Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Forward (+)

28527277 .. 28534101

Gene Structure 6825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG129900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2913 bp

ATGGGGGTTCCATCTTTTTTTCGTTGGTTGGTAAACAAGTACCCTAAAGTGGTGGTGAAAGCCATTGAAGCGGGAGGGGATCAGTTTCTAGATGCAAGCTTGCCAAACCCAAACGGCATAGAGTTCGATAACCTGTTTCTAGACATGAATGGGATTATCCATCCCTGCTTTCACCCGGAAGAAGACGATGATGATGGTTATGGACTAGCACCACCAAGAACTTATGAAGATGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATGGAGTTGCTCCGAGGGCTAAAATGAATCAACAGCGCGCCAGGCGTTTTAAGTCGGCAATGGACAAGAATCTTGCTGAGGCTGAAGGAGAGAAACTAAGACAGCAATTTGAAAAGGAAGGGAAAAAAATCCTACTAGAACAGGAGTCCGAAGTTTCTGATTCTAATATAATCACCCCAGGAACAGATTTCATGTACAAGTTATCCAAGGCTCTTCATAGCTACATCAATCTACGTTTAAGCCAAGATTCAGGCTGGAGGGACATCAAGGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGATGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGCATGGTCTGGATGCAGATCTTATAATGTTATCTTTGGCAACACATGAAGTTCACTTTTCCATACTAAGAGAGGAGCAACCTGCAAACAGTCAATTGACAATCTCATCTGCAATATCAGACAAAAGAACAGCGTACATGATGAAAAAGCGATATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAATGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGTATAATTGATGATTTCATCTTTATATGTTTCTTCGCGGGAAATGATTTTTTACCCCACATGCCGACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCAGGTTCATGACAAGAAGTTGGGGTACATCAAACTATCTAGAGTTGAGAAATTTGTTCTCCTTATTGGAGCATTTGAAGAGAAAATATTCAAGAAAAGATCAGATATACGAGAGCGTAAACTCAGACGTCTTTGCTATAACAATGATTCGATAGAGGAAGACATTGATGCTGGAAGTTCAAACTTTAATTTTGAGGCAATTGAAGGATCTGCAGTTGTTTCAGCTGATAACGTTTCATCTTCCGAAATAGTGGAAAACACGAAGGAATTCAAGCAAAAATTGAAGGCCAGCATTAGAAGAAAATCTGATCTGTTTAGGAATGGTAAAATCACCACTGACAAAGTACGATTGGGTGCTACAGGATTCAAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCCGGGGGAGATTGAAAGCAAAAGGAAGGAAGTAGTCAAAAGCTACACAGAAGGACTGCTCTGGGTTCTTTTATACTACTTTTCCGGTCCCCCATCGTGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAGCCCAGGTCAAACCACAATTTCAGAAAGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGCGCTCATGCACTTCCTAAGGATTATCGGACACTTATGACGGAAGAGTGTTCCACAATCATTGATTTTTACCCTTCTGACTTCGAAATTGACATGGATGGGAAGAGATTTACGTGGCAGGGTATCTGCAAACTTCCCTTTGTGGAAGAATCCCGACTTCTACAGGAGACCAGAAAATTGGAAAAGGAACTAATGGCAGAAGAAATTGACAGGAATGCTGAGAAACTTGATCAGTTATTCATGCGATGCACCCACGGTATGGCATCACAAATTGTTTCACTGTCTAATGGTGACAATCAGTCGATCAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCTTCAGCTTGATGACAATGATGCCAATGTCAAAGAAAGCGATGATAGCTCTGAAGAAGACTCTGTCTTATGTGCCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCGTTTACTTGATGGTGTACAACATCCTACCAAGACAATCAATGAACAAGAGCTTATGGAAACAATTCTATGGCATGAATGCCAGGGAAATGTGCCCACCCTCAGCATCCAGCAAGTTCAGGAAAGGTTTAGAAAACCAAATGATTTGGGAAATGCAAGTTTTCACAATGGTAAATTCACGTCAAGCTATCCTGCCAATTCAGTTCACAAATTTGCTGGTTCTGGATGGGGCTGTGGTAGAGGAGCAAATGGTAGTTCTAATTCAGGGGACCGAGTTTATGCTCCAAAAGGAATATCCAGTGGTCAAAGAGTAGTGTCATCTCCTAGATCATATTATTCCAAGGGTACCTCAGATTACAGAAAAGGCACATTACAACACGGCTTCAGGAAATTAAATATATCAGAGTCAGGCCAATGCTGGAGGCCTAATGGAAGGGGAGTTCAGTCATTGAATAATGATTTATGGCCATCTAGAAATAGTATCTCTCAAGACAGAAACTTTGCTGGTCATGGTTCACAGTCCTATCATACTTGGGGCCGTGGCCGAGGGCAACACAATTCGTGGCAGCACTCCTATCCATTTGCTGGTACAGGTAGAGGCCAGCAAGACCCTTGGACACACACCCGGCCTCATTTTGCTGCTAACCGTTTATCATCACATGCCGGTGGAAGAGGAAACTTTGTTCAACGTGGTCATGTAGAAAGTCGAATGGGCAGTGGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

970

Amino Acids

110.59

Weight (kDa)

7.02

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 255	3.2e-101	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	307 - 746	6.6e-150	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AatII	GACGTC	1 cut(s)	1222
Acc36I	ACCTGC	1 cut(s)	778
Acc65I	GGTACC	1 cut(s)	2531
AccB1I	GGYRCC	1 cut(s)	2531
AccB7I	CCANNNNNTGG	2 cut(s)	1987, 2771
AccI	GTMKAC	1 cut(s)	1044
AccII	CGCG	2 cut(s)	348, 971
AciI	CCGC	3 cut(s)	71, 679, 971
AclI	AACGTT	1 cut(s)	1323
AclWI	GGATC	4 cut(s)	87, 662, 896, 1306
AcoI	YGGCCR	2 cut(s)	2651, 2728
AcsI	RAATTY	7 cut(s)	1008, 1055, 1142, 1358, 1481, 2360, 2396
AcuI	CTGAAG	4 cut(s)	414, 2063, 2148, 2554
AcyI	GRCGYC	1 cut(s)	1219
AfaI	GTAC	8 cut(s)	41, 506, 824, 1118, 1437, 2205, 2533, 2776
AfeI	AGCGCT	1 cut(s)	1732
AfiI	CCNNNNNNNGG	6 cut(s)	49, 611, 1593, 1654, 1987, 2771
AhdI	GACNNNNNGTC	1 cut(s)	2026
AjiI	CACGTC	1 cut(s)	2367
AjnI	CCWGG	5 cut(s)	350, 487, 604, 1653, 2268
AloI	GAACNNNNNNTCC	4 cut(s)	2610, 2642, 2853, 2885
Alw26I	GTCTC	1 cut(s)	1889
AlwI	GGATC	4 cut(s)	87, 662, 896, 1306
AlwNI	CAGNNNCTG	1 cut(s)	850
Ama87I	CYCGRG	1 cut(s)	1498
Aor51HI	AGCGCT	1 cut(s)	1732
AoxI	GGCC	9 cut(s)	1377, 1645, 2596, 2609, 2651, 2722, 2728, 2785, 2813
ApeKI	GCWGC	2 cut(s)	2752, 2825
ApoI	RAATTY	7 cut(s)	1008, 1055, 1142, 1358, 1481, 2360, 2396
ArsI	GACNNNNNNTTYG	2 cut(s)	2669, 2701
Asp700I	GAANNNNTTC	4 cut(s)	1055, 1178, 1358, 2250
Asp718I	GGTACC	1 cut(s)	2531
AspLEI	GCGC	3 cut(s)	348, 350, 1733
AspS9I	GGNCC	5 cut(s)	1583, 1622, 1645, 2455, 2722
AsuC2I	CCSGG	4 cut(s)	176, 1499, 1500, 2812
AsuHPI	GGTGA	6 cut(s)	67, 164, 475, 635, 1414, 2030
AsuII	TTCGAA	2 cut(s)	249, 1812
AvaI	CYCGRG	1 cut(s)	1498
AvaII	GGWCC	3 cut(s)	1583, 1622, 2455
AxyI	CCTNAGG	1 cut(s)	1746
BaeGI	GKGCMC	2 cut(s)	2152, 2283
BalI	TGGCCA	1 cut(s)	2653
BanI	GGYRCC	1 cut(s)	2531
BarI	GAAGNNNNNNTAC	2 cut(s)	1100, 1132
BbsI	GAAGAC	4 cut(s)	189, 226, 1257, 2139
BbvCI	CCTCAGC	2 cut(s)	387, 2288
BbvI	GCAGC	2 cut(s)	2764, 2812
BccI	CCATC	9 cut(s)	19, 168, 188, 305, 1597, 1820, 2192, 2406, 2662
BceAI	ACGGC	3 cut(s)	130, 2581, 2709
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 2168, 2202
BciT130I	CCWGG	5 cut(s)	352, 489, 606, 1655, 2270
BclI	TGATCA	1 cut(s)	1957
BcnI	CCSGG	4 cut(s)	176, 1499, 1500, 2812
BcoDI	GTCTC	1 cut(s)	1889
BfaI	CTAG	8 cut(s)	89, 140, 206, 446, 1131, 1649, 2511, 2658
BfmI	CTRYAG	4 cut(s)	1302, 1449, 1695, 1889
BfoI	RGCGCY	1 cut(s)	1734
BfuAI	ACCTGC	1 cut(s)	778
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	2 cut(s)	2753, 2826
BlsI	GCNGC	2 cut(s)	2754, 2827
Bme1390I	CCNGG	9 cut(s)	176, 352, 489, 606, 1499, 1500, 1655, 2270, 2812
Bme18I	GGWCC	3 cut(s)	1583, 1622, 2455
BmeRI	GACNNNNNGTC	1 cut(s)	2026
BmeT110I	CYCGRG	1 cut(s)	1498
BmgBI	CACGTC	1 cut(s)	2367
BmgT120I	GGNCC	5 cut(s)	1583, 1622, 1645, 2455, 2722
BmiI	GGNNCC	6 cut(s)	9, 1585, 1681, 2456, 2533, 2723
BmrFI	CCNGG	9 cut(s)	176, 352, 489, 606, 1499, 1500, 1655, 2270, 2812
BmsI	GCATC	8 cut(s)	82, 583, 691, 1249, 1964, 2000, 2086, 2301
BpiI	GAAGAC	4 cut(s)	189, 226, 1257, 2139
BpmI	CTGGAG	3 cut(s)	586, 899, 2626
Bpu10I	CCTNAGC	2 cut(s)	387, 2288
Bpu14I	TTCGAA	2 cut(s)	249, 1812
BpuEI	CTTGAG	2 cut(s)	950, 2658
BpuMI	CCSGG	4 cut(s)	176, 1499, 1500, 2812
BsaAI	YACGTR	1 cut(s)	1842
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	1219
BsaI	GGTCTC	1 cut(s)	1889
BsaWI	WCCGGW	1 cut(s)	1580
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 611, 1593, 1654, 1987, 2771
Bse118I	RCCGGY	1 cut(s)	2849
Bse1I	ACTGG	1 cut(s)	2484
Bse21I	CCTNAGG	1 cut(s)	1746
Bse3DI	GCAATG	2 cut(s)	375, 682
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	5 cut(s)	352, 489, 606, 1655, 2270
BseGI	GGATG	6 cut(s)	160, 706, 1831, 2209, 2292, 2417
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	6 cut(s)	49, 611, 1593, 1654, 1987, 2771
BseMI	GCAATG	2 cut(s)	375, 682
BseMII	CTCAG	6 cut(s)	378, 900, 1228, 1938, 2302, 2550
BseNI	ACTGG	1 cut(s)	2484
BsePI	GCGCGC	1 cut(s)	346
BseRI	GAGGAG	2 cut(s)	776, 2442
BseSI	GKGCMC	2 cut(s)	2152, 2283
BseXI	GCAGC	2 cut(s)	2764, 2812
Bsh1236I	CGCG	2 cut(s)	348, 971
BshFI	GGCC	9 cut(s)	1379, 1647, 2598, 2611, 2653, 2724, 2730, 2787, 2815
BshNI	GGYRCC	1 cut(s)	2531
BsiHKCI	CYCGRG	1 cut(s)	1498
BsiSI	CCGG	5 cut(s)	176, 1499, 1581, 2812, 2850
BslFI	GGGAC	3 cut(s)	584, 1569, 2468
BslI	CCNNNNNNNGG	6 cut(s)	49, 611, 1593, 1654, 1987, 2771
BsmAI	GTCTC	1 cut(s)	1889
BsmFI	GGGAC	3 cut(s)	584, 1569, 2468
BsmI	GAATGC	2 cut(s)	1948, 2270
BsnI	GGCC	9 cut(s)	1379, 1647, 2598, 2611, 2653, 2724, 2730, 2787, 2815
Bso31I	GGTCTC	1 cut(s)	1889
BsoBI	CYCGRG	1 cut(s)	1498
Bsp119I	TTCGAA	2 cut(s)	249, 1812
Bsp1286I	GDGCHC	2 cut(s)	2152, 2283
Bsp1407I	TGTACA	2 cut(s)	504, 2203
BspACI	CCGC	3 cut(s)	71, 679, 971
BspANI	GGCC	9 cut(s)	1379, 1647, 2598, 2611, 2653, 2724, 2730, 2787, 2815
BspCNI	CTCAG	6 cut(s)	379, 901, 1227, 1939, 2301, 2549
BspFNI	CGCG	2 cut(s)	348, 971
BspHI	TCATGA	2 cut(s)	1012, 1099
BspLI	GGNNCC	6 cut(s)	9, 1585, 1681, 2456, 2533, 2723
BspMAI	CTGCAG	1 cut(s)	1306
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	4 cut(s)	87, 662, 896, 1306
BspQI	GCTCTTC	1 cut(s)	528
BspT104I	TTCGAA	2 cut(s)	249, 1812
BspT107I	GGYRCC	1 cut(s)	2531
BspTNI	GGTCTC	1 cut(s)	1889
BsrDI	GCAATG	2 cut(s)	375, 682
BsrFI	RCCGGY	1 cut(s)	2849
BsrGI	TGTACA	2 cut(s)	504, 2203
BsrI	ACTGG	1 cut(s)	2484
BssAI	RCCGGY	1 cut(s)	2849
BssHII	GCGCGC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	1219
BssT1I	CCWWGG	4 cut(s)	284, 516, 2526, 2798
Bst2UI	CCWGG	5 cut(s)	352, 489, 606, 1655, 2270
Bst4CI	ACNGT	7 cut(s)	655, 779, 1042, 1985, 2010, 2706, 2834
Bst6I	CTCTTC	5 cut(s)	528, 1164, 1767, 1826, 2851
BstACI	GRCGYC	1 cut(s)	1219
BstAUI	TGTACA	2 cut(s)	504, 2203
BstBAI	YACGTR	1 cut(s)	1842
BstBI	TTCGAA	2 cut(s)	249, 1812
BstC8I	GCNNGC	6 cut(s)	97, 101, 348, 689, 1381, 2789
BstDEI	CTNAG	9 cut(s)	387, 407, 755, 909, 1214, 1746, 1947, 2288, 2536
BstDSI	CCRYGG	2 cut(s)	1981, 2725
BstENI	CCTNNNNNAGG	2 cut(s)	609, 1652
BstF5I	GGATG	6 cut(s)	160, 706, 1831, 2209, 2292, 2417
BstFNI	CGCG	2 cut(s)	348, 971
BstH2I	RGCGCY	1 cut(s)	1734
BstHHI	GCGC	3 cut(s)	348, 350, 1733
BstMAI	GTCTC	1 cut(s)	1889
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 889, 2121
BstNI	CCWGG	5 cut(s)	352, 489, 606, 1655, 2270
BstNSI	RCATGY	4 cut(s)	857, 892, 997, 2849
BstSCI	CCNGG	9 cut(s)	174, 350, 487, 604, 1497, 1498, 1653, 2268, 2810
BstSFI	CTRYAG	4 cut(s)	1302, 1449, 1695, 1889
BstSLI	GKGCMC	2 cut(s)	2152, 2283
BstUI	CGCG	2 cut(s)	348, 971
BstV1I	GCAGC	2 cut(s)	2764, 2812
BstV2I	GAAGAC	4 cut(s)	189, 226, 1257, 2139
BstX2I	RGATCY	2 cut(s)	706, 1298
BstXI	CCANNNNNNTGG	1 cut(s)	1906
BstYI	RGATCY	2 cut(s)	706, 1298
Bsu36I	CCTNAGG	1 cut(s)	1746
BsuRI	GGCC	9 cut(s)	1379, 1647, 2598, 2611, 2653, 2724, 2730, 2787, 2815
BtgI	CCRYGG	2 cut(s)	1981, 2725
BtgZI	GCGATG	2 cut(s)	1987, 2130
BtrI	CACGTC	1 cut(s)	2367
BtsCI	GGATG	6 cut(s)	160, 706, 1831, 2209, 2292, 2417
BtsI	GCAGTG	1 cut(s)	2908
BtsIMutI	CAGTG	5 cut(s)	1425, 2006, 2071, 2491, 2908
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	6 cut(s)	97, 101, 348, 689, 1381, 2789
CaiI	CAGNNNCTG	1 cut(s)	850
CciI	TCATGA	2 cut(s)	1012, 1099
CfoI	GCGC	3 cut(s)	348, 350, 1733
Cfr10I	RCCGGY	1 cut(s)	2849
Cfr13I	GGNCC	5 cut(s)	1583, 1622, 1645, 2455, 2722
Cfr9I	CCCGGG	1 cut(s)	1498
Csp6I	GTAC	8 cut(s)	40, 505, 823, 1117, 1436, 2204, 2532, 2775
CspCI	CAANNNNNGTGG	2 cut(s)	1771, 1806
CviQI	GTAC	8 cut(s)	40, 505, 823, 1117, 1436, 2204, 2532, 2775
DdeI	CTNAG	9 cut(s)	387, 407, 755, 909, 1214, 1746, 1947, 2288, 2536
DraI	TTTAAA	1 cut(s)	1690
DriI	GACNNNNNGTC	1 cut(s)	2026
EaeI	YGGCCR	2 cut(s)	2651, 2728
Eam1104I	CTCTTC	5 cut(s)	528, 1164, 1767, 1826, 2851
Eam1105I	GACNNNNNGTC	1 cut(s)	2026
EarI	CTCTTC	5 cut(s)	528, 1164, 1767, 1826, 2851
Eco130I	CCWWGG	4 cut(s)	284, 516, 2526, 2798
Eco147I	AGGCCT	1 cut(s)	2611
Eco31I	GGTCTC	1 cut(s)	1889
Eco32I	GATATC	1 cut(s)	842
Eco47I	GGWCC	3 cut(s)	1583, 1622, 2455
Eco47III	AGCGCT	1 cut(s)	1732
Eco57I	CTGAAG	4 cut(s)	414, 2063, 2148, 2554
Eco81I	CCTNAGG	1 cut(s)	1746
Eco88I	CYCGRG	1 cut(s)	1498
EcoNI	CCTNNNNNAGG	2 cut(s)	609, 1652
EcoO109I	RGGNCCY	1 cut(s)	1645
EcoRI	GAATTC	2 cut(s)	1055, 1358
EcoRII	CCWGG	5 cut(s)	350, 487, 604, 1653, 2268
EcoRV	GATATC	1 cut(s)	842
EcoT14I	CCWWGG	4 cut(s)	284, 516, 2526, 2798
ErhI	CCWWGG	4 cut(s)	284, 516, 2526, 2798
FaqI	GGGAC	3 cut(s)	584, 1569, 2468
FauI	CCCGC	3 cut(s)	64, 686, 964
FauNDI	CATATG	1 cut(s)	2181
FbaI	TGATCA	1 cut(s)	1957
FblI	GTMKAC	1 cut(s)	1044
Fnu4HI	GCNGC	2 cut(s)	2753, 2826
FokI	GGATG	6 cut(s)	147, 713, 1838, 2196, 2279, 2424
Fsp4HI	GCNGC	2 cut(s)	2753, 2826
FspBI	CTAG	8 cut(s)	89, 140, 206, 446, 1131, 1649, 2511, 2658
GlaI	GCGC	3 cut(s)	347, 349, 1732
GluI	GCNGC	2 cut(s)	2753, 2826
GsuI	CTGGAG	3 cut(s)	586, 899, 2626
HaeII	RGCGCY	1 cut(s)	1734
HaeIII	GGCC	9 cut(s)	1379, 1647, 2598, 2611, 2653, 2724, 2730, 2787, 2815
HapII	CCGG	5 cut(s)	176, 1499, 1581, 2812, 2850
HhaI	GCGC	3 cut(s)	348, 350, 1733
Hin1I	GRCGYC	1 cut(s)	1219
Hin6I	GCGC	3 cut(s)	346, 348, 1731
HinP1I	GCGC	3 cut(s)	346, 348, 1731
HindIII	AAGCTT	1 cut(s)	97
HpaII	CCGG	5 cut(s)	176, 1499, 1581, 2812, 2850
HphI	GGTGA	6 cut(s)	67, 164, 475, 635, 1414, 2030
Hpy166II	GTNNAC	8 cut(s)	34, 742, 1045, 1211, 2192, 2204, 2392, 2702
Hpy8I	GTNNAC	8 cut(s)	34, 742, 1045, 1211, 2192, 2204, 2392, 2702
HpyCH4III	ACNGT	7 cut(s)	655, 779, 1042, 1985, 2010, 2706, 2834
HpyCH4IV	ACGT	7 cut(s)	544, 640, 1219, 1323, 1841, 2366, 2875
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 889, 2121
HpyF3I	CTNAG	9 cut(s)	387, 407, 755, 909, 1214, 1746, 1947, 2288, 2536
HpySE526I	ACGT	7 cut(s)	544, 640, 1219, 1323, 1841, 2366, 2875
Hsp92I	GRCGYC	1 cut(s)	1219
HspAI	GCGC	3 cut(s)	346, 348, 1731
KpnI	GGTACC	1 cut(s)	2535
Ksp22I	TGATCA	1 cut(s)	1957
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	6 cut(s)	325, 763, 880, 1160, 2429, 2473
Lsp1109I	GCAGC	2 cut(s)	2764, 2812
LweI	GCATC	8 cut(s)	82, 583, 691, 1249, 1964, 2000, 2086, 2301
MaeI	CTAG	8 cut(s)	89, 140, 206, 446, 1131, 1649, 2511, 2658
MaeII	ACGT	7 cut(s)	544, 640, 1219, 1323, 1841, 2366, 2875
MaeIII	GTNAC	2 cut(s)	641, 2018
MfeI	CAATTG	3 cut(s)	782, 1023, 1290
MflI	RGATCY	2 cut(s)	706, 1298
MhlI	GDGCHC	2 cut(s)	2152, 2283
MlsI	TGGCCA	1 cut(s)	2653
MluNI	TGGCCA	1 cut(s)	2653
MlyI	GAGTC	3 cut(s)	464, 2129, 2600
Mox20I	TGGCCA	1 cut(s)	2653
MroXI	GAANNNNTTC	4 cut(s)	1055, 1178, 1358, 2250
MscI	TGGCCA	1 cut(s)	2653
MseI	TTAA	6 cut(s)	360, 548, 918, 1278, 1689, 2579
MslI	CAYNNNNRTG	2 cut(s)	1017, 2850
Msp20I	TGGCCA	1 cut(s)	2653
MspA1I	CMGCKG	1 cut(s)	1316
MspI	CCGG	5 cut(s)	176, 1499, 1581, 2812, 2850
MspR9I	CCNGG	9 cut(s)	176, 352, 489, 606, 1499, 1500, 1655, 2270, 2812
MunI	CAATTG	3 cut(s)	782, 1023, 1290
Mva1269I	GAATGC	2 cut(s)	1948, 2270
MvaI	CCWGG	5 cut(s)	352, 489, 606, 1655, 2270
MvnI	CGCG	2 cut(s)	348, 971
MwoI	GCNNNNNNNGC	5 cut(s)	68, 326, 352, 889, 2121
NciI	CCSGG	4 cut(s)	176, 1499, 1500, 2812
NdeI	CATATG	1 cut(s)	2181
NlaIV	GGNNCC	6 cut(s)	9, 1585, 1681, 2456, 2533, 2723
NmeAIII	GCCGAG	1 cut(s)	2756
NmuCI	GTSAC	2 cut(s)	641, 2018
NspI	RCATGY	4 cut(s)	857, 892, 997, 2849
NspV	TTCGAA	2 cut(s)	249, 1812
PagI	TCATGA	2 cut(s)	1012, 1099
PauI	GCGCGC	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	2611
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	2 cut(s)	1948, 2270
PdmI	GAANNNNTTC	4 cut(s)	1055, 1178, 1358, 2250
PfeI	GAWTC	9 cut(s)	337, 379, 470, 557, 1090, 1238, 1455, 1877, 2061
PflFI	GACNNNGTC	1 cut(s)	2138
PflMI	CCANNNNNTGG	2 cut(s)	1987, 2771
PkrI	GCNGC	2 cut(s)	2754, 2827
PleI	GAGTC	3 cut(s)	463, 2129, 2599
PpsI	GAGTC	3 cut(s)	463, 2129, 2599
Ppu21I	YACGTR	1 cut(s)	1842
PsiI	TTATAA	1 cut(s)	713
Psp1406I	AACGTT	1 cut(s)	1323
Psp6I	CCWGG	5 cut(s)	350, 487, 604, 1653, 2268
PspGI	CCWGG	5 cut(s)	350, 487, 604, 1653, 2268
PspN4I	GGNNCC	6 cut(s)	9, 1585, 1681, 2456, 2533, 2723
PspPI	GGNCC	5 cut(s)	1583, 1622, 1645, 2455, 2722
PstI	CTGCAG	1 cut(s)	1306
PstNI	CAGNNNCTG	1 cut(s)	850
PsuI	RGATCY	2 cut(s)	706, 1298
PsyI	GACNNNGTC	1 cut(s)	2138
PteI	GCGCGC	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	1316
RsaI	GTAC	8 cut(s)	41, 506, 824, 1118, 1437, 2205, 2533, 2776
RsaNI	GTAC	8 cut(s)	40, 505, 823, 1117, 1436, 2204, 2532, 2775
RseI	CAYNNNNRTG	2 cut(s)	1017, 2850
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	6 cut(s)	360, 548, 918, 1278, 1689, 2579
SatI	GCNGC	2 cut(s)	2753, 2826
Sau96I	GGNCC	5 cut(s)	1583, 1622, 1645, 2455, 2722
SchI	GAGTC	3 cut(s)	464, 2129, 2600
ScrFI	CCNGG	9 cut(s)	176, 352, 489, 606, 1499, 1500, 1655, 2270, 2812
SduI	GDGCHC	2 cut(s)	2152, 2283
SfaNI	GCATC	8 cut(s)	82, 583, 691, 1249, 1964, 2000, 2086, 2301
SfcI	CTRYAG	4 cut(s)	1302, 1449, 1695, 1889
SfuI	TTCGAA	2 cut(s)	249, 1812
SinI	GGWCC	3 cut(s)	1583, 1622, 2455
SmaI	CCCGGG	1 cut(s)	1500
SmiMI	CAYNNNNRTG	2 cut(s)	1017, 2850
SmlI	CTYRAG	2 cut(s)	929, 2673
SmoI	CTYRAG	2 cut(s)	929, 2673
SseBI	AGGCCT	1 cut(s)	2611
SsiI	CCGC	3 cut(s)	71, 679, 971
SspI	AATATT	4 cut(s)	244, 274, 1066, 1179
SspMI	CTAG	8 cut(s)	89, 140, 206, 446, 1131, 1649, 2511, 2658
StuI	AGGCCT	1 cut(s)	2611
StyD4I	CCNGG	9 cut(s)	174, 350, 487, 604, 1497, 1498, 1653, 2268, 2810
StyI	CCWWGG	4 cut(s)	284, 516, 2526, 2798
TaaI	ACNGT	7 cut(s)	655, 779, 1042, 1985, 2010, 2706, 2834
TaiI	ACGT	7 cut(s)	547, 643, 1222, 1326, 1844, 2369, 2878
TaqI	TCGA	6 cut(s)	126, 249, 1241, 1812, 2030, 2893
TaqII	GACCGA	1 cut(s)	2472
TatI	WGTACW	2 cut(s)	504, 2203
TfiI	GAWTC	9 cut(s)	337, 379, 470, 557, 1090, 1238, 1455, 1877, 2061
Tru1I	TTAA	6 cut(s)	360, 548, 918, 1278, 1689, 2579
Tru9I	TTAA	6 cut(s)	360, 548, 918, 1278, 1689, 2579
TscAI	CASTG	5 cut(s)	1432, 2013, 2071, 2491, 2908
TseFI	GTSAC	2 cut(s)	641, 2018
TseI	GCWGC	2 cut(s)	2752, 2825
Tsp45I	GTSAC	2 cut(s)	641, 2018
TspGWI	ACGGA	1 cut(s)	1784
TspMI	CCCGGG	1 cut(s)	1498
TspRI	CASTG	5 cut(s)	1432, 2013, 2071, 2491, 2908
Tth111I	GACNNNGTC	1 cut(s)	2138
Van91I	CCANNNNNTGG	2 cut(s)	1987, 2771
VpaK11BI	GGWCC	3 cut(s)	1583, 1622, 2455
XagI	CCTNNNNNAGG	2 cut(s)	609, 1652
XapI	RAATTY	7 cut(s)	1008, 1055, 1142, 1358, 1481, 2360, 2396
XbaI	TCTAGA	4 cut(s)	88, 139, 1130, 2657
XceI	RCATGY	4 cut(s)	857, 892, 997, 2849
XcmI	CCANNNNNNNNNTGG	2 cut(s)	689, 1596
XmaI	CCCGGG	1 cut(s)	1498
XmiI	GTMKAC	1 cut(s)	1044
XmnI	GAANNNNTTC	4 cut(s)	1055, 1178, 1358, 2250
XspI	CTAG	8 cut(s)	89, 140, 206, 446, 1131, 1649, 2511, 2658
ZraI	GACGTC	1 cut(s)	1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.