RLG00000026953

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004090
Physical Location & Seq
Reverse (-)
7223462 .. 7227187
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026953

Sequence Viewer

Length: 846 bp
ATGAACGGAGTTCGAAGAAGTAACAGAAAAACAGAAATGGAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTTACCGTCACCGTCAACGATAGCACCGCCGCCGCCGCCTCCACGCAGTCATCCACGGCCTCCTCCGGTACGATCAAACGCCAGAACCCGACTCTTTCCTCCGTCGCCAAGACACTGCACGCCTCCTTGACTACCAAAACCGACGCCGTTTCGGACCCTAGGGGATCCGCTCCTTCTACTTCTCTGGTTTCCTCCTCCGTTTCAGGTACCAGCGATTATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCACTAAAAAGGAAGACTACAGGGAAGGAAAATGATGTACAATTTAGTTGCCCTCGTACACCAAAGACCCGGAATGTTGGGAAAAAAACTAAACAAGATGGACATAACATCCAATCTGAGATGGACAGAACACCAATTGCTTCCACTCCTACACCTCGCATTTCATCGTCAAGTTCTGATACCAGTAATCGTGAGGTATATGAACCTCATTCAGTCTATACTCGAAGACAGACTGCATCGAAAAGAAATAGCAAAGGGCAGGAAAACATTGGAGCTTCTGCACTGAAGATCCGGAATACTTGCAAGGATAACTCAAATGAAGATGGATACAACAGTCTATCAAAGAAATCCAAGGCTTCTTGCAGAAAGGTTGTACCAACTAAAAAAGAAGCTTCTGAGTACACTTCGCCAGACCTTGAAAAGCAGAGAGCTTACTTTGCAGAGCTTGATAAATATGAACTGCCCGTAGAGGAGGCTGAAGAATGGGAGTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

30.72

Weight (kDa)

9.36

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sororin_C PF25220 255 - 273 5.9e-06 Sororin C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 639
AciI CCGC 5 cut(s) 114, 117, 120, 123, 255
AclWI GGATC 3 cut(s) 246, 259, 631
AcuI CTGAAG 4 cut(s) 80, 309, 653, 846
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 7 cut(s) 157, 295, 332, 387, 406, 723, 749
AgsI TTSAA 1 cut(s) 767
AluBI AGCT 6 cut(s) 44, 58, 623, 740, 779, 793
AluI AGCT 6 cut(s) 44, 58, 623, 740, 779, 793
AlwI GGATC 3 cut(s) 246, 259, 631
Aor13HI TCCGGA 1 cut(s) 639
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 78
Asp718I GGTACC 1 cut(s) 293
AspA2I CCTAGG 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 241
AvrII CCTAGG 1 cut(s) 245
BaeI ACNNNNGTAYC 2 cut(s) 667, 700
BamHI GGATCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 368, 580
BbvI GCAGC 1 cut(s) 90
BccI CCATC 3 cut(s) 440, 463, 665
BceAI ACGGC 3 cut(s) 159, 218, 363
BciVI GTATCC 1 cut(s) 668
BcnI CCSGG 1 cut(s) 418
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 366
BfuI GTATCC 1 cut(s) 668
BisI GCNGC 4 cut(s) 79, 117, 120, 123
BlnI CCTAGG 1 cut(s) 245
BlsI GCNGC 4 cut(s) 80, 118, 121, 124
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 3 cut(s) 243, 253, 295
BmrFI CCNGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 593
BpiI GAAGAC 2 cut(s) 368, 580
Bpu14I TTCGAA 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 141, 245, 699
BsaWI WCCGGW 2 cut(s) 152, 639
Bse1I ACTGG 1 cut(s) 531
BseAI TCCGGA 1 cut(s) 639
BseDI CCNNGG 3 cut(s) 141, 245, 699
BseGI GGATG 2 cut(s) 137, 456
BseMII CTCAG 3 cut(s) 41, 456, 735
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 3 cut(s) 139, 271, 833
BseXI GCAGC 1 cut(s) 90
BsgI GTGCAG 2 cut(s) 188, 612
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 293
BsiSI CCGG 3 cut(s) 153, 418, 640
BsnI GGCC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 639
Bsp1407I TGTACA 2 cut(s) 330, 385
Bsp143I GATC 3 cut(s) 159, 251, 636
BspACI CCGC 5 cut(s) 114, 117, 120, 123, 255
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 3 cut(s) 42, 457, 736
BspEI TCCGGA 1 cut(s) 639
BspLI GGNNCC 3 cut(s) 243, 253, 295
BspPI GGATC 3 cut(s) 246, 259, 631
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 257
BsrGI TGTACA 2 cut(s) 330, 385
BsrI ACTGG 1 cut(s) 531
BssECI CCNNGG 3 cut(s) 141, 245, 699
BssMI GATC 3 cut(s) 159, 251, 636
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 245, 699
Bst4CI ACNGT 5 cut(s) 88, 94, 100, 335, 683
BstACI GRCGYC 1 cut(s) 231
BstAUI TGTACA 2 cut(s) 330, 385
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 3 cut(s) 50, 465, 744
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 137, 456
BstKTI GATC 3 cut(s) 162, 254, 639
BstMBI GATC 3 cut(s) 159, 251, 636
BstMWI GCNNNNNNNGC 2 cut(s) 122, 785
BstSCI CCNGG 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 2 cut(s) 368, 580
BstX2I RGATCY 2 cut(s) 251, 636
BstYI RGATCY 2 cut(s) 251, 636
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 137, 456
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 4 cut(s) 47, 200, 333, 629
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 1 cut(s) 239
Csp6I GTAC 7 cut(s) 156, 294, 331, 386, 405, 722, 748
CviQI GTAC 7 cut(s) 156, 294, 331, 386, 405, 722, 748
DdeI CTNAG 3 cut(s) 50, 465, 744
DpnI GATC 3 cut(s) 161, 253, 638
DpnII GATC 3 cut(s) 159, 251, 636
Eco130I CCWWGG 2 cut(s) 245, 699
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 4 cut(s) 80, 309, 653, 846
EcoT14I CCWWGG 2 cut(s) 245, 699
ErhI CCWWGG 2 cut(s) 245, 699
FaiI YATR 6 cut(s) 306, 453, 547, 549, 567, 804
Fnu4HI GCNGC 4 cut(s) 79, 117, 120, 123
FokI GGATG 2 cut(s) 124, 443
Fsp4HI GCNGC 4 cut(s) 79, 117, 120, 123
FspBI CTAG 1 cut(s) 246
GluI GCNGC 4 cut(s) 79, 117, 120, 123
HaeIII GGCC 1 cut(s) 146
HapII CCGG 3 cut(s) 153, 418, 640
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 231
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 42, 738
HinfI GANTC 1 cut(s) 178
HpaII CCGG 3 cut(s) 153, 418, 640
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 4 cut(s) 103, 331, 407, 750
Hpy188I TCNGA 6 cut(s) 73, 241, 316, 466, 526, 745
Hpy188III TCNNGA 2 cut(s) 539, 640
Hpy8I GTNNAC 4 cut(s) 103, 331, 407, 750
Hpy99I CGWCG 2 cut(s) 194, 233
HpyAV CCTTC 3 cut(s) 270, 330, 367
HpyCH4III ACNGT 5 cut(s) 88, 94, 100, 335, 683
HpyCH4V TGCA 7 cut(s) 78, 205, 584, 629, 651, 711, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 785
HpyF3I CTNAG 3 cut(s) 50, 465, 744
Hsp92I GRCGYC 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 639
KpnI GGTACC 1 cut(s) 297
Kzo9I GATC 3 cut(s) 159, 251, 636
LmnI GCTCC 2 cut(s) 262, 620
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 593
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 20, 88, 94
MalI GATC 3 cut(s) 161, 253, 638
MbiI CCGCTC 1 cut(s) 257
MboI GATC 3 cut(s) 159, 251, 636
MboII GAAGA 7 cut(s) 27, 315, 373, 585, 646, 680, 839
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 2 cut(s) 251, 636
MluCI AATT 2 cut(s) 389, 483
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 819
MroI TCCGGA 1 cut(s) 639
MspI CCGG 3 cut(s) 153, 418, 640
MspR9I CCNGG 1 cut(s) 418
MunI CAATTG 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 122, 785
NciI CCSGG 1 cut(s) 418
NdeII GATC 3 cut(s) 159, 251, 636
NlaIV GGNNCC 3 cut(s) 243, 253, 295
NmuCI GTSAC 1 cut(s) 94
NspV TTCGAA 1 cut(s) 13
PkrI GCNGC 4 cut(s) 80, 118, 121, 124
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 243, 253, 295
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 2 cut(s) 251, 636
RsaI GTAC 7 cut(s) 157, 295, 332, 387, 406, 723, 749
RsaNI GTAC 7 cut(s) 156, 294, 331, 386, 405, 722, 748
SatI GCNGC 4 cut(s) 79, 117, 120, 123
Sau3AI GATC 3 cut(s) 159, 251, 636
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 418
SfaNI GCATC 1 cut(s) 593
SfcI CTRYAG 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 241
Sse9I AATT 2 cut(s) 389, 483
SsiI CCGC 5 cut(s) 114, 117, 120, 123, 255
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 2 cut(s) 245, 699
TaaI ACNGT 5 cut(s) 88, 94, 100, 335, 683
TaqI TCGA 3 cut(s) 13, 571, 587
TasI AATT 2 cut(s) 389, 483
TatI WGTACW 3 cut(s) 330, 385, 747
TauI GCSGC 3 cut(s) 119, 122, 125
TscAI CASTG 4 cut(s) 54, 207, 333, 636
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 5 cut(s) 17, 501, 564, 681, 819
TspGWI ACGGA 3 cut(s) 21, 178, 274
TspRI CASTG 4 cut(s) 54, 207, 333, 636
VpaK11BI GGWCC 1 cut(s) 241
XmaJI CCTAGG 1 cut(s) 245
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.