Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004090

Physical Location & Seq

Genomic Coordinates Forward (+)

19464919 .. 19469019

Gene Structure 4101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25540.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAACGGAATCCGAAGAAGAAGTAACAGAAAACCAGAAATGGAAGCTTCCCTAAGAAACCTGAGAATCCAGAAGCCTCTCTCCGATTGCAGCAACACCGTCACCGTCACCGACAGCGCCGCCGCCGCCTCTACCCAGTCGTCTACGGCCTCCAGCGGCGAGATCAAACGCCACAACCCGACGCTGTCCTCCGTCGTCAACACGCTCGTCGCCTCCTTGACTGCCAAAAACGACGCCGTCTCGAGCCCCAGGGGTTCCTCTCCTTCTACTCCTCAGGTTTCCTCCTCCGTTTCAGGTACCAGTGGATATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCGGAGACAAACGGCAGTGAAAAGGAAGATTACAGGGAAGGAAAATGATGTACCATTCAGTTGCCCTCGGACGCCAAAAACTCGGAATGTTGGGAAAAAAACGAAACAAGATGGTTGCAACATTCAATCCAAGATTGATTCAACACCAATTGCTTCCACTCCTACACCTCGCGTTTCATCATCAACTTTTGATACCATTAATCGTGATGTATTTGAGCCTCATTCAGTGTATGGTCGAAGACAGACTGCACAAAAAAGGAAAAGCAAAGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCGGGAATACTTGGGATAACTCAAATGAAGATGGACAGAACCGTCTATTCAAGAAATCCAAGGCTCCTTGTAAAACGAAGGTTTTACCAGCTAAAAAAGGAACTTCCGAGTACACATCGCCAGAACTTGAAAAGCAGAAAGCTTACTTTGCAGAGCTCGATAAATATGAACTGGAGGAGGCTGAAGAATGGGAGTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

31.01

Weight (kDa)

9.59

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56250 AT3G56250 AT3G56250 AT3G56250
fragaria_vesca	FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540
malus_domestica	MD01G1162300.v1.1 MD07G1230300.v1.1
prunus_persica	Prupe.2G260200_v2.0.a1 Prupe.2G260200_v2.0.a1
pyrus_communis	pycom07g20780
rosa_chinensis	RchiOBHm_Chr1g0371541
rosa_laevigata	RLG00000026953
rosa_multiflora	Rmu_sc0000948.1_g000035 Rmu_sc0004208.1_g000019
rosa_roxburghii	Rroxscaffold_4G00285570 Rroxscaffold_4G00304530
rosa_rugosa	Rorug01G0365100 Rorug01G0365200
rosa_samantha	Rh1AG375100 Rh1BG338600 Rh1CG095700 Rh1CG351900 Rh1DG369600 Rh3AG109200 Rh3CG114500
rosa_wichuraiana	Rw1G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	693
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	1 cut(s)	510
AciI	CCGC	4 cut(s)	120, 123, 126, 156
AcuI	CTGAAG	3 cut(s)	312, 668, 855
AcyI	GRCGYC	2 cut(s)	234, 410
AfaI	GTAC	4 cut(s)	298, 335, 390, 764
AgsI	TTSAA	4 cut(s)	464, 480, 703, 782
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	5 cut(s)	47, 626, 743, 794, 808
AluI	AGCT	5 cut(s)	47, 626, 743, 794, 808
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	2 cut(s)	244, 337
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	90
AseI	ATTAAT	1 cut(s)	537
Asp718I	GGTACC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	94, 100
AvaI	CYCGRG	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	248, 810
BbsI	GAAGAC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	810
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	443, 677
BceAI	ACGGC	3 cut(s)	162, 221, 366
BciT130I	CCWGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	244, 337
BfaI	CTAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	5 cut(s)	91, 120, 123, 126, 157
BlsI	GCNGC	5 cut(s)	92, 121, 124, 127, 158
Bme1390I	CCNGG	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	241
BmiI	GGNNCC	3 cut(s)	256, 298, 717
BmrFI	CCNGG	1 cut(s)	250
BmrI	ACTGGG	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	2 cut(s)	136, 845
BsaHI	GRCGYC	2 cut(s)	234, 410
BsaJI	CCNNGG	4 cut(s)	248, 249, 404, 711
Bse1I	ACTGG	3 cut(s)	136, 300, 828
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	4 cut(s)	248, 249, 404, 711
BseMII	CTCAG	2 cut(s)	53, 287
BseNI	ACTGG	3 cut(s)	136, 300, 828
BseRI	GAGGAG	3 cut(s)	261, 274, 842
BseXI	GCAGC	1 cut(s)	102
BsgI	GTGCAG	2 cut(s)	570, 627
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	810
BsiHKCI	CYCGRG	1 cut(s)	241
BsmAI	GTCTC	2 cut(s)	244, 337
BsmBI	CGTCTC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	248, 810
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	162, 651
BspACI	CCGC	4 cut(s)	120, 123, 126, 156
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	54, 286
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	256, 298, 717
BspT107I	GGYRCC	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	3 cut(s)	136, 300, 828
BssECI	CCNNGG	4 cut(s)	248, 249, 404, 711
BssMI	GATC	2 cut(s)	162, 651
BssNI	GRCGYC	2 cut(s)	234, 410
BssT1I	CCWWGG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	4 cut(s)	100, 106, 338, 695
BstACI	GRCGYC	2 cut(s)	234, 410
BstAUI	TGTACA	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	53, 62, 273
BstFNI	CGCG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	165, 654
BstMAI	GTCTC	2 cut(s)	244, 337
BstMBI	GATC	2 cut(s)	162, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 800
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	753
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	5 cut(s)	307, 336, 360, 570, 644
CfoI	GCGC	1 cut(s)	119
CseI	GACGC	3 cut(s)	190, 242, 418
Csp6I	GTAC	4 cut(s)	297, 334, 389, 763
CviQI	GTAC	4 cut(s)	297, 334, 389, 763
DdeI	CTNAG	3 cut(s)	53, 62, 273
DpnI	GATC	2 cut(s)	164, 653
DpnII	GATC	2 cut(s)	162, 651
DrdI	GACNNNNNNGTC	1 cut(s)	693
DseDI	GACNNNNNNGTC	1 cut(s)	693
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	711
Eco24I	GRGCYC	2 cut(s)	248, 810
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	3 cut(s)	312, 668, 855
Eco81I	CCTNAGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	808
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	711
EcoT38I	GRGCYC	2 cut(s)	248, 810
ErhI	CCWWGG	1 cut(s)	711
Esp3I	CGTCTC	1 cut(s)	244
FaiI	YATR	3 cut(s)	309, 570, 819
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	91, 120, 123, 126, 157
FriOI	GRGCYC	2 cut(s)	248, 810
Fsp4HI	GCNGC	5 cut(s)	91, 120, 123, 126, 157
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	5 cut(s)	91, 120, 123, 126, 157
GsuI	CTGGAG	2 cut(s)	136, 845
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	149
HgaI	GACGC	3 cut(s)	190, 242, 418
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	2 cut(s)	234, 410
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	2 cut(s)	45, 792
HinfI	GANTC	3 cut(s)	9, 66, 476
HphI	GGTGA	2 cut(s)	94, 100
Hpy166II	GTNNAC	4 cut(s)	144, 199, 334, 765
Hpy188I	TCNGA	7 cut(s)	14, 85, 319, 342, 408, 423, 760
Hpy188III	TCNNGA	5 cut(s)	70, 241, 542, 655, 703
Hpy8I	GTNNAC	4 cut(s)	144, 199, 334, 765
Hpy99I	CGWCG	4 cut(s)	184, 197, 212, 236
HpyAV	CCTTC	4 cut(s)	273, 333, 370, 724
HpyCH4III	ACNGT	4 cut(s)	100, 106, 338, 695
HpyCH4V	TGCA	5 cut(s)	90, 456, 587, 644, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 800
HpyF3I	CTNAG	3 cut(s)	53, 62, 273
Hsp92I	GRCGYC	2 cut(s)	234, 410
HspAI	GCGC	1 cut(s)	117
KpnI	GGTACC	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	162, 651
LmnI	GCTCC	2 cut(s)	623, 721
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	3 cut(s)	23, 100, 106
MalI	GATC	2 cut(s)	164, 653
MboI	GATC	2 cut(s)	162, 651
MboII	GAAGA	8 cut(s)	27, 30, 318, 376, 588, 661, 692, 848
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	248, 810
MluCI	AATT	1 cut(s)	486
MmeI	TCCRAC	2 cut(s)	320, 828
MseI	TTAA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	125, 800
NdeII	GATC	2 cut(s)	162, 651
NlaIV	GGNNCC	3 cut(s)	256, 298, 717
NmuCI	GTSAC	2 cut(s)	100, 106
PaeR7I	CTCGAG	1 cut(s)	241
PasI	CCCWGGG	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	9, 66, 476
PflFI	GACNNNGTC	2 cut(s)	184, 236
PkrI	GCNGC	5 cut(s)	92, 121, 124, 127, 158
PshBI	ATTAAT	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	810
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	3 cut(s)	256, 298, 717
PsyI	GACNNNGTC	2 cut(s)	184, 236
RsaI	GTAC	4 cut(s)	298, 335, 390, 764
RsaNI	GTAC	4 cut(s)	297, 334, 389, 763
SacI	GAGCTC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	5 cut(s)	91, 120, 123, 126, 157
Sau3AI	GATC	2 cut(s)	162, 651
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	2 cut(s)	248, 810
Sfr274I	CTCGAG	1 cut(s)	241
SlaI	CTCGAG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	4 cut(s)	120, 123, 126, 156
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	810
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	711
TaaI	ACNGT	4 cut(s)	100, 106, 338, 695
TaqI	TCGA	3 cut(s)	242, 574, 810
TasI	AATT	1 cut(s)	486
TatI	WGTACW	2 cut(s)	333, 762
TauI	GCSGC	4 cut(s)	122, 125, 128, 159
TfiI	GAWTC	3 cut(s)	9, 66, 476
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	5 cut(s)	307, 336, 360, 570, 651
TseFI	GTSAC	2 cut(s)	100, 106
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	2 cut(s)	100, 106
TspDTI	ATGAA	4 cut(s)	17, 504, 693, 834
TspGWI	ACGGA	3 cut(s)	21, 181, 277
TspRI	CASTG	5 cut(s)	307, 336, 360, 570, 651
Tth111I	GACNNNGTC	2 cut(s)	184, 236
VspI	ATTAAT	1 cut(s)	537
XhoI	CTCGAG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.