Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Reverse (-)

11427190 .. 11434412

Gene Structure 7223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G141200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2991 bp

ATGAAACAAGTAGAGCTCCAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGGGGGTGCCTTCTTTCTTCCGTTGGCTGGGCAACAAGTATCCCAAAGCGGTGGTCAAGGCCATTGTCGACCAGAGAGATGAGTCCACAAGCTCACCAAACCCAAATGGCATGGAGTTTGATAACCTTTATCTTGACATGAATGGGATTATCCATCCCTGCTTTCACCCGGAATCGGATGAAGATGGAGTGCAACCAACTAGTTTTGAAGAGGTGTTCATCAATATTTTTGAATATATTGATACACTTTTCAACATTGTTCGACCAAGGAAGCTTTTATACATGGCCATAGATGGAGTTGCTCCAAGGGCTAAAATGAATCAACAACGTGCCAGGCGTTTCAAGTCTGCCAAGGACAAGGAATTAGCTGATGCTGAAGAAGAGAAGCTGAGAAGACAGTTTGAATTGGAAGGCAAACAAGTGTTACAAAAAAAGGAAAACGAAGTCTCAGATTCAAATATAATCACCCCTGGAACTGATTTTATGTACAAATTGTCGAATGCTCTTGGCAGCTATATTAGTTTACGTTTGAGCAATGATTCAGGCTGGAGGCACATCAAGGTGATTCTTTCTGATGCCAATGTTCCTGGAGAAGGGGAACACAAAATAATGTCTTTCATACGCCAGCAGCGTAATTTTCCTTCGTATGATCCAAACACCCGCCATTGCTTGTATGGATTGGATGCAGATTTGATAATGTTAGCTTTGGCAACACATGAAGTTCATTTTTCCATATTGAGAGAGGATGTTCTAAACCAGGAGCAGCAACATGCAAACTGTCAATCTGTTCGAGAAATGACTCCGTCTTCTGTAAAGTCAGGCAACAGAAAAGCATCCATTGTAAAAAAGCCCTACCAGCTTTTGCATGTTTGGATTTTGAGGGAATATTTGGAGCTTGATATGCAAATCAATGATCCTCCTGAGAATTTCAAGTTTGATCTTGAGCGTATAATTGATGATTTTATATTTATGTGTTTTTTTGCTGGAAATGATTTTCTGCCCCACATGCCAACTTTGGAAATTCATGAGAATGCAATAGACTTGCTGATGACTATCTATAAGAAGGAATTCAAAAATCTCGGTGGTTATATGGTTGATATGCTCCGGCAGGTCAATGACAAGAAATCAGGATACATCAAACTATCCAGGGTTGAGAAATTTATTCTTCTTGTTGGTGCTTATGAAGACAAAATTTTCAAGAAAAGATCAGAACTACGTGAGCGTAAACTCAGACGTCTTTGCCTTAATAAAGATTCTCTAGAGGAAGAAATTGATGCTGGAAGTTCAGCTACTGATTCAAGCAGTACTTGTGCATTGCCTAATGGAGAAGAATCCGAAGCTCTGTCACTTGGGATGTTTGAAAATATGCATTCTCAAATAATAGAAAATACAAAGGAGTTTAAGCAGAAATTGAAAGATAGCATCAGAAGGAAATCTGATCTGTTTAAGAATGGTGATTTAGGGACGGACAAAGTACGATATGCTGCTGCAGGCTACAAGGAAAGATATTACAAATACAAATTTTCTGCAGAAGGGCCAGGGGATATTGAAAGCAAAAGAAAGGAAGTAGTTAAATACTACACTGAAGGACTGCTCTGGGTTCTCTTGTACTATTTTTCGGGTCCCCCATCATGGACATGGTTTTATCCTTTCCACTATGCGCCATTTGCGTCCGACCTAAAGGGCCTTGGTCAGGTGAAATCTAAGTTTGAAAAAGGTTCCCCATTCTTACCTATCGATACTCTCATGGCTGTGTTACCACCCAGAAGTGCTCATGCACTTCCGAAAGTTTACCAGACACTTATGACAGATGAGAGTTCTACCATCATTGACTTTTACCCTTCTGATTTTGAAATTGATATGGATGGGAAACGCTTTACATGGCAGGGCATTTGCAAACTTCCTTTTATAGAAGAAGAACGGCTTCTATCTGAAACGAGAAAGTTAGAGAAGGAGTTGGTGGGGGAAGACAGGGACAGGAATAAAGAGAAAGTTGATCAATTATTTGTGCTAAGCACAGACAATATGGCATCACAGATTGTCGCACTGTTTACAAAGGAAAACTGCCCCATCAAGATTGACAACAGTTTGTGTTCTGGAATTAGTGGTTTTTTGCGTCTTCATGAGAATGCTTCCAGTGTTAAAGGAGGAGATCATAAACTTCAAGAAGACTCTGTCTTATGCGTGGGATATGAGCTTCCAAACGATGGTCCACATGTGCCTCGTTTACTTGCTGGTGTAGAGTTTCCTGTCAAGACAATCACTGAAGACGATCTTATGGAGACAAAACTATGGCACGAATATCAGGGAAGCACACCCAGCTCCAGCAGTCAGCTTGTTCAGGAAAGGTTTAGAAAACCAGATAATATGGGAAATCAAGGCTTCCAGAACAATGGTAGATTCACTTCTAGCTCTCCGAATATGATACACAAATTTTCTGGCACTGGATGGGGTTGTGGTAGAGGGAAAGCAATTGCAAGTCCTGATTTTGGAGACCGATTTCATGCTCCAGGAAGAATACATTGTGAAAGAGTAGTGTCATCTGGCTCATATTCAGCGAACGGTGCAGTAGCATACAAAAAAGCCGCTCTTCATGAGACACCTGTTTGTAATGAAAAGTGGAGAGTTGCTGGTTCTGGTTCAGGAGATCAAATACGAACCCTTAGGGATTTGAACATATCGAAGTCGTCATCAAGCCAGGGCTGGAGGCCTAATGGAAGAGTTCAGTCAGCAAACAATGTTTTCTGGCCGTCTAGAAATGGCTTCACACCTGACACAAACCATGCTTGGCAACATGGTCAGTGCCGCGGTAGAGGCCATCAGGACTCCTCGAAGCATTATTCACCTTTTTCTGCTAACCGTTCATCCCAAGCCAGTGGAAGTGCGCACTTTGTTCCACGTAGTTGGGATACTGAAGGTAAGCCCCGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

997

Amino Acids

113.92

Weight (kDa)

7.15

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1294
Acc16I	TGCGCA	1 cut(s)	2943
Acc36I	ACCTGC	1 cut(s)	1156
AccB1I	GGYRCC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	2264
AccBSI	CCGCTC	1 cut(s)	2645
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	2865
AciI	CCGC	6 cut(s)	107, 718, 2643, 2863, 2865, 2983
AclWI	GGATC	2 cut(s)	701, 965
AcoI	YGGCCR	2 cut(s)	342, 2804
AcsI	RAATTY	7 cut(s)	982, 1077, 1124, 1214, 1248, 1577, 2489
AcuI	CTGAAG	4 cut(s)	453, 1662, 2343, 2991
AcyI	GRCGYC	1 cut(s)	1291
AfaI	GTAC	4 cut(s)	545, 1363, 1533, 1667
AfiI	CCNNNNNNNGG	7 cut(s)	85, 232, 650, 1689, 1750, 2264, 2546
AflIII	ACRYGT	1 cut(s)	2272
AhlI	ACTAGT	1 cut(s)	257
AjnI	CCWGG	8 cut(s)	389, 526, 643, 813, 1202, 1594, 2566, 2754
Alw21I	GWGCWC	2 cut(s)	18, 1831
Alw26I	GTCTC	4 cut(s)	508, 2333, 2544, 2648
AlwI	GGATC	2 cut(s)	701, 965
AlwNI	CAGNNNCTG	1 cut(s)	1349
AoxI	GGCC	7 cut(s)	117, 342, 1592, 1741, 2765, 2804, 2872
ApeKI	GCWGC	5 cut(s)	567, 685, 820, 1541, 1544
ApoI	RAATTY	7 cut(s)	982, 1077, 1124, 1214, 1248, 1577, 2489
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
Asp700I	GAANNNNTTC	2 cut(s)	1124, 1980
AspLEI	GCGC	2 cut(s)	1720, 2944
AspS9I	GGNCC	4 cut(s)	1592, 1679, 1741, 2267
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	7 cut(s)	144, 215, 514, 631, 1523, 1765, 2892
AvaII	GGWCC	2 cut(s)	1679, 2267
AxyI	CCTNAGG	1 cut(s)	2720
BalI	TGGCCA	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	18
BarI	GAAGNNNNNNTAC	8 cut(s)	320, 352, 682, 714, 1330, 1362, 2446, 2478
BbsI	GAAGAC	7 cut(s)	457, 855, 1248, 2031, 2168, 2232, 2331
Bbv12I	GWGCWC	2 cut(s)	18, 1831
BbvI	GCAGC	5 cut(s)	579, 697, 832, 1528, 1531
BceAI	ACGGC	2 cut(s)	1994, 2791
BciT130I	CCWGG	8 cut(s)	391, 528, 645, 815, 1204, 1596, 2568, 2756
BciVI	GTATCC	3 cut(s)	108, 1181, 2959
BclI	TGATCA	1 cut(s)	2053
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	4 cut(s)	508, 2333, 2544, 2648
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	4 cut(s)	258, 1316, 2466, 2811
BfmI	CTRYAG	2 cut(s)	1545, 1584
BfuAI	ACCTGC	1 cut(s)	1156
BfuI	GTATCC	3 cut(s)	108, 1181, 2959
BisI	GCNGC	7 cut(s)	568, 686, 821, 1542, 1545, 2643, 2863
BlpI	GCTNAGC	1 cut(s)	2069
BlsI	GCNGC	7 cut(s)	569, 687, 822, 1543, 1546, 2644, 2864
BmcAI	AGTACT	1 cut(s)	1363
Bme1390I	CCNGG	9 cut(s)	227, 391, 528, 645, 815, 1204, 1596, 2568, 2756
Bme18I	GGWCC	2 cut(s)	1679, 2267
BmgT120I	GGNCC	4 cut(s)	1592, 1679, 1741, 2267
BmiI	GGNNCC	4 cut(s)	66, 1680, 1681, 1777
BmrFI	CCNGG	9 cut(s)	227, 391, 528, 645, 815, 1204, 1596, 2568, 2756
BmsI	GCATC	7 cut(s)	418, 622, 730, 899, 1321, 1488, 2096
BpiI	GAAGAC	7 cut(s)	457, 855, 1248, 2031, 2168, 2232, 2331
BpmI	CTGGAG	5 cut(s)	625, 666, 2365, 2550, 2782
Bpu1102I	GCTNAGC	1 cut(s)	2069
BpuEI	CTTGAG	1 cut(s)	1019
BpuMI	CCSGG	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	1794
BsaAI	YACGTR	2 cut(s)	1274, 2957
BsaBI	GATNNNNATC	1 cut(s)	1109
BsaHI	GRCGYC	1 cut(s)	1291
BsaI	GGTCTC	1 cut(s)	2544
BsaJI	CCNNGG	9 cut(s)	323, 362, 408, 526, 1203, 1595, 1744, 2755, 2863
Bsc4I	CCNNNNNNNGG	7 cut(s)	85, 232, 650, 1689, 1750, 2264, 2546
Bse1I	ACTGG	3 cut(s)	2193, 2506, 2931
Bse21I	CCTNAGG	1 cut(s)	2720
Bse3DI	GCAATG	3 cut(s)	598, 721, 1370
Bse8I	GATNNNNATC	1 cut(s)	1109
BseBI	CCWGG	8 cut(s)	391, 528, 645, 815, 1204, 1596, 2568, 2756
BseCI	ATCGAT	1 cut(s)	1794
BseDI	CCNNGG	9 cut(s)	323, 362, 408, 526, 1203, 1595, 1744, 2755, 2863
BseGI	GGATG	9 cut(s)	211, 241, 745, 808, 890, 1416, 1927, 2510, 2921
BseJI	GATNNNNATC	1 cut(s)	1109
BseLI	CCNNNNNNNGG	7 cut(s)	85, 232, 650, 1689, 1750, 2264, 2546
BseMI	GCAATG	3 cut(s)	598, 721, 1370
BseMII	CTCAG	4 cut(s)	437, 519, 969, 1300
BseNI	ACTGG	3 cut(s)	2193, 2506, 2931
BseRI	GAGGAG	2 cut(s)	2220, 2875
BseXI	GCAGC	5 cut(s)	579, 697, 832, 1528, 1531
BseYI	CCCAGC	2 cut(s)	85, 2375
BsgI	GTGCAG	1 cut(s)	2643
Bsh1236I	CGCG	1 cut(s)	2865
BshFI	GGCC	7 cut(s)	119, 344, 1594, 1743, 2767, 2806, 2874
BshNI	GGYRCC	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	1794
BsiHKAI	GWGCWC	2 cut(s)	18, 1831
BsiSI	CCGG	2 cut(s)	227, 1162
BslFI	GGGAC	3 cut(s)	1534, 1665, 2045
BslI	CCNNNNNNNGG	7 cut(s)	85, 232, 650, 1689, 1750, 2264, 2546
BsmAI	GTCTC	4 cut(s)	508, 2333, 2544, 2648
BsmFI	GGGAC	3 cut(s)	1534, 1665, 2045
BsmI	GAATGC	4 cut(s)	562, 1093, 1426, 2191
BsnI	GGCC	7 cut(s)	119, 344, 1594, 1743, 2767, 2806, 2874
Bso31I	GGTCTC	1 cut(s)	2544
Bsp1286I	GDGCHC	2 cut(s)	18, 1831
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	9 cut(s)	706, 970, 994, 1262, 1495, 2053, 2209, 2329, 2704
Bsp1720I	GCTNAGC	1 cut(s)	2069
BspACI	CCGC	6 cut(s)	107, 718, 2643, 2863, 2865, 2983
BspANI	GGCC	7 cut(s)	119, 344, 1594, 1743, 2767, 2806, 2874
BspCNI	CTCAG	4 cut(s)	438, 518, 970, 1299
BspDI	ATCGAT	1 cut(s)	1794
BspFNI	CGCG	1 cut(s)	2865
BspHI	TCATGA	3 cut(s)	1081, 2179, 2650
BspLI	GGNNCC	4 cut(s)	66, 1680, 1681, 1777
BspMAI	CTGCAG	2 cut(s)	1549, 1588
BspMI	ACCTGC	1 cut(s)	1156
BspPI	GGATC	2 cut(s)	701, 965
BspQI	GCTCTTC	1 cut(s)	2652
BspT107I	GGYRCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	2544
BsrBI	CCGCTC	1 cut(s)	2645
BsrDI	GCAATG	3 cut(s)	598, 721, 1370
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	2193, 2506, 2931
BssECI	CCNNGG	9 cut(s)	323, 362, 408, 526, 1203, 1595, 1744, 2755, 2863
BssMI	GATC	9 cut(s)	706, 970, 994, 1262, 1495, 2053, 2209, 2329, 2704
BssNI	GRCGYC	1 cut(s)	1291
BssT1I	CCWWGG	4 cut(s)	323, 362, 408, 1744
Bst2UI	CCWGG	8 cut(s)	391, 528, 645, 815, 1204, 1596, 2568, 2756
Bst4CI	ACNGT	6 cut(s)	456, 836, 2106, 2144, 2621, 2918
Bst6I	CTCTTC	4 cut(s)	261, 432, 2652, 2770
BstACI	GRCGYC	1 cut(s)	1291
BstAUI	TGTACA	1 cut(s)	543
BstBAI	YACGTR	2 cut(s)	1274, 2957
BstC8I	GCNNGC	2 cut(s)	683, 1549
BstDEI	CTNAG	7 cut(s)	446, 505, 978, 1286, 1761, 2069, 2720
BstDSI	CCRYGG	1 cut(s)	2863
BstENI	CCTNNNNNAGG	2 cut(s)	648, 1748
BstF5I	GGATG	9 cut(s)	211, 241, 745, 808, 890, 1416, 1927, 2510, 2921
BstFNI	CGCG	1 cut(s)	2865
BstHHI	GCGC	2 cut(s)	1720, 2944
BstKTI	GATC	9 cut(s)	709, 973, 997, 1265, 1498, 2056, 2212, 2332, 2707
BstMAI	GTCTC	4 cut(s)	508, 2333, 2544, 2648
BstMBI	GATC	9 cut(s)	706, 970, 994, 1262, 1495, 2053, 2209, 2329, 2704
BstMWI	GCNNNNNNNGC	8 cut(s)	365, 913, 958, 1063, 1724, 2376, 2621, 2871
BstNI	CCWGG	8 cut(s)	391, 528, 645, 815, 1204, 1596, 2568, 2756
BstNSI	RCATGY	4 cut(s)	830, 926, 1066, 2276
BstSCI	CCNGG	9 cut(s)	225, 389, 526, 643, 813, 1202, 1594, 2566, 2754
BstSFI	CTRYAG	2 cut(s)	1545, 1584
BstUI	CGCG	1 cut(s)	2865
BstV1I	GCAGC	5 cut(s)	579, 697, 832, 1528, 1531
BstV2I	GAAGAC	7 cut(s)	457, 855, 1248, 2031, 2168, 2232, 2331
BstXI	CCANNNNNNTGG	4 cut(s)	109, 2450, 2933, 2961
Bsu15I	ATCGAT	1 cut(s)	1794
Bsu36I	CCTNAGG	1 cut(s)	2720
BsuI	GTATCC	3 cut(s)	108, 1181, 2959
BsuRI	GGCC	7 cut(s)	119, 344, 1594, 1743, 2767, 2806, 2874
BsuTUI	ATCGAT	1 cut(s)	1794
BtgI	CCRYGG	1 cut(s)	2863
BtsCI	GGATG	9 cut(s)	211, 241, 745, 808, 890, 1416, 1927, 2510, 2921
BtsIMutI	CAGTG	7 cut(s)	1638, 2102, 2200, 2319, 2499, 2864, 2938
BveI	ACCTGC	1 cut(s)	1156
Cac8I	GCNNGC	2 cut(s)	683, 1549
CaiI	CAGNNNCTG	1 cut(s)	1349
CciI	TCATGA	3 cut(s)	1081, 2179, 2650
CfoI	GCGC	2 cut(s)	1720, 2944
Cfr13I	GGNCC	4 cut(s)	1592, 1679, 1741, 2267
Cfr42I	CCGCGG	1 cut(s)	2866
ClaI	ATCGAT	1 cut(s)	1794
CseI	GACGC	2 cut(s)	1716, 2162
Csp6I	GTAC	4 cut(s)	544, 1362, 1532, 1666
CviQI	GTAC	4 cut(s)	544, 1362, 1532, 1666
DdeI	CTNAG	7 cut(s)	446, 505, 978, 1286, 1761, 2069, 2720
DpnI	GATC	9 cut(s)	708, 972, 996, 1264, 1497, 2055, 2211, 2331, 2706
DpnII	GATC	9 cut(s)	706, 970, 994, 1262, 1495, 2053, 2209, 2329, 2704
EaeI	YGGCCR	2 cut(s)	342, 2804
Eam1104I	CTCTTC	4 cut(s)	261, 432, 2652, 2770
EarI	CTCTTC	4 cut(s)	261, 432, 2652, 2770
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	4 cut(s)	323, 362, 408, 1744
Eco147I	AGGCCT	1 cut(s)	2767
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	2544
Eco47I	GGWCC	2 cut(s)	1679, 2267
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	4 cut(s)	453, 1662, 2343, 2991
Eco81I	CCTNAGG	1 cut(s)	2720
EcoICRI	GAGCTC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	2 cut(s)	648, 1748
EcoO109I	RGGNCCY	2 cut(s)	1679, 1741
EcoRI	GAATTC	1 cut(s)	1124
EcoRII	CCWGG	8 cut(s)	389, 526, 643, 813, 1202, 1594, 2566, 2754
EcoT14I	CCWWGG	4 cut(s)	323, 362, 408, 1744
EcoT22I	ATGCAT	1 cut(s)	1428
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	4 cut(s)	323, 362, 408, 1744
FalI	AAGNNNNNCTT	8 cut(s)	1348, 1380, 1965, 1997, 2316, 2348, 2631, 2663
FaqI	GGGAC	3 cut(s)	1534, 1665, 2045
FauI	CCCGC	1 cut(s)	725
FbaI	TGATCA	1 cut(s)	2053
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	7 cut(s)	568, 686, 821, 1542, 1545, 2643, 2863
FokI	GGATG	9 cut(s)	198, 248, 752, 815, 877, 1423, 1934, 2517, 2908
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	7 cut(s)	568, 686, 821, 1542, 1545, 2643, 2863
FspAI	RTGCGCAY	1 cut(s)	2943
FspBI	CTAG	4 cut(s)	258, 1316, 2466, 2811
FspI	TGCGCA	1 cut(s)	2943
GlaI	GCGC	2 cut(s)	1719, 2943
GluI	GCNGC	7 cut(s)	568, 686, 821, 1542, 1545, 2643, 2863
GsaI	CCCAGC	2 cut(s)	89, 2379
GsuI	CTGGAG	5 cut(s)	625, 666, 2365, 2550, 2782
HaeIII	GGCC	7 cut(s)	119, 344, 1594, 1743, 2767, 2806, 2874
HapII	CCGG	2 cut(s)	227, 1162
HgaI	GACGC	2 cut(s)	1716, 2162
HhaI	GCGC	2 cut(s)	1720, 2944
Hin1I	GRCGYC	1 cut(s)	1291
Hin6I	GCGC	2 cut(s)	1718, 2942
HinP1I	GCGC	2 cut(s)	1718, 2942
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	329
HpaII	CCGG	2 cut(s)	227, 1162
HphI	GGTGA	7 cut(s)	144, 215, 514, 631, 1523, 1765, 2892
Hpy166II	GTNNAC	8 cut(s)	127, 144, 581, 1283, 1849, 2109, 2270, 2285
Hpy8I	GTNNAC	8 cut(s)	127, 144, 581, 1283, 1849, 2109, 2270, 2285
HpyCH4III	ACNGT	6 cut(s)	456, 836, 2106, 2144, 2621, 2918
HpyCH4IV	ACGT	5 cut(s)	385, 583, 1273, 1291, 2956
HpyF10VI	GCNNNNNNNGC	8 cut(s)	365, 913, 958, 1063, 1724, 2376, 2621, 2871
HpyF3I	CTNAG	7 cut(s)	446, 505, 978, 1286, 1761, 2069, 2720
HpySE526I	ACGT	5 cut(s)	385, 583, 1273, 1291, 2956
Hsp92I	GRCGYC	1 cut(s)	1291
HspAI	GCGC	2 cut(s)	1718, 2942
KflI	GGGWCCC	1 cut(s)	1679
Ksp22I	TGATCA	1 cut(s)	2053
KspI	CCGCGG	1 cut(s)	2866
Kzo9I	GATC	9 cut(s)	706, 970, 994, 1262, 1495, 2053, 2209, 2329, 2704
LguI	GCTCTTC	1 cut(s)	2652
LmnI	GCTCC	7 cut(s)	21, 364, 817, 949, 1164, 2384, 2569
Lsp1109I	GCAGC	5 cut(s)	579, 697, 832, 1528, 1531
LweI	GCATC	7 cut(s)	418, 622, 730, 899, 1321, 1488, 2096
MaeI	CTAG	4 cut(s)	258, 1316, 2466, 2811
MaeII	ACGT	5 cut(s)	385, 583, 1273, 1291, 2956
MaeIII	GTNAC	3 cut(s)	480, 1401, 1812
MalI	GATC	9 cut(s)	708, 972, 996, 1264, 1497, 2055, 2211, 2331, 2706
MbiI	CCGCTC	1 cut(s)	2645
MboI	GATC	9 cut(s)	706, 970, 994, 1262, 1495, 2053, 2209, 2329, 2704
MfeI	CAATTG	1 cut(s)	2529
MhlI	GDGCHC	2 cut(s)	18, 1831
MlsI	TGGCCA	1 cut(s)	344
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	4 cut(s)	149, 850, 2222, 2876
MmeI	TCCRAC	2 cut(s)	43, 1755
Mox20I	TGGCCA	1 cut(s)	344
Mph1103I	ATGCAT	1 cut(s)	1428
MroXI	GAANNNNTTC	2 cut(s)	1124, 1980
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	5 cut(s)	1302, 1458, 1503, 1629, 2199
MslI	CAYNNNNRTG	5 cut(s)	617, 1086, 1693, 1808, 2184
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	2 cut(s)	2865, 2985
MspI	CCGG	2 cut(s)	227, 1162
MspR9I	CCNGG	9 cut(s)	227, 391, 528, 645, 815, 1204, 1596, 2568, 2756
MunI	CAATTG	1 cut(s)	2529
Mva1269I	GAATGC	4 cut(s)	562, 1093, 1426, 2191
MvaI	CCWGG	8 cut(s)	391, 528, 645, 815, 1204, 1596, 2568, 2756
MvnI	CGCG	1 cut(s)	2865
MwoI	GCNNNNNNNGC	8 cut(s)	365, 913, 958, 1063, 1724, 2376, 2621, 2871
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	9 cut(s)	706, 970, 994, 1262, 1495, 2053, 2209, 2329, 2704
NlaIV	GGNNCC	4 cut(s)	66, 1680, 1681, 1777
NmuCI	GTSAC	1 cut(s)	1401
NsbI	TGCGCA	1 cut(s)	2943
NsiI	ATGCAT	1 cut(s)	1428
NspI	RCATGY	4 cut(s)	830, 926, 1066, 2276
PagI	TCATGA	3 cut(s)	1081, 2179, 2650
PceI	AGGCCT	1 cut(s)	2767
PciI	ACATGT	1 cut(s)	2272
PciSI	GCTCTTC	1 cut(s)	2652
PcsI	WCGNNNNNNNCGW	2 cut(s)	391, 685
PctI	GAATGC	4 cut(s)	562, 1093, 1426, 2191
PdmI	GAANNNNTTC	2 cut(s)	1124, 1980
PfeI	GAWTC	9 cut(s)	230, 376, 509, 596, 622, 1310, 1352, 1388, 2457
PflFI	GACNNNGTC	2 cut(s)	859, 2231
PflMI	CCANNNNNTGG	1 cut(s)	2264
PfoI	TCCNGGA	2 cut(s)	643, 2566
PkrI	GCNGC	7 cut(s)	569, 687, 822, 1543, 1546, 2644, 2864
PleI	GAGTC	4 cut(s)	148, 850, 2222, 2876
PpsI	GAGTC	4 cut(s)	148, 850, 2222, 2876
Ppu21I	YACGTR	2 cut(s)	1274, 2957
PpuMI	RGGWCCY	1 cut(s)	1679
PscI	ACATGT	1 cut(s)	2272
Psp124BI	GAGCTC	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	1679
Psp6I	CCWGG	8 cut(s)	389, 526, 643, 813, 1202, 1594, 2566, 2754
PspFI	CCCAGC	2 cut(s)	85, 2375
PspGI	CCWGG	8 cut(s)	389, 526, 643, 813, 1202, 1594, 2566, 2754
PspN4I	GGNNCC	4 cut(s)	66, 1680, 1681, 1777
PspPI	GGNCC	4 cut(s)	1592, 1679, 1741, 2267
PspPPI	RGGWCCY	1 cut(s)	1679
PstI	CTGCAG	2 cut(s)	1549, 1588
PstNI	CAGNNNCTG	1 cut(s)	1349
PsyI	GACNNNGTC	2 cut(s)	859, 2231
RsaI	GTAC	4 cut(s)	545, 1363, 1533, 1667
RsaNI	GTAC	4 cut(s)	544, 1362, 1532, 1666
RseI	CAYNNNNRTG	5 cut(s)	617, 1086, 1693, 1808, 2184
SacI	GAGCTC	1 cut(s)	18
SacII	CCGCGG	1 cut(s)	2866
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	2652
SaqAI	TTAA	5 cut(s)	1302, 1458, 1503, 1629, 2199
SatI	GCNGC	7 cut(s)	568, 686, 821, 1542, 1545, 2643, 2863
Sau3AI	GATC	9 cut(s)	706, 970, 994, 1262, 1495, 2053, 2209, 2329, 2704
Sau96I	GGNCC	4 cut(s)	1592, 1679, 1741, 2267
ScaI	AGTACT	1 cut(s)	1363
SchI	GAGTC	4 cut(s)	149, 850, 2222, 2876
ScrFI	CCNGG	9 cut(s)	227, 391, 528, 645, 815, 1204, 1596, 2568, 2756
SduI	GDGCHC	2 cut(s)	18, 1831
SfaNI	GCATC	7 cut(s)	418, 622, 730, 899, 1321, 1488, 2096
SfcI	CTRYAG	2 cut(s)	1545, 1584
Sfr303I	CCGCGG	1 cut(s)	2866
SgrBI	CCGCGG	1 cut(s)	2866
SinI	GGWCC	2 cut(s)	1679, 2267
SmiMI	CAYNNNNRTG	5 cut(s)	617, 1086, 1693, 1808, 2184
SmlI	CTYRAG	1 cut(s)	998
SmoI	CTYRAG	1 cut(s)	998
SpeI	ACTAGT	1 cut(s)	257
SseBI	AGGCCT	1 cut(s)	2767
SsiI	CCGC	6 cut(s)	107, 718, 2643, 2863, 2865, 2983
SspI	AATATT	2 cut(s)	283, 944
SspMI	CTAG	4 cut(s)	258, 1316, 2466, 2811
SstI	GAGCTC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	2767
StyD4I	CCNGG	9 cut(s)	225, 389, 526, 643, 813, 1202, 1594, 2566, 2754
StyI	CCWWGG	4 cut(s)	323, 362, 408, 1744
TaaI	ACNGT	6 cut(s)	456, 836, 2106, 2144, 2621, 2918
TaiI	ACGT	5 cut(s)	388, 586, 1276, 1294, 2959
TaqI	TCGA	7 cut(s)	126, 319, 554, 847, 1794, 2738, 2888
TaqII	GACCGA	1 cut(s)	2568
TatI	WGTACW	3 cut(s)	543, 1361, 1665
TauI	GCSGC	2 cut(s)	2645, 2865
TfiI	GAWTC	9 cut(s)	230, 376, 509, 596, 622, 1310, 1352, 1388, 2457
Tru1I	TTAA	5 cut(s)	1302, 1458, 1503, 1629, 2199
Tru9I	TTAA	5 cut(s)	1302, 1458, 1503, 1629, 2199
TscAI	CASTG	7 cut(s)	1645, 2109, 2200, 2326, 2506, 2864, 2938
TseFI	GTSAC	1 cut(s)	1401
TseI	GCWGC	5 cut(s)	567, 685, 820, 1541, 1544
Tsp45I	GTSAC	1 cut(s)	1401
TspGWI	ACGGA	3 cut(s)	68, 849, 1538
TspRI	CASTG	7 cut(s)	1645, 2109, 2200, 2326, 2506, 2864, 2938
Tth111I	GACNNNGTC	2 cut(s)	859, 2231
Van91I	CCANNNNNTGG	1 cut(s)	2264
VpaK11BI	GGWCC	2 cut(s)	1679, 2267
XagI	CCTNNNNNAGG	2 cut(s)	648, 1748
XapI	RAATTY	7 cut(s)	982, 1077, 1124, 1214, 1248, 1577, 2489
XbaI	TCTAGA	2 cut(s)	1315, 2810
XceI	RCATGY	4 cut(s)	830, 926, 1066, 2276
XcmI	CCANNNNNNNNNTGG	2 cut(s)	728, 1692
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	2 cut(s)	1124, 1980
XspI	CTAG	4 cut(s)	258, 1316, 2466, 2811
ZraI	GACGTC	1 cut(s)	1292
ZrmI	AGTACT	1 cut(s)	1363
Zsp2I	ATGCAT	1 cut(s)	1428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.