Rh1DG369600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004090
Physical Location & Seq
Forward (+)
59426920 .. 59430392
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG369600.1

Sequence Viewer

Length: 822 bp
ATGGAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCGGATTGCAGCAACACCGTTACCGTCACCGTCACCGATAGCACCGCCGCCGCCGCCTCCACGCAGTCCTCCACGGCCTCCTCCGGTACGATCAAAAGCCAGATCCCGACTCTTTCCTCCGTCGCCAAGACACTGCACGCCTCCTCGACTGCCAAAACCGACGCCGTTTCGGACCCTGGGAGATCCGCTCCTTCTACTCCTCTGGCTTCCTCCTCCGTTTCAGGTACCAGCGATTATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCATTAAAAAGGAAGACTACAGGGAAGGAAAATGATGTACAATTTAGTTGCCCTCGTACACCAAAGAACCGGAATGTTGGGAAAAAAACTAAACAAGACGGACATAACATCCAATCTGAGATGGACAGAACACCAATTGCTTCCACTCCTACACCTCGCATTTCATCATCAAGTTCTGATACCAGTAATCGTGAGGTATACGAACCTCATTCAGTCTATACTCGAAGACAGACTGCGTCAAAAAGAAATAGCAAAGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCCAGAATACTTGGGATAACTCAAATGAAGATGGATACAACAGTCTATCAAAGAAATCCAAGGCTTCTTGCAGAAAGAAGGTTGTACCAACTAAAAAAGAAGCTTCTGAGTACACTTCGCCAGACCTTGAAAAGCAGAGAGCCTACTTTGCAGAGCTTGATAAATATGAACTGCCAGTAGAGGAGGCTGAAGAATGGGAGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

29.58

Weight (kDa)

8.88

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sororin_C PF25220 247 - 265 5.7e-06 Sororin C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccBSI CCGCTC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 510
AciI CCGC 5 cut(s) 78, 81, 84, 87, 219
AclWI GGATC 3 cut(s) 130, 210, 607
AcuI CTGAAG 4 cut(s) 44, 273, 629, 822
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 7 cut(s) 121, 259, 296, 351, 370, 699, 725
AgsI TTSAA 1 cut(s) 743
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 5 cut(s) 8, 22, 587, 716, 769
AluI AGCT 5 cut(s) 8, 22, 587, 716, 769
AlwI GGATC 3 cut(s) 130, 210, 607
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 42
Asp718I GGTACC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 52, 58
AvaII GGWCC 1 cut(s) 205
BaeI ACNNNNGTAYC 2 cut(s) 640, 673
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 332, 544
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 427, 638
BceAI ACGGC 3 cut(s) 123, 182, 327
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 641
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 4 cut(s) 43, 81, 84, 87
BlsI GCNGC 4 cut(s) 44, 82, 85, 88
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 207, 259
BmrFI CCNGG 1 cut(s) 210
BpiI GAAGAC 2 cut(s) 332, 544
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 105, 208, 209, 672
BsaWI WCCGGW 2 cut(s) 116, 381
Bse1I ACTGG 2 cut(s) 495, 788
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 4 cut(s) 105, 208, 209, 672
BseGI GGATG 1 cut(s) 420
BseMII CTCAG 3 cut(s) 5, 420, 711
BseNI ACTGG 2 cut(s) 495, 788
BseRI GAGGAG 5 cut(s) 103, 166, 222, 235, 809
BseXI GCAGC 1 cut(s) 54
BsgI GTGCAG 2 cut(s) 152, 588
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 2 cut(s) 117, 382
BsnI GGCC 1 cut(s) 110
Bsp1407I TGTACA 2 cut(s) 294, 349
Bsp143I GATC 4 cut(s) 123, 135, 215, 612
BspACI CCGC 5 cut(s) 78, 81, 84, 87, 219
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 3 cut(s) 6, 421, 712
BspLI GGNNCC 2 cut(s) 207, 259
BspPI GGATC 3 cut(s) 130, 210, 607
BspT107I GGYRCC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 221
BsrGI TGTACA 2 cut(s) 294, 349
BsrI ACTGG 2 cut(s) 495, 788
BssECI CCNNGG 4 cut(s) 105, 208, 209, 672
BssMI GATC 4 cut(s) 123, 135, 215, 612
BssNAI GTATAC 1 cut(s) 511
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 672
Bst1107I GTATAC 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 5 cut(s) 52, 58, 64, 299, 656
BstACI GRCGYC 1 cut(s) 195
BstAUI TGTACA 2 cut(s) 294, 349
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 14, 429, 720
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 420
BstKTI GATC 4 cut(s) 126, 138, 218, 615
BstMBI GATC 4 cut(s) 123, 135, 215, 612
BstMWI GCNNNNNNNGC 2 cut(s) 86, 761
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 2 cut(s) 332, 544
BstX2I RGATCY 3 cut(s) 135, 215, 612
BstYI RGATCY 3 cut(s) 135, 215, 612
BstZ17I GTATAC 1 cut(s) 511
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 4 cut(s) 11, 164, 297, 605
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 2 cut(s) 203, 537
Csp6I GTAC 7 cut(s) 120, 258, 295, 350, 369, 698, 724
CviQI GTAC 7 cut(s) 120, 258, 295, 350, 369, 698, 724
DdeI CTNAG 3 cut(s) 14, 429, 720
DpnI GATC 4 cut(s) 125, 137, 217, 614
DpnII GATC 4 cut(s) 123, 135, 215, 612
Eco130I CCWWGG 1 cut(s) 672
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 4 cut(s) 44, 273, 629, 822
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
FaiI YATR 5 cut(s) 270, 417, 511, 531, 780
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 43, 81, 84, 87
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 4 cut(s) 43, 81, 84, 87
FspBI CTAG 1 cut(s) 591
GluI GCNGC 4 cut(s) 43, 81, 84, 87
HaeIII GGCC 1 cut(s) 110
HapII CCGG 2 cut(s) 117, 382
HgaI GACGC 2 cut(s) 203, 537
Hin1I GRCGYC 1 cut(s) 195
HindIII AAGCTT 2 cut(s) 6, 714
HinfI GANTC 1 cut(s) 142
HpaII CCGG 2 cut(s) 117, 382
HphI GGTGA 2 cut(s) 52, 58
Hpy166II GTNNAC 4 cut(s) 295, 371, 511, 726
Hpy188I TCNGA 6 cut(s) 37, 205, 280, 430, 490, 721
Hpy188III TCNNGA 3 cut(s) 139, 503, 616
Hpy8I GTNNAC 4 cut(s) 295, 371, 511, 726
Hpy99I CGWCG 2 cut(s) 158, 197
HpyAV CCTTC 4 cut(s) 234, 294, 331, 685
HpyCH4III ACNGT 5 cut(s) 52, 58, 64, 299, 656
HpyCH4V TGCA 5 cut(s) 42, 169, 605, 684, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 761
HpyF3I CTNAG 3 cut(s) 14, 429, 720
Hsp92I GRCGYC 1 cut(s) 195
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 4 cut(s) 123, 135, 215, 612
LmnI GCTCC 2 cut(s) 226, 584
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 591
MaeIII GTNAC 3 cut(s) 52, 58, 64
MalI GATC 4 cut(s) 125, 137, 217, 614
MbiI CCGCTC 1 cut(s) 221
MboI GATC 4 cut(s) 123, 135, 215, 612
MboII GAAGA 6 cut(s) 279, 337, 549, 622, 653, 815
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 3 cut(s) 135, 215, 612
MluCI AATT 2 cut(s) 353, 447
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 795
MseI TTAA 1 cut(s) 317
MspI CCGG 2 cut(s) 117, 382
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 86, 761
NdeII GATC 4 cut(s) 123, 135, 215, 612
NlaIV GGNNCC 2 cut(s) 207, 259
NmuCI GTSAC 2 cut(s) 58, 64
PasI CCCWGGG 1 cut(s) 209
PflFI GACNNNGTC 1 cut(s) 547
PkrI GCNGC 4 cut(s) 44, 82, 85, 88
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 207, 259
PspPI GGNCC 1 cut(s) 205
PsuI RGATCY 3 cut(s) 135, 215, 612
PsyI GACNNNGTC 1 cut(s) 547
RsaI GTAC 7 cut(s) 121, 259, 296, 351, 370, 699, 725
RsaNI GTAC 7 cut(s) 120, 258, 295, 350, 369, 698, 724
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 4 cut(s) 43, 81, 84, 87
Sau3AI GATC 4 cut(s) 123, 135, 215, 612
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 205
Sse9I AATT 2 cut(s) 353, 447
SsiI CCGC 5 cut(s) 78, 81, 84, 87, 219
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 5 cut(s) 52, 58, 64, 299, 656
TaqI TCGA 2 cut(s) 179, 535
TasI AATT 2 cut(s) 353, 447
TatI WGTACW 3 cut(s) 294, 349, 723
TauI GCSGC 3 cut(s) 83, 86, 89
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 4 cut(s) 18, 171, 297, 612
TseFI GTSAC 2 cut(s) 58, 64
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 2 cut(s) 58, 64
TspDTI ATGAA 3 cut(s) 465, 654, 795
TspGWI ACGGA 3 cut(s) 142, 238, 426
TspRI CASTG 4 cut(s) 18, 171, 297, 612
Tth111I GACNNNGTC 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.