Rw1G033000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004090
Physical Location & Seq
Forward (+)
61160460 .. 61163961
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033000.1

Sequence Viewer

Length: 864 bp
ATGAACGGAGTTCGAAGAAGTAACAGAAAAACAGAAATGGAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTTTCCGTCACCGTCACCGATAGCACCGCTGCCGCCGCCGCCTCCACGCAGTCGTCCACGGCCTCCTCCGGTACGATCAAACGCCAGAACCCGACTCTTTCCTCCGTCGCCAAGACACTGCACGCCTCCTTGACTGCCAAAACCGACGCCGTTTCGGACCCTAGGAGATCCGCTCCTTCTACTCCTCTGGTTTCCTCCTCCGTTTCAGGTACCAGCGATTATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCATTAAAAAGGAAGACTACTGGGAAGGAAAATGATGCACAATTTAGTTGCCCTCGTACACCAAAGACCCGGAATGTTGGGAAAAAAACTAAACAAGATGGACATAACATCCAATCTGAGATGGACAGAACACCAATTGCTTCCACTCCTACACCTCGCATTTCATCATCAAGTTCTGATACCAGTAATCGTGAGGTATACGAACCTCATTCAGTCTATACTCGAAGACAGACTGCATCAAAAAGAAATAGCAAAGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCCGGAATACTTGCAGGGATAACTCAAATGAAGATGGATACAACAGTCTATCAAAGAAATCCAAGGCTTCTTGCAGAAAGAAGGTTGTACCAACTAAAAAAGAAGCTTCTGAGTACACTTCGCCAGACCTTGAAAAGCAGAGAGCTTACTTTGCAGAGCTTGATAAATATGAACTGCCAGTAGAGGAGGCTGAAGAATGGGAGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.35

Weight (kDa)

9.45

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sororin_C PF25220 261 - 279 6e-06 Sororin C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 549
AccIII TCCGGA 1 cut(s) 654
AciI CCGC 5 cut(s) 114, 120, 123, 126, 258
AclWI GGATC 2 cut(s) 249, 646
AcuI CTGAAG 4 cut(s) 80, 312, 668, 864
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 6 cut(s) 160, 298, 335, 409, 741, 767
AgsI TTSAA 1 cut(s) 785
AluBI AGCT 6 cut(s) 44, 58, 626, 758, 797, 811
AluI AGCT 6 cut(s) 44, 58, 626, 758, 797, 811
AlwI GGATC 2 cut(s) 249, 646
Aor13HI TCCGGA 1 cut(s) 654
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 78, 116
Asp718I GGTACC 1 cut(s) 296
AspA2I CCTAGG 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 88, 94
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 244
AvrII CCTAGG 1 cut(s) 248
BaeI ACNNNNGTAYC 2 cut(s) 682, 715
BanI GGYRCC 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 371, 583
BbvI GCAGC 2 cut(s) 90, 103
BccI CCATC 3 cut(s) 443, 466, 680
BceAI ACGGC 3 cut(s) 162, 221, 366
BciVI GTATCC 1 cut(s) 683
BcnI CCSGG 1 cut(s) 421
BfaI CTAG 2 cut(s) 249, 630
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 5 cut(s) 79, 117, 120, 123, 126
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 5 cut(s) 80, 118, 121, 124, 127
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 246, 298
BmrFI CCNGG 1 cut(s) 421
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 2 cut(s) 376, 596
BmuI ACTGGG 1 cut(s) 381
BpiI GAAGAC 2 cut(s) 371, 583
BplI GAGNNNNNCTC 2 cut(s) 244, 276
Bpu14I TTCGAA 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 421
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 144, 248, 714
BsaWI WCCGGW 2 cut(s) 155, 654
Bse1I ACTGG 3 cut(s) 376, 534, 830
BseAI TCCGGA 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 144, 248, 714
BseGI GGATG 1 cut(s) 459
BseMII CTCAG 3 cut(s) 41, 459, 753
BseNI ACTGG 3 cut(s) 376, 534, 830
BseRI GAGGAG 4 cut(s) 142, 261, 274, 851
BseXI GCAGC 2 cut(s) 90, 103
BsgI GTGCAG 2 cut(s) 191, 627
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 296
BsiSI CCGG 3 cut(s) 156, 421, 655
BsnI GGCC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 654
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 3 cut(s) 162, 254, 651
BspACI CCGC 5 cut(s) 114, 120, 123, 126, 258
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 3 cut(s) 42, 460, 754
BspEI TCCGGA 1 cut(s) 654
BspLI GGNNCC 2 cut(s) 246, 298
BspPI GGATC 2 cut(s) 249, 646
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 3 cut(s) 376, 534, 830
BssECI CCNNGG 3 cut(s) 144, 248, 714
BssMI GATC 3 cut(s) 162, 254, 651
BssNAI GTATAC 1 cut(s) 550
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 248, 714
Bst1107I GTATAC 1 cut(s) 550
Bst4CI ACNGT 4 cut(s) 88, 100, 338, 698
BstACI GRCGYC 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 333
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 50, 468, 762
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 459
BstKTI GATC 3 cut(s) 165, 257, 654
BstMBI GATC 3 cut(s) 162, 254, 651
BstMWI GCNNNNNNNGC 3 cut(s) 122, 125, 803
BstSCI CCNGG 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 90, 103
BstV2I GAAGAC 2 cut(s) 371, 583
BstX2I RGATCY 2 cut(s) 254, 651
BstYI RGATCY 2 cut(s) 254, 651
BstZ17I GTATAC 1 cut(s) 550
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 459
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 4 cut(s) 47, 203, 336, 644
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 242
Csp6I GTAC 6 cut(s) 159, 297, 334, 408, 740, 766
CviQI GTAC 6 cut(s) 159, 297, 334, 408, 740, 766
DdeI CTNAG 3 cut(s) 50, 468, 762
DpnI GATC 3 cut(s) 164, 256, 653
DpnII GATC 3 cut(s) 162, 254, 651
Eco130I CCWWGG 2 cut(s) 248, 714
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 4 cut(s) 80, 312, 668, 864
EcoT14I CCWWGG 2 cut(s) 248, 714
ErhI CCWWGG 2 cut(s) 248, 714
FaiI YATR 5 cut(s) 309, 456, 550, 570, 822
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 5 cut(s) 79, 117, 120, 123, 126
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 5 cut(s) 79, 117, 120, 123, 126
FspBI CTAG 2 cut(s) 249, 630
GluI GCNGC 5 cut(s) 79, 117, 120, 123, 126
HaeIII GGCC 1 cut(s) 149
HapII CCGG 3 cut(s) 156, 421, 655
HgaI GACGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 234
HindIII AAGCTT 2 cut(s) 42, 756
HinfI GANTC 1 cut(s) 181
HpaII CCGG 3 cut(s) 156, 421, 655
HphI GGTGA 2 cut(s) 88, 94
Hpy166II GTNNAC 5 cut(s) 144, 334, 410, 550, 768
Hpy188I TCNGA 6 cut(s) 73, 244, 319, 469, 529, 763
Hpy188III TCNNGA 2 cut(s) 542, 655
Hpy8I GTNNAC 5 cut(s) 144, 334, 410, 550, 768
Hpy99I CGWCG 2 cut(s) 197, 236
HpyAV CCTTC 4 cut(s) 273, 333, 370, 727
HpyCH4III ACNGT 4 cut(s) 88, 100, 338, 698
HpyCH4V TGCA 8 cut(s) 78, 208, 389, 587, 644, 666, 726, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 125, 803
HpyF3I CTNAG 3 cut(s) 50, 468, 762
Hsp92I GRCGYC 1 cut(s) 234
Kpn2I TCCGGA 1 cut(s) 654
KpnI GGTACC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 162, 254, 651
LmnI GCTCC 2 cut(s) 265, 623
Lsp1109I GCAGC 2 cut(s) 90, 103
LweI GCATC 2 cut(s) 376, 596
MaeI CTAG 2 cut(s) 249, 630
MaeIII GTNAC 3 cut(s) 20, 94, 100
MalI GATC 3 cut(s) 164, 256, 653
MbiI CCGCTC 1 cut(s) 260
MboI GATC 3 cut(s) 162, 254, 651
MboII GAAGA 7 cut(s) 27, 318, 376, 588, 661, 695, 857
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 2 cut(s) 254, 651
MluCI AATT 2 cut(s) 392, 486
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 837
MroI TCCGGA 1 cut(s) 654
MseI TTAA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 3 cut(s) 156, 421, 655
MspR9I CCNGG 1 cut(s) 421
MunI CAATTG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 122, 125, 803
NciI CCSGG 1 cut(s) 421
NdeII GATC 3 cut(s) 162, 254, 651
NlaIV GGNNCC 2 cut(s) 246, 298
NmuCI GTSAC 2 cut(s) 94, 100
NspV TTCGAA 1 cut(s) 13
PkrI GCNGC 5 cut(s) 80, 118, 121, 124, 127
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 246, 298
PspPI GGNCC 1 cut(s) 244
PsuI RGATCY 2 cut(s) 254, 651
RsaI GTAC 6 cut(s) 160, 298, 335, 409, 741, 767
RsaNI GTAC 6 cut(s) 159, 297, 334, 408, 740, 766
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 5 cut(s) 79, 117, 120, 123, 126
Sau3AI GATC 3 cut(s) 162, 254, 651
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 421
SfaNI GCATC 2 cut(s) 376, 596
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 244
Sse9I AATT 2 cut(s) 392, 486
SsiI CCGC 5 cut(s) 114, 120, 123, 126, 258
SspMI CTAG 2 cut(s) 249, 630
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 2 cut(s) 248, 714
TaaI ACNGT 4 cut(s) 88, 100, 338, 698
TaqI TCGA 2 cut(s) 13, 574
TasI AATT 2 cut(s) 392, 486
TatI WGTACW 2 cut(s) 333, 765
TauI GCSGC 3 cut(s) 122, 125, 128
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 4 cut(s) 54, 210, 336, 651
TseFI GTSAC 2 cut(s) 94, 100
TseI GCWGC 2 cut(s) 78, 116
Tsp45I GTSAC 2 cut(s) 94, 100
TspDTI ATGAA 4 cut(s) 17, 504, 696, 837
TspGWI ACGGA 4 cut(s) 21, 82, 181, 277
TspRI CASTG 4 cut(s) 54, 210, 336, 651
VpaK11BI GGWCC 1 cut(s) 244
XmaJI CCTAGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 549
XspI CTAG 2 cut(s) 249, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.