Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003441.1

Orthogroup ID

OG0004246

Physical Location & Seq

Genomic Coordinates Forward (+)

14357 .. 21458

Gene Structure 7102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003441.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

atgctccgtctgacggcgcgtcttcggggcgtcgtcgtcggacgggtctgtgatggttctgggcactccggcgggggcttctgtcttaggcgcggcccgggaaaggtggatgagaggtggagggtggcttgggcagatctgtacgggtctgactttcttcagtcatgggcgatcacagggtttgagcggcatgggggtgttgttggtcgatggcgagatcaggggtcactgtctcctgcggtgatcgggttgatgcctgaggttgttgggttgggcagattggggcttcgatctcagggcagaggcgatcccgaaagggatctgtcacgcctagaggttcggcctcacctgttggcagagatcaatgggcggctgcgtgattatgcagggttgatggtgccagttcgttggaggaggatttggtggcggggttggacgcctggaactcattggaggcggagtgggtggccggattgggtgtctgctgccctggcatcctttggggagattggaggttgggccaagcctagggatttgggcccgtgctggtgggctgttgttgttggaaggaatgggcttcgtgctggtttatgcactctatgtgccttgtctgctctaggtaggctgcgagttccttgcatttgcaaatggtcgcaactttgtagtggcagtaacgtgtctgctctaggtaggtggcgagttccttgcttggtcaaatggtcgctgcctcctagtggtagggtgaaacttaatgtcactggatgtattttccagtggcaacatgatgggaaagctgtgcgtatggaaattatgctatgctcgggagaggatcagtttctagatgcaagcttgccaaacccaaatggcatagagttcgataacctgtttctagacatgaatgggattatccatccctgctttcatccggaagaagatgatgatgatggttatggacttgcaccgccaagaacttatgaagatgtcttcaacaatattttcgaatacattgatcggcttttcaatattgttagaccaaggaaactactctacattgccattgatggagttgctccgagggctaaaatgaatcaacagcgcgccaggcgttttaagtcggcaatggacaagaatcttgctgaggctgaagaagagaaactaagacagcaatttgaaaaggaagggaaaaaaatcctactagaacaggagtccgaagtttctgattctaatataatcacccctggaacggatttcatgtacaagttatccaaggctcttcaaagctacatcaatctacgtttaagccaagattcaggctggagggacatcaaggtaatactttctgatgccaatgttcctggggaaggagaacataaagtgatgtcgttcatatgtcaccagcgaactgttccttcttatgatccaaacacccgccattgcttgtatggtctggatgcggatcttataatgttgtctttggcaacacatgaagttcacctttccatactaagagagaatttactaatccaaaaccagcagcaacatgcaaacagtcaattgacaatttcatctgcaatatcagacaaaagaacagcgcacatgatgaaaaagccttatcagtttctgcatgtttggattttgagggaatatctggagcttgacatgcaaatcagtgatcctcctgagaactttaagtttgatcttgagcgtatcattgatgatttcatctttatatgtttcttcgtgggaaatgattttttaccccacatgccaacattggaaattcatgagggtgcaattgatttgctgatgacagtctacaagaaagaattcaagaatattggtggctatttggttgatatgattcaggttcatgacaagaagttggggtacatcaaactatctagagttgagaaatttgttctctttattggagcatttgaagagaaaatattcaagaaaagatcagatatacgagaacgtaaactcagacgtctttgctataacaatgattggatagaggaagacattgatgctggaaattcaaactttaatttcgaggcaattgaaggatctgcagttgtttcagtggataatgtttcatcttccaaaatagtggaaaacacaaaggaattcaagcaaaaattgaaggccagcattagaagaaaatctgatctgtttaggaatggtgattttggcactgacaaagtacgattgggtgctacaggattcaaagaaagatattacaaatgcaaattttctgctgaaagcccgggggagattgaaaacaaaaggaaggaagtagttaaaagctacacagaaggactgctctgggttcttttatactacttttccggccccccatcgtggaaatggttttatccttttcattatggaccatttgcctctgatatgaagggcctagctcaggtcaaaccacaatttgagaaaggttccccatttaaacctatagatacactcatggctgtcctgccaccaagaagcgctcacgcacttcctaaggattataggacacttatgatggaagagtgttccacaatcattgatttttacccttctgacttcgaaattgacatggatgggaagagatttacgtggcagggtatctgcaaacttccctttatagaagaatcccgacttctacatgagaccagaaaattggaaaaggaactaatggcagaagaaattgacaggaatgctgagaaacttgatcagttattcatgcgaagcacccacggtatggcatcacaaattgtttcactgtctaatggtgacaatcagtcgatcaagattgacaccaatttgagctttggaatcagtggttttatccggcagcttgatgacaatgatgccaaggtcaaagaaagagatgatagctctgaagaagactctgtcttatgtaccctctatgagcttcctaatacaagtctgcatatgcctcgtttacttgatggtgtacaacatccttccaagacaatcaatgaacacgagcttatggaaacagttctatggcatgaatgtcagggaaatgtgacctcccgcagcatccagcaagtacaggcaaggtttagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

1030

Amino Acids

118.04

Weight (kDa)

7.32

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18720 FvH4_7g18720 FvH4_7g18720 FvH4_7g18720
malus_domestica	MD00G1128400.v1.1 MD11G1172900.v1.1
prunus_persica	Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1 Prupe.6G141200_v2.0.a1
pyrus_communis	pycom11g14580 pycom520g00080
rosa_chinensis	RchiOBHm_Chr1g0334231 RchiOBHm_Chr5g0047421 RchiOBHm_Chr5g0047601 RchiOBHm_Chr5g0047631 RchiOBHm_Chr5g0047791 RchiOBHm_Chr5g0047991
rosa_multiflora	Rmu_sc0000148.1_g000001 Rmu_sc0000148.1_g000016 Rmu_sc0003441.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029700 Rroxscaffold_1G00033910
rosa_rugosa	Rorug05G0236400
rosa_samantha	Rh1CG129900 Rh5AG315300 Rh5AG315400 Rh5DG335300 Rh5DG335400
rosa_wichuraiana	Rw0G017980 Rw5G029460 Rw5G029520 Rw5G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1463
AatII	GACGTC	1 cut(s)	1993
AccB1I	GGYRCC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	2758
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	1815
AccII	CGCG	3 cut(s)	19, 93, 1098
AccIII	TCCGGA	1 cut(s)	925
AclWI	GGATC	7 cut(s)	302, 327, 837, 1412, 1464, 1667, 2077
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	7 cut(s)	1513, 1779, 1826, 1913, 2038, 2129, 2252
AcuI	CTGAAG	3 cut(s)	143, 1164, 2919
AcyI	GRCGYC	3 cut(s)	30, 437, 1990
AfaI	GTAC	7 cut(s)	143, 1256, 1889, 2208, 2920, 2976, 3075
AfeI	AGCGCT	1 cut(s)	2503
AfiI	CCNNNNNNNGG	9 cut(s)	13, 103, 528, 734, 1243, 1361, 2364, 2425, 2758
AflIII	ACRYGT	1 cut(s)	675
AhdI	GACNNNNNGTC	2 cut(s)	18, 2797
AjnI	CCWGG	5 cut(s)	439, 489, 1100, 1237, 1354
Alw26I	GTCTC	2 cut(s)	237, 2660
AlwI	GGATC	7 cut(s)	302, 327, 837, 1412, 1464, 1667, 2077
AlwNI	CAGNNNCTG	1 cut(s)	1621
Ama87I	CYCGRG	3 cut(s)	97, 820, 2269
Aor13HI	TCCGGA	1 cut(s)	925
Aor51HI	AGCGCT	1 cut(s)	2503
AoxI	GGCC	8 cut(s)	94, 341, 467, 519, 538, 2148, 2353, 2416
ApaI	GGGCCC	1 cut(s)	542
ApeKI	GCWGC	7 cut(s)	373, 485, 625, 724, 1534, 2851, 3060
ApoI	RAATTY	7 cut(s)	1513, 1779, 1826, 1913, 2038, 2129, 2252
Asp700I	GAANNNNTTC	3 cut(s)	1826, 1949, 3021
AspA2I	CCTAGG	1 cut(s)	527
AspLEI	GCGC	6 cut(s)	19, 93, 1098, 1100, 1594, 2504
AspS9I	GGNCC	7 cut(s)	95, 519, 538, 539, 2354, 2393, 2416
AsuC2I	CCSGG	4 cut(s)	98, 99, 2270, 2271
AsuHPI	GGTGA	8 cut(s)	253, 338, 754, 1225, 1385, 1484, 2198, 2801
AsuII	TTCGAA	2 cut(s)	999, 2583
AvaI	CYCGRG	3 cut(s)	97, 820, 2269
AvaII	GGWCC	1 cut(s)	2393
AvrII	CCTAGG	1 cut(s)	527
AxyI	CCTNAGG	2 cut(s)	258, 2517
BaeGI	GKGCMC	2 cut(s)	66, 542
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	542
BarI	GAAGNNNNNNTAC	2 cut(s)	1871, 1903
BauI	CACGAG	1 cut(s)	3005
BbsI	GAAGAC	4 cut(s)	14, 976, 2028, 2910
BbvCI	CCTCAGC	1 cut(s)	1137
BbvI	GCAGC	7 cut(s)	360, 472, 612, 711, 1546, 2863, 3072
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	8 cut(s)	618, 652, 687, 721, 856, 890, 2939, 2973
BciT130I	CCWGG	5 cut(s)	441, 491, 1102, 1239, 1356
BclI	TGATCA	1 cut(s)	2728
BcnI	CCSGG	4 cut(s)	98, 99, 2270, 2271
BcoDI	GTCTC	2 cut(s)	237, 2660
BfmI	CTRYAG	3 cut(s)	2073, 2220, 2466
BfoI	RGCGCY	1 cut(s)	2505
BglII	AGATCT	1 cut(s)	136
BlnI	CCTAGG	1 cut(s)	527
Bme1390I	CCNGG	9 cut(s)	98, 99, 441, 491, 1102, 1239, 1356, 2270, 2271
Bme18I	GGWCC	1 cut(s)	2393
BmeRI	GACNNNNNGTC	2 cut(s)	18, 2797
BmeT110I	CYCGRG	3 cut(s)	97, 820, 2269
BmgT120I	GGNCC	7 cut(s)	95, 519, 538, 539, 2354, 2393, 2416
BmiI	GGNNCC	4 cut(s)	399, 540, 2356, 2452
BmrFI	CCNGG	9 cut(s)	98, 99, 441, 491, 1102, 1239, 1356, 2270, 2271
BmsI	GCATC	9 cut(s)	243, 503, 832, 1333, 1441, 2020, 2771, 2857, 3072
BpiI	GAAGAC	4 cut(s)	14, 976, 2028, 2910
BpmI	CTGGAG	2 cut(s)	1336, 1670
Bpu10I	CCTNAGC	2 cut(s)	1137, 2424
Bpu14I	TTCGAA	2 cut(s)	999, 2583
BpuEI	CTTGAG	1 cut(s)	1721
BpuMI	CCSGG	4 cut(s)	98, 99, 2270, 2271
BsaAI	YACGTR	1 cut(s)	2613
BsaBI	GATNNNNATC	1 cut(s)	1455
BsaHI	GRCGYC	3 cut(s)	30, 437, 1990
BsaI	GGTCTC	1 cut(s)	2660
BsaWI	WCCGGW	1 cut(s)	925
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	9 cut(s)	13, 103, 528, 734, 1243, 1361, 2364, 2425, 2758
Bse1I	ACTGG	3 cut(s)	401, 763, 772
Bse21I	CCTNAGG	2 cut(s)	258, 2517
Bse3DI	GCAATG	3 cut(s)	1050, 1125, 1432
Bse8I	GATNNNNATC	1 cut(s)	1455
BseAI	TCCGGA	1 cut(s)	925
BseBI	CCWGG	5 cut(s)	441, 491, 1102, 1239, 1356
BseGI	GGATG	9 cut(s)	115, 494, 767, 910, 922, 1456, 2602, 2980, 3063
BseJI	GATNNNNATC	1 cut(s)	1455
BseLI	CCNNNNNNNGG	9 cut(s)	13, 103, 528, 734, 1243, 1361, 2364, 2425, 2758
BseMI	GCAATG	3 cut(s)	1050, 1125, 1432
BseMII	CTCAG	7 cut(s)	249, 308, 1128, 1671, 1999, 2438, 2709
BseNI	ACTGG	3 cut(s)	401, 763, 772
BsePI	GCGCGC	1 cut(s)	1096
BseRI	GAGGAG	1 cut(s)	427
BseSI	GKGCMC	2 cut(s)	66, 542
BseXI	GCAGC	7 cut(s)	360, 472, 612, 711, 1546, 2863, 3072
Bsh1236I	CGCG	3 cut(s)	19, 93, 1098
BshFI	GGCC	8 cut(s)	96, 343, 469, 521, 540, 2150, 2355, 2418
BshNI	GGYRCC	1 cut(s)	397
BsiHKCI	CYCGRG	3 cut(s)	97, 820, 2269
BsiSI	CCGG	7 cut(s)	69, 98, 470, 926, 2270, 2352, 2848
BslFI	GGGAC	1 cut(s)	1334
BslI	CCNNNNNNNGG	9 cut(s)	13, 103, 528, 734, 1243, 1361, 2364, 2425, 2758
BsmAI	GTCTC	2 cut(s)	237, 2660
BsmFI	GGGAC	1 cut(s)	1334
BsmI	GAATGC	1 cut(s)	2719
BsnI	GGCC	8 cut(s)	96, 343, 469, 521, 540, 2150, 2355, 2418
Bso31I	GGTCTC	1 cut(s)	2660
BsoBI	CYCGRG	3 cut(s)	97, 820, 2269
Bsp119I	TTCGAA	2 cut(s)	999, 2583
Bsp120I	GGGCCC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	66, 542
Bsp13I	TCCGGA	1 cut(s)	925
Bsp1407I	TGTACA	2 cut(s)	1254, 2974
BspANI	GGCC	8 cut(s)	96, 343, 469, 521, 540, 2150, 2355, 2418
BspCNI	CTCAG	7 cut(s)	250, 307, 1129, 1672, 1998, 2437, 2710
BspEI	TCCGGA	1 cut(s)	925
BspFNI	CGCG	3 cut(s)	19, 93, 1098
BspHI	TCATGA	2 cut(s)	1783, 1870
BspLI	GGNNCC	4 cut(s)	399, 540, 2356, 2452
BspMAI	CTGCAG	1 cut(s)	2077
BspPI	GGATC	7 cut(s)	302, 327, 837, 1412, 1464, 1667, 2077
BspQI	GCTCTTC	1 cut(s)	1278
BspT104I	TTCGAA	2 cut(s)	999, 2583
BspT107I	GGYRCC	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	2660
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	3 cut(s)	1050, 1125, 1432
BsrGI	TGTACA	2 cut(s)	1254, 2974
BsrI	ACTGG	3 cut(s)	401, 763, 772
BssHII	GCGCGC	1 cut(s)	1096
BssNI	GRCGYC	3 cut(s)	30, 437, 1990
BssSI	CACGAG	1 cut(s)	3005
BssT1I	CCWWGG	4 cut(s)	527, 1034, 1266, 2871
Bst2BI	CACGAG	1 cut(s)	3005
Bst2UI	CCWGG	5 cut(s)	441, 491, 1102, 1239, 1356
Bst4CI	ACNGT	7 cut(s)	231, 1405, 1550, 1813, 2756, 2781, 3022
Bst6I	CTCTTC	5 cut(s)	1143, 1278, 1935, 2538, 2597
BstACI	GRCGYC	3 cut(s)	30, 437, 1990
BstAUI	TGTACA	2 cut(s)	1254, 2974
BstBAI	YACGTR	1 cut(s)	2613
BstBI	TTCGAA	2 cut(s)	999, 2583
BstC8I	GCNNGC	4 cut(s)	847, 851, 1098, 2152
BstDSI	CCRYGG	1 cut(s)	2752
BstENI	CCTNNNNNAGG	2 cut(s)	1359, 2423
BstF5I	GGATG	9 cut(s)	115, 494, 767, 910, 922, 1456, 2602, 2980, 3063
BstFNI	CGCG	3 cut(s)	19, 93, 1098
BstH2I	RGCGCY	1 cut(s)	2505
BstHHI	GCGC	6 cut(s)	19, 93, 1098, 1100, 1594, 2504
BstMAI	GTCTC	2 cut(s)	237, 2660
BstMWI	GCNNNNNNNGC	5 cut(s)	491, 611, 1076, 1102, 1660
BstNI	CCWGG	5 cut(s)	441, 491, 1102, 1239, 1356
BstNSI	RCATGY	4 cut(s)	1544, 1628, 1663, 1768
BstSCI	CCNGG	9 cut(s)	96, 97, 439, 489, 1100, 1237, 1354, 2268, 2269
BstSFI	CTRYAG	3 cut(s)	2073, 2220, 2466
BstSLI	GKGCMC	2 cut(s)	66, 542
BstUI	CGCG	3 cut(s)	19, 93, 1098
BstV1I	GCAGC	7 cut(s)	360, 472, 612, 711, 1546, 2863, 3072
BstV2I	GAAGAC	4 cut(s)	14, 976, 2028, 2910
BstX2I	RGATCY	4 cut(s)	136, 319, 1456, 2069
BstXI	CCANNNNNNTGG	3 cut(s)	408, 2113, 2677
BstYI	RGATCY	4 cut(s)	136, 319, 1456, 2069
Bsu36I	CCTNAGG	2 cut(s)	258, 2517
BsuRI	GGCC	8 cut(s)	96, 343, 469, 521, 540, 2150, 2355, 2418
BtgI	CCRYGG	1 cut(s)	2752
BtsCI	GGATG	9 cut(s)	115, 494, 767, 910, 922, 1456, 2602, 2980, 3063
BtsIMutI	CAGTG	8 cut(s)	227, 756, 779, 1675, 2091, 2196, 2777, 2842
Cac8I	GCNNGC	4 cut(s)	847, 851, 1098, 2152
CaiI	CAGNNNCTG	1 cut(s)	1621
CciI	TCATGA	2 cut(s)	1783, 1870
CfoI	GCGC	6 cut(s)	19, 93, 1098, 1100, 1594, 2504
Cfr13I	GGNCC	7 cut(s)	95, 519, 538, 539, 2354, 2393, 2416
Cfr9I	CCCGGG	2 cut(s)	97, 2269
CseI	GACGC	3 cut(s)	8, 19, 445
Csp6I	GTAC	7 cut(s)	142, 1255, 1888, 2207, 2919, 2975, 3074
CspCI	CAANNNNNGTGG	2 cut(s)	2542, 2577
CviQI	GTAC	7 cut(s)	142, 1255, 1888, 2207, 2919, 2975, 3074
DraI	TTTAAA	1 cut(s)	2461
DriI	GACNNNNNGTC	2 cut(s)	18, 2797
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	5 cut(s)	1143, 1278, 1935, 2538, 2597
Eam1105I	GACNNNNNGTC	2 cut(s)	18, 2797
EarI	CTCTTC	5 cut(s)	1143, 1278, 1935, 2538, 2597
EciI	GGCGGA	1 cut(s)	472
Eco130I	CCWWGG	4 cut(s)	527, 1034, 1266, 2871
Eco24I	GRGCYC	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	2660
Eco47I	GGWCC	1 cut(s)	2393
Eco47III	AGCGCT	1 cut(s)	2503
Eco57I	CTGAAG	3 cut(s)	143, 1164, 2919
Eco81I	CCTNAGG	2 cut(s)	258, 2517
Eco88I	CYCGRG	3 cut(s)	97, 820, 2269
EcoNI	CCTNNNNNAGG	2 cut(s)	1359, 2423
EcoO109I	RGGNCCY	1 cut(s)	2416
EcoRI	GAATTC	2 cut(s)	1826, 2129
EcoRII	CCWGG	5 cut(s)	439, 489, 1100, 1237, 1354
EcoT14I	CCWWGG	4 cut(s)	527, 1034, 1266, 2871
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	4 cut(s)	527, 1034, 1266, 2871
FalI	AAGNNNNNCTT	2 cut(s)	1479, 1511
FaqI	GGGAC	1 cut(s)	1334
FauI	CCCGC	4 cut(s)	65, 420, 1436, 3065
FauNDI	CATATG	2 cut(s)	1388, 2952
FbaI	TGATCA	1 cut(s)	2728
FblI	GTMKAC	1 cut(s)	1815
FokI	GGATG	9 cut(s)	122, 481, 774, 897, 909, 1463, 2609, 2967, 3050
FriOI	GRGCYC	1 cut(s)	542
GlaI	GCGC	6 cut(s)	18, 92, 1097, 1099, 1593, 2503
GsuI	CTGGAG	2 cut(s)	1336, 1670
HaeII	RGCGCY	1 cut(s)	2505
HaeIII	GGCC	8 cut(s)	96, 343, 469, 521, 540, 2150, 2355, 2418
HapII	CCGG	7 cut(s)	69, 98, 470, 926, 2270, 2352, 2848
HgaI	GACGC	3 cut(s)	8, 19, 445
HhaI	GCGC	6 cut(s)	19, 93, 1098, 1100, 1594, 2504
Hin1I	GRCGYC	3 cut(s)	30, 437, 1990
Hin6I	GCGC	6 cut(s)	17, 91, 1096, 1098, 1592, 2502
HinP1I	GCGC	6 cut(s)	17, 91, 1096, 1098, 1592, 2502
HindIII	AAGCTT	1 cut(s)	847
HpaII	CCGG	7 cut(s)	69, 98, 470, 926, 2270, 2352, 2848
HphI	GGTGA	8 cut(s)	253, 338, 754, 1225, 1385, 1484, 2198, 2801
Hpy166II	GTNNAC	5 cut(s)	1492, 1816, 1982, 2963, 2975
Hpy8I	GTNNAC	5 cut(s)	1492, 1816, 1982, 2963, 2975
Hpy99I	CGWCG	3 cut(s)	35, 38, 41
HpyCH4III	ACNGT	7 cut(s)	231, 1405, 1550, 1813, 2756, 2781, 3022
HpyCH4IV	ACGT	5 cut(s)	675, 1294, 1978, 1990, 2612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	491, 611, 1076, 1102, 1660
HpySE526I	ACGT	5 cut(s)	675, 1294, 1978, 1990, 2612
Hsp92I	GRCGYC	3 cut(s)	30, 437, 1990
HspAI	GCGC	6 cut(s)	17, 91, 1096, 1098, 1592, 2502
Kpn2I	TCCGGA	1 cut(s)	925
Ksp22I	TGATCA	1 cut(s)	2728
LguI	GCTCTTC	1 cut(s)	1278
LmnI	GCTCC	4 cut(s)	9, 1075, 1651, 1931
Lsp1109I	GCAGC	7 cut(s)	360, 472, 612, 711, 1546, 2863, 3072
LweI	GCATC	9 cut(s)	243, 503, 832, 1333, 1441, 2020, 2771, 2857, 3072
MaeII	ACGT	5 cut(s)	675, 1294, 1978, 1990, 2612
MaeIII	GTNAC	7 cut(s)	225, 324, 671, 754, 1391, 2789, 3049
MbiI	CCGCTC	1 cut(s)	187
MfeI	CAATTG	3 cut(s)	1553, 1794, 2061
MflI	RGATCY	4 cut(s)	136, 319, 1456, 2069
MhlI	GDGCHC	2 cut(s)	66, 542
MlyI	GAGTC	2 cut(s)	1214, 2900
MmeI	TCCRAC	4 cut(s)	19, 389, 413, 544
MroI	TCCGGA	1 cut(s)	925
MroXI	GAANNNNTTC	3 cut(s)	1826, 1949, 3021
MseI	TTAA	7 cut(s)	750, 1110, 1298, 1689, 2049, 2304, 2460
MslI	CAYNNNNRTG	2 cut(s)	195, 1788
MspI	CCGG	7 cut(s)	69, 98, 470, 926, 2270, 2352, 2848
MspR9I	CCNGG	9 cut(s)	98, 99, 441, 491, 1102, 1239, 1356, 2270, 2271
MunI	CAATTG	3 cut(s)	1553, 1794, 2061
Mva1269I	GAATGC	1 cut(s)	2719
MvaI	CCWGG	5 cut(s)	441, 491, 1102, 1239, 1356
MvnI	CGCG	3 cut(s)	19, 93, 1098
MwoI	GCNNNNNNNGC	5 cut(s)	491, 611, 1076, 1102, 1660
NciI	CCSGG	4 cut(s)	98, 99, 2270, 2271
NdeI	CATATG	2 cut(s)	1388, 2952
NlaIV	GGNNCC	4 cut(s)	399, 540, 2356, 2452
NmuCI	GTSAC	6 cut(s)	225, 324, 754, 1391, 2789, 3049
NspI	RCATGY	4 cut(s)	1544, 1628, 1663, 1768
NspV	TTCGAA	2 cut(s)	999, 2583
PagI	TCATGA	2 cut(s)	1783, 1870
PauI	GCGCGC	1 cut(s)	1096
PciSI	GCTCTTC	1 cut(s)	1278
PctI	GAATGC	1 cut(s)	2719
PdmI	GAANNNNTTC	3 cut(s)	1826, 1949, 3021
PfeI	GAWTC	8 cut(s)	1087, 1129, 1220, 1307, 1861, 2226, 2648, 2832
PflFI	GACNNNGTC	1 cut(s)	2909
PflMI	CCANNNNNTGG	1 cut(s)	2758
PleI	GAGTC	2 cut(s)	1213, 2900
PpsI	GAGTC	2 cut(s)	1213, 2900
Ppu21I	YACGTR	1 cut(s)	2613
PsiI	TTATAA	1 cut(s)	1463
Psp6I	CCWGG	5 cut(s)	439, 489, 1100, 1237, 1354
PspGI	CCWGG	5 cut(s)	439, 489, 1100, 1237, 1354
PspN4I	GGNNCC	4 cut(s)	399, 540, 2356, 2452
PspOMI	GGGCCC	1 cut(s)	538
PspPI	GGNCC	7 cut(s)	95, 519, 538, 539, 2354, 2393, 2416
PstI	CTGCAG	1 cut(s)	2077
PstNI	CAGNNNCTG	1 cut(s)	1621
PsuI	RGATCY	4 cut(s)	136, 319, 1456, 2069
PsyI	GACNNNGTC	1 cut(s)	2909
PteI	GCGCGC	1 cut(s)	1096
RsaI	GTAC	7 cut(s)	143, 1256, 1889, 2208, 2920, 2976, 3075
RsaNI	GTAC	7 cut(s)	142, 1255, 1888, 2207, 2919, 2975, 3074
RseI	CAYNNNNRTG	2 cut(s)	195, 1788
SapI	GCTCTTC	1 cut(s)	1278
SaqAI	TTAA	7 cut(s)	750, 1110, 1298, 1689, 2049, 2304, 2460
Sau96I	GGNCC	7 cut(s)	95, 519, 538, 539, 2354, 2393, 2416
SchI	GAGTC	2 cut(s)	1214, 2900
ScrFI	CCNGG	9 cut(s)	98, 99, 441, 491, 1102, 1239, 1356, 2270, 2271
SduI	GDGCHC	2 cut(s)	66, 542
SfaNI	GCATC	9 cut(s)	243, 503, 832, 1333, 1441, 2020, 2771, 2857, 3072
SfcI	CTRYAG	3 cut(s)	2073, 2220, 2466
SfuI	TTCGAA	2 cut(s)	999, 2583
SinI	GGWCC	1 cut(s)	2393
SmaI	CCCGGG	2 cut(s)	99, 2271
SmiMI	CAYNNNNRTG	2 cut(s)	195, 1788
SmlI	CTYRAG	1 cut(s)	1700
SmoI	CTYRAG	1 cut(s)	1700
SspI	AATATT	4 cut(s)	994, 1024, 1837, 1950
StyD4I	CCNGG	9 cut(s)	96, 97, 439, 489, 1100, 1237, 1354, 2268, 2269
StyI	CCWWGG	4 cut(s)	527, 1034, 1266, 2871
TaaI	ACNGT	7 cut(s)	231, 1405, 1550, 1813, 2756, 2781, 3022
TaiI	ACGT	5 cut(s)	678, 1297, 1981, 1993, 2615
TaqI	TCGA	7 cut(s)	208, 289, 876, 999, 2055, 2583, 2801
TatI	WGTACW	3 cut(s)	1254, 2974, 3073
TauI	GCSGC	3 cut(s)	96, 190, 373
TfiI	GAWTC	8 cut(s)	1087, 1129, 1220, 1307, 1861, 2226, 2648, 2832
Tru1I	TTAA	7 cut(s)	750, 1110, 1298, 1689, 2049, 2304, 2460
Tru9I	TTAA	7 cut(s)	750, 1110, 1298, 1689, 2049, 2304, 2460
TscAI	CASTG	8 cut(s)	234, 763, 779, 1675, 2091, 2203, 2784, 2842
TseFI	GTSAC	6 cut(s)	225, 324, 754, 1391, 2789, 3049
TseI	GCWGC	7 cut(s)	373, 485, 625, 724, 1534, 2851, 3060
Tsp45I	GTSAC	6 cut(s)	225, 324, 754, 1391, 2789, 3049
TspGWI	ACGGA	1 cut(s)	1259
TspMI	CCCGGG	2 cut(s)	97, 2269
TspRI	CASTG	8 cut(s)	234, 763, 779, 1675, 2091, 2203, 2784, 2842
Tth111I	GACNNNGTC	1 cut(s)	2909
Van91I	CCANNNNNTGG	1 cut(s)	2758
VpaK11BI	GGWCC	1 cut(s)	2393
XagI	CCTNNNNNAGG	2 cut(s)	1359, 2423
XapI	RAATTY	7 cut(s)	1513, 1779, 1826, 1913, 2038, 2129, 2252
XbaI	TCTAGA	3 cut(s)	838, 889, 1901
XceI	RCATGY	4 cut(s)	1544, 1628, 1663, 1768
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1439, 2367
XmaI	CCCGGG	2 cut(s)	97, 2269
XmaJI	CCTAGG	1 cut(s)	527
XmiI	GTMKAC	1 cut(s)	1815
XmnI	GAANNNNTTC	3 cut(s)	1826, 1949, 3021
ZraI	GACGTC	1 cut(s)	1991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.