	6 cut(s)	48, 522, 555, 596, 608, 760
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	2 cut(s)	66, 295
Hin6I	GCGC	6 cut(s)	46, 520, 553, 594, 606, 758
HinP1I	GCGC	6 cut(s)	46, 520, 553, 594, 606, 758
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	5 cut(s)	145, 245, 384, 458, 816
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	3 cut(s)	517, 623, 724
HphI	GGTGA	2 cut(s)	353, 580
Hpy166II	GTNNAC	2 cut(s)	40, 100
Hpy188I	TCNGA	5 cut(s)	72, 150, 244, 250, 451
Hpy188III	TCNNGA	2 cut(s)	115, 358
Hpy8I	GTNNAC	2 cut(s)	40, 100
Hpy99I	CGWCG	5 cut(s)	613, 664, 773, 825, 865
HpyAV	CCTTC	4 cut(s)	545, 789, 865, 924
HpyCH4III	ACNGT	5 cut(s)	16, 37, 97, 308, 333
HpyCH4IV	ACGT	2 cut(s)	771, 989
HpyF10VI	GCNNNNNNNGC	6 cut(s)	591, 619, 647, 656, 724, 910
HpyF3I	CTNAG	3 cut(s)	69, 270, 602
HpySE526I	ACGT	2 cut(s)	771, 989
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	2 cut(s)	66, 295
HspAI	GCGC	6 cut(s)	46, 520, 553, 594, 606, 758
Ksp22I	TGATCA	2 cut(s)	280, 354
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	7 cut(s)	206, 280, 354, 625, 663, 793, 864
LmnI	GCTCC	1 cut(s)	836
LweI	GCATC	5 cut(s)	157, 323, 409, 517, 690
MaeI	CTAG	2 cut(s)	488, 890
MaeII	ACGT	2 cut(s)	771, 989
MaeIII	GTNAC	4 cut(s)	16, 31, 341, 498
MalI	GATC	7 cut(s)	208, 282, 356, 627, 665, 795, 866
MboI	GATC	7 cut(s)	206, 280, 354, 625, 663, 793, 864
MboII	GAAGA	6 cut(s)	170, 231, 309, 457, 464, 467
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	2 cut(s)	206, 625
MluCI	AATT	6 cut(s)	7, 78, 181, 187, 255, 321
MlyI	GAGTC	2 cut(s)	393, 452
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	7 cut(s)	148, 244, 574, 596, 624, 815, 822
MseI	TTAA	2 cut(s)	39, 186
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	3 cut(s)	517, 623, 724
MspR9I	CCNGG	1 cut(s)	724
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	48, 271
MvnI	CGCG	3 cut(s)	555, 608, 758
MwoI	GCNNNNNNNGC	6 cut(s)	591, 619, 647, 656, 724, 910
NciI	CCSGG	1 cut(s)	724
NdeII	GATC	7 cut(s)	206, 280, 354, 625, 663, 793, 864
NlaIII	CATG	2 cut(s)	66, 295
NmuCI	GTSAC	3 cut(s)	16, 341, 498
NsbI	TGCGCA	1 cut(s)	595
NspV	TTCGAA	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	599
PctI	GAATGC	2 cut(s)	48, 271
PfeI	GAWTC	3 cut(s)	145, 245, 816
PflFI	GACNNNGTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	310
PleI	GAGTC	2 cut(s)	392, 452
PpsI	GAGTC	2 cut(s)	392, 452
PshAI	GACNNNNGTC	1 cut(s)	937
PspFI	CCCAGC	2 cut(s)	667, 714
PstI	CTGCAG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	206, 625
PsyI	GACNNNGTC	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	39, 186
Sau3AI	GATC	7 cut(s)	206, 280, 354, 625, 663, 793, 864
SchI	GAGTC	2 cut(s)	393, 452
ScrFI	CCNGG	1 cut(s)	724
SfaNI	GCATC	5 cut(s)	157, 323, 409, 517, 690
SfcI	CTRYAG	2 cut(s)	210, 636
SfuI	TTCGAA	1 cut(s)	192
SgrAI	CRCCGGYG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	6 cut(s)	7, 78, 181, 187, 255, 321
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	488, 890
StyD4I	CCNGG	1 cut(s)	722
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	5 cut(s)	16, 37, 97, 308, 333
TaiI	ACGT	2 cut(s)	774, 992
TaqI	TCGA	5 cut(s)	192, 662, 796, 814, 863
TasI	AATT	6 cut(s)	7, 78, 181, 187, 255, 321
TauI	GCSGC	4 cut(s)	689, 899, 924, 927
TfiI	GAWTC	3 cut(s)	145, 245, 816
Tru1I	TTAA	2 cut(s)	39, 186
Tru9I	TTAA	2 cut(s)	39, 186
TscAI	CASTG	4 cut(s)	228, 336, 624, 683
TseFI	GTSAC	3 cut(s)	16, 341, 498
Tsp45I	GTSAC	3 cut(s)	16, 341, 498
TspDTI	ATGAA	3 cut(s)	17, 225, 280
TspGWI	ACGGA	4 cut(s)	35, 389, 728, 809
TspRI	CASTG	4 cut(s)	228, 336, 624, 683
Tth111I	GACNNNGTC	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	2 cut(s)	488, 890
ZraI	GACGTC	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.