Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000948.1

Orthogroup ID

OG0004090

Physical Location & Seq

Genomic Coordinates Reverse (-)

152183 .. 163767

Gene Structure 11585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000948.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atggcaatagggcgggttggggatggggatcacaatgccatccccatccctgggaacggtctcgatgatgtcctcgccctcctcggagcacaatgcagggccgacattgacgaattggggtttggccgaatgagggcagcagctggagtcgatgaggatgtcgtcgtcatcttcgtcccaggtgtcgccatagtgggaggcagtgagatgaaggattggacaaagtcgattccgaagaagccgaggagtgccagcggctccgcctccttcagtcacagtcgttcccaaacccgaattgaacccagtgccagcgcctccgcctccgcctccttcagtcacagactcacagtccttcccaaacccgatctgaacccagtgccagcgcctccgcctcctttagtcacagtccttcccaaactcgatctgagccagcgccttcgcctccgcctccgcctccgcctctgccttcccaaacttatctgcatggctactgatgggaatgctattgcaccattgccgacagctccagtggaaccaaaccctgcaacacctgatgctccggttaagcctacagcttcgacatctggtcgtcctccaagaccaacaacccgaatccttctcacttatcgtcagcctctctccgattgcagcaacaccgttaccgtcaccgtcaccgatagcaccgctgtcgccgccgcctccacgcagtcttccacggcctcctccggtacgatcaaacgccagaagcttactctttcctctgtcgccaagacactgcacgcctccttgactgccaaaaccgacgccgtttcggaccctaggagatccgctcctctggtttcctcctccgtttcaggtaccagcgattatgaggtttcagagccttcttcagtgtacagtcaaagacaaacgacattaaaaaggaagactacagggaaggaaaatgatgtacaatttagttgccctcgtacaccaaagacccggaatgttgggaaaaaaactaaacaagatggacataacatccaatcagagatggacagaacaccaattgcttccactcctacacctcgcatttcattatcaagttctgataccagtaatcgtgaggtatacgaacctcattcagtctatactcgaagacagactgcatcaaaaagaaatagcaaagggcaggaaaacattggagcttctagttgccctcctgcactgaagatccggaatacttgggataactcaaatgaagatggatacaacagtgtatcaaagaaatccaaggcttcttgcagaaagaaggttgtaccaactaaaaaagaagcttctgagtacacttcgccagaccttgaaaagcagagagcttactttgcagagcttgataaatatgaactgccagtagaggaggctgaagaatgggagttggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

473

Amino Acids

50.85

Weight (kDa)

9.39

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56250 AT3G56250 AT3G56250 AT3G56250
fragaria_vesca	FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540
malus_domestica	MD01G1162300.v1.1 MD07G1230300.v1.1
prunus_persica	Prupe.2G260200_v2.0.a1 Prupe.2G260200_v2.0.a1
pyrus_communis	pycom07g20780
rosa_chinensis	RchiOBHm_Chr1g0371541
rosa_laevigata	RLG00000026953
rosa_multiflora	Rmu_sc0000948.1_g000035 Rmu_sc0004208.1_g000019
rosa_roxburghii	Rroxscaffold_4G00285570 Rroxscaffold_4G00304530
rosa_rugosa	Rorug01G0365100 Rorug01G0365200
rosa_samantha	Rh1AG375100 Rh1BG338600 Rh1CG095700 Rh1CG351900 Rh1DG369600 Rh3AG109200 Rh3CG114500
rosa_wichuraiana	Rw1G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	857
AccB1I	GGYRCC	1 cut(s)	857
AccBSI	CCGCTC	1 cut(s)	830
AccI	GTMKAC	1 cut(s)	1110
AccIII	TCCGGA	1 cut(s)	1215
AclWI	GGATC	3 cut(s)	36, 819, 1207
AcoI	YGGCCR	1 cut(s)	124
AcuI	CTGAAG	5 cut(s)	253, 316, 873, 1229, 1422
AcyI	GRCGYC	1 cut(s)	804
AfaI	GTAC	7 cut(s)	730, 859, 896, 951, 970, 1299, 1325
AfiI	CCNNNNNNNGG	4 cut(s)	50, 51, 56, 133
AgsI	TTSAA	2 cut(s)	299, 1343
AhdI	GACNNNNNGTC	2 cut(s)	347, 585
AjnI	CCWGG	2 cut(s)	49, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	8 cut(s)	143, 524, 575, 748, 1187, 1316, 1355, 1369
AluI	AGCT	8 cut(s)	143, 524, 575, 748, 1187, 1316, 1355, 1369
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	3 cut(s)	36, 819, 1207
AlwNI	CAGNNNCTG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	1215
AoxI	GGCC	3 cut(s)	99, 124, 717
ApeKI	GCWGC	3 cut(s)	137, 140, 648
Asp718I	GGTACC	1 cut(s)	857
AspA2I	CCTAGG	1 cut(s)	818
AspLEI	GCGC	3 cut(s)	314, 385, 435
AspS9I	GGNCC	2 cut(s)	99, 814
AsuC2I	CCSGG	1 cut(s)	982
AsuHPI	GGTGA	2 cut(s)	658, 664
AvaII	GGWCC	1 cut(s)	814
AvrII	CCTAGG	1 cut(s)	818
BaeI	ACNNNNGTAYC	2 cut(s)	1240, 1273
BanI	GGYRCC	1 cut(s)	857
BbsI	GAAGAC	3 cut(s)	702, 932, 1144
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	149, 152, 660
BccI	CCATC	7 cut(s)	17, 47, 53, 488, 1004, 1027, 1238
BceAI	ACGGC	2 cut(s)	732, 791
BcgI	CGANNNNNNTGC	2 cut(s)	670, 704
BciT130I	CCWGG	2 cut(s)	51, 180
BciVI	GTATCC	1 cut(s)	1241
BcnI	CCSGG	1 cut(s)	982
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	819, 1191
BfmI	CTRYAG	2 cut(s)	570, 930
BfoI	RGCGCY	3 cut(s)	315, 386, 436
BfuI	GTATCC	1 cut(s)	1241
BisI	GCNGC	6 cut(s)	138, 141, 256, 649, 693, 696
BlnI	CCTAGG	1 cut(s)	818
BlsI	GCNGC	6 cut(s)	139, 142, 257, 650, 694, 697
Bme1390I	CCNGG	3 cut(s)	51, 180, 982
Bme18I	GGWCC	1 cut(s)	814
BmeRI	GACNNNNNGTC	2 cut(s)	347, 585
BmgT120I	GGNCC	2 cut(s)	99, 814
BmiI	GGNNCC	4 cut(s)	259, 534, 816, 859
BmrFI	CCNGG	3 cut(s)	51, 180, 982
BmrI	ACTGGG	2 cut(s)	297, 368
BmsI	GCATC	2 cut(s)	544, 1157
BmuI	ACTGGG	2 cut(s)	297, 368
BpiI	GAAGAC	3 cut(s)	702, 932, 1144
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpmI	CTGGAG	2 cut(s)	165, 510
BpuMI	CCSGG	1 cut(s)	982
BsaBI	GATNNNNATC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	804
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	8 cut(s)	49, 50, 82, 178, 242, 714, 818, 1272
BsaWI	WCCGGW	3 cut(s)	559, 725, 1215
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 51, 56, 133
Bse1I	ACTGG	5 cut(s)	303, 374, 527, 1095, 1388
Bse3DI	GCAATG	1 cut(s)	512
Bse8I	GATNNNNATC	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	1215
BseBI	CCWGG	2 cut(s)	51, 180
BseDI	CCNNGG	8 cut(s)	49, 50, 82, 178, 242, 714, 818, 1272
BseGI	GGATG	5 cut(s)	28, 39, 45, 163, 1020
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	4 cut(s)	50, 51, 56, 133
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	2 cut(s)	416, 1311
BseNI	ACTGG	5 cut(s)	303, 374, 527, 1095, 1388
BseRI	GAGGAG	6 cut(s)	71, 259, 712, 822, 835, 1409
BseXI	GCAGC	3 cut(s)	149, 152, 660
BsgI	GTGCAG	2 cut(s)	761, 1188
BshFI	GGCC	3 cut(s)	101, 126, 719
BshNI	GGYRCC	1 cut(s)	857
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	4 cut(s)	560, 726, 982, 1216
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	4 cut(s)	50, 51, 56, 133
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	3 cut(s)	101, 126, 719
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	1215
Bsp1407I	TGTACA	2 cut(s)	894, 949
Bsp143I	GATC	6 cut(s)	28, 364, 421, 732, 824, 1212
BspANI	GGCC	3 cut(s)	101, 126, 719
BspCNI	CTCAG	2 cut(s)	417, 1312
BspEI	TCCGGA	1 cut(s)	1215
BspLI	GGNNCC	4 cut(s)	259, 534, 816, 859
BspPI	GGATC	3 cut(s)	36, 819, 1207
BspT107I	GGYRCC	1 cut(s)	857
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	830
BsrDI	GCAATG	1 cut(s)	512
BsrGI	TGTACA	2 cut(s)	894, 949
BsrI	ACTGG	5 cut(s)	303, 374, 527, 1095, 1388
BssECI	CCNNGG	8 cut(s)	49, 50, 82, 178, 242, 714, 818, 1272
BssMI	GATC	6 cut(s)	28, 364, 421, 732, 824, 1212
BssNAI	GTATAC	1 cut(s)	1111
BssNI	GRCGYC	1 cut(s)	804
BssT1I	CCWWGG	2 cut(s)	818, 1272
Bst1107I	GTATAC	1 cut(s)	1111
Bst2UI	CCWGG	2 cut(s)	51, 180
Bst4CI	ACNGT	9 cut(s)	59, 278, 349, 406, 658, 664, 670, 899, 1256
BstACI	GRCGYC	1 cut(s)	804
BstAUI	TGTACA	2 cut(s)	894, 949
BstC8I	GCNNGC	5 cut(s)	253, 310, 381, 431, 780
BstDEI	CTNAG	2 cut(s)	425, 1320
BstDSI	CCRYGG	1 cut(s)	714
BstF5I	GGATG	5 cut(s)	28, 39, 45, 163, 1020
BstH2I	RGCGCY	3 cut(s)	315, 386, 436
BstHHI	GCGC	3 cut(s)	314, 385, 435
BstKTI	GATC	6 cut(s)	31, 367, 424, 735, 827, 1215
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	6 cut(s)	28, 364, 421, 732, 824, 1212
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 1361
BstNI	CCWGG	2 cut(s)	51, 180
BstSCI	CCNGG	3 cut(s)	49, 178, 980
BstSFI	CTRYAG	2 cut(s)	570, 930
BstV1I	GCAGC	3 cut(s)	149, 152, 660
BstV2I	GAAGAC	3 cut(s)	702, 932, 1144
BstX2I	RGATCY	2 cut(s)	824, 1212
BstYI	RGATCY	2 cut(s)	824, 1212
BstZ17I	GTATAC	1 cut(s)	1111
BsuI	GTATCC	1 cut(s)	1241
BsuRI	GGCC	3 cut(s)	101, 126, 719
BtgI	CCRYGG	1 cut(s)	714
BtsCI	GGATG	5 cut(s)	28, 39, 45, 163, 1020
BtsI	GCAGTG	2 cut(s)	208, 773
BtsIMutI	CAGTG	8 cut(s)	208, 310, 381, 534, 773, 897, 1205, 1261
Cac8I	GCNNGC	5 cut(s)	253, 310, 381, 431, 780
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	3 cut(s)	314, 385, 435
Cfr13I	GGNCC	2 cut(s)	99, 814
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	7 cut(s)	729, 858, 895, 950, 969, 1298, 1324
CviAII	CATG	1 cut(s)	484
CviQI	GTAC	7 cut(s)	729, 858, 895, 950, 969, 1298, 1324
DdeI	CTNAG	2 cut(s)	425, 1320
DpnI	GATC	6 cut(s)	30, 366, 423, 734, 826, 1214
DpnII	GATC	6 cut(s)	28, 364, 421, 732, 824, 1212
DriI	GACNNNNNGTC	2 cut(s)	347, 585
EaeI	YGGCCR	1 cut(s)	124
Eam1105I	GACNNNNNGTC	2 cut(s)	347, 585
EciI	GGCGGA	7 cut(s)	250, 307, 313, 378, 434, 440, 446
Eco130I	CCWWGG	2 cut(s)	818, 1272
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	814
Eco57I	CTGAAG	5 cut(s)	253, 316, 873, 1229, 1422
EcoRII	CCWGG	2 cut(s)	49, 178
EcoT14I	CCWWGG	2 cut(s)	818, 1272
ErhI	CCWWGG	2 cut(s)	818, 1272
FaeI	CATG	1 cut(s)	487
FaiI	YATR	7 cut(s)	191, 485, 870, 1017, 1111, 1131, 1380
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	483
FauI	CCCGC	1 cut(s)	6
FblI	GTMKAC	1 cut(s)	1110
Fnu4HI	GCNGC	6 cut(s)	138, 141, 256, 649, 693, 696
FokI	GGATG	5 cut(s)	26, 32, 35, 170, 1007
Fsp4HI	GCNGC	6 cut(s)	138, 141, 256, 649, 693, 696
FspBI	CTAG	2 cut(s)	819, 1191
GlaI	GCGC	3 cut(s)	313, 384, 434
GluI	GCNGC	6 cut(s)	138, 141, 256, 649, 693, 696
GsuI	CTGGAG	2 cut(s)	165, 510
HaeII	RGCGCY	3 cut(s)	315, 386, 436
HaeIII	GGCC	3 cut(s)	101, 126, 719
HapII	CCGG	4 cut(s)	560, 726, 982, 1216
HgaI	GACGC	1 cut(s)	812
HhaI	GCGC	3 cut(s)	314, 385, 435
Hin1I	GRCGYC	1 cut(s)	804
Hin1II	CATG	1 cut(s)	487
Hin6I	GCGC	3 cut(s)	312, 383, 433
HinP1I	GCGC	3 cut(s)	312, 383, 433
HindIII	AAGCTT	2 cut(s)	746, 1314
HinfI	GANTC	4 cut(s)	147, 229, 342, 612
HpaII	CCGG	4 cut(s)	560, 726, 982, 1216
HphI	GGTGA	2 cut(s)	658, 664
Hpy166II	GTNNAC	4 cut(s)	895, 971, 1111, 1326
Hpy188III	TCNNGA	3 cut(s)	62, 1103, 1216
Hpy8I	GTNNAC	4 cut(s)	895, 971, 1111, 1326
Hpy99I	CGWCG	2 cut(s)	167, 806
HpyCH4III	ACNGT	9 cut(s)	59, 278, 349, 406, 658, 664, 670, 899, 1256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 1361
HpyF3I	CTNAG	2 cut(s)	425, 1320
Hsp92I	GRCGYC	1 cut(s)	804
Hsp92II	CATG	1 cut(s)	487
HspAI	GCGC	3 cut(s)	312, 383, 433
Kpn2I	TCCGGA	1 cut(s)	1215
KpnI	GGTACC	1 cut(s)	861
Kzo9I	GATC	6 cut(s)	28, 364, 421, 732, 824, 1212
LmnI	GCTCC	6 cut(s)	86, 263, 529, 562, 835, 1184
Lsp1109I	GCAGC	3 cut(s)	149, 152, 660
LweI	GCATC	2 cut(s)	544, 1157
MaeI	CTAG	2 cut(s)	819, 1191
MaeIII	GTNAC	6 cut(s)	272, 335, 400, 658, 664, 670
MalI	GATC	6 cut(s)	30, 366, 423, 734, 826, 1214
MbiI	CCGCTC	1 cut(s)	830
MboI	GATC	6 cut(s)	28, 364, 421, 732, 824, 1212
MboII	GAAGA	9 cut(s)	163, 247, 702, 879, 937, 1149, 1222, 1253, 1415
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	2 cut(s)	824, 1212
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	4 cut(s)	113, 294, 953, 1047
MlyI	GAGTC	2 cut(s)	156, 336
MmeI	TCCRAC	1 cut(s)	1395
MroI	TCCGGA	1 cut(s)	1215
MseI	TTAA	2 cut(s)	564, 917
MspA1I	CMGCKG	3 cut(s)	143, 255, 686
MspI	CCGG	4 cut(s)	560, 726, 982, 1216
MspR9I	CCNGG	3 cut(s)	51, 180, 982
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	2 cut(s)	51, 180
MwoI	GCNNNNNNNGC	2 cut(s)	692, 1361
NciI	CCSGG	1 cut(s)	982
NdeII	GATC	6 cut(s)	28, 364, 421, 732, 824, 1212
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	4 cut(s)	259, 534, 816, 859
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	5 cut(s)	272, 335, 400, 664, 670
PasI	CCCWGGG	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	2 cut(s)	229, 612
PflFI	GACNNNGTC	1 cut(s)	223
PkrI	GCNGC	6 cut(s)	139, 142, 257, 650, 694, 697
PleI	GAGTC	2 cut(s)	155, 336
PpsI	GAGTC	2 cut(s)	155, 336
Psp6I	CCWGG	2 cut(s)	49, 178
PspGI	CCWGG	2 cut(s)	49, 178
PspN4I	GGNNCC	4 cut(s)	259, 534, 816, 859
PspPI	GGNCC	2 cut(s)	99, 814
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	824, 1212
PsyI	GACNNNGTC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	7 cut(s)	730, 859, 896, 951, 970, 1299, 1325
RsaNI	GTAC	7 cut(s)	729, 858, 895, 950, 969, 1298, 1324
SaqAI	TTAA	2 cut(s)	564, 917
SatI	GCNGC	6 cut(s)	138, 141, 256, 649, 693, 696
Sau3AI	GATC	6 cut(s)	28, 364, 421, 732, 824, 1212
Sau96I	GGNCC	2 cut(s)	99, 814
SchI	GAGTC	2 cut(s)	156, 336
ScrFI	CCNGG	3 cut(s)	51, 180, 982
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	2 cut(s)	544, 1157
SfcI	CTRYAG	2 cut(s)	570, 930
SinI	GGWCC	1 cut(s)	814
Sse9I	AATT	4 cut(s)	113, 294, 953, 1047
SspMI	CTAG	2 cut(s)	819, 1191
StyD4I	CCNGG	3 cut(s)	49, 178, 980
StyI	CCWWGG	2 cut(s)	818, 1272
TaaI	ACNGT	9 cut(s)	59, 278, 349, 406, 658, 664, 670, 899, 1256
TaqI	TCGA	6 cut(s)	63, 150, 227, 420, 578, 1135
TasI	AATT	4 cut(s)	113, 294, 953, 1047
TatI	WGTACW	3 cut(s)	894, 949, 1323
TauI	GCSGC	3 cut(s)	258, 695, 698
TfiI	GAWTC	2 cut(s)	229, 612
Tru1I	TTAA	2 cut(s)	564, 917
Tru9I	TTAA	2 cut(s)	564, 917
TscAI	CASTG	8 cut(s)	208, 310, 381, 534, 780, 897, 1212, 1261
TseFI	GTSAC	5 cut(s)	272, 335, 400, 664, 670
TseI	GCWGC	3 cut(s)	137, 140, 648
Tsp45I	GTSAC	5 cut(s)	272, 335, 400, 664, 670
TspDTI	ATGAA	4 cut(s)	224, 1065, 1254, 1395
TspGWI	ACGGA	1 cut(s)	838
TspRI	CASTG	8 cut(s)	208, 310, 381, 534, 780, 897, 1212, 1261
Tth111I	GACNNNGTC	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	814
XmaJI	CCTAGG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	1110
XspI	CTAG	2 cut(s)	819, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.