Rh1BG338600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004090
Physical Location & Seq
Forward (+)
47263626 .. 47267083
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG338600.1

Sequence Viewer

Length: 474 bp
ATGGAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTCACCGATAGCACCGCCGCCGCCGCCTCCACGCAGTCGTCCACGGCCTCCTCCGGTACGATCAAACGCCAGAACCCGACTCTTTCCTCCGTCGCCAAGACACTGCACGCCTCCTTGACTACCAAAACCGACGCCGTTTCGGACCCTAGGAGATCCGCTCCTTCTACTCCTCTGGCTTCCTCCTCCGTTTCAGGAAAAAAACTAAACAAGATGGACATAACATCCAATCTGAGATGGACAGAACACCAATTGCTTCCACTCATACACCTCGCATTTCATCATCAAGTTCTGAAGGTTGTACCAACTAAAAAAGAAGCTTCTGAGTACACTTCGCCAGACCTTGAAAAGCAGAGAGCTTACTTTGCGGAGCTTGATAAATATGAACTGCCAGTAGAGGAGGCTGAAGAATGGGAGTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.22

Weight (kDa)

6.52

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sororin_C PF25220 131 - 149 2.7e-06 Sororin C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 209
AciI CCGC 6 cut(s) 66, 69, 72, 75, 207, 416
AclWI GGATC 1 cut(s) 198
AcuI CTGAAG 3 cut(s) 44, 362, 474
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 3 cut(s) 109, 351, 377
AgsI TTSAA 1 cut(s) 395
AluBI AGCT 5 cut(s) 8, 22, 368, 407, 421
AluI AGCT 5 cut(s) 8, 22, 368, 407, 421
AlwI GGATC 1 cut(s) 198
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 193
AvrII CCTAGG 1 cut(s) 197
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 256, 279
BceAI ACGGC 2 cut(s) 111, 170
BfaI CTAG 1 cut(s) 198
BisI GCNGC 4 cut(s) 43, 69, 72, 75
BlnI CCTAGG 1 cut(s) 197
BlsI GCNGC 4 cut(s) 44, 70, 73, 76
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 93, 197
BsaWI WCCGGW 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 93, 197
BseGI GGATG 1 cut(s) 272
BseMII CTCAG 3 cut(s) 5, 272, 363
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 4 cut(s) 91, 210, 223, 461
BseXI GCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 140
BshFI GGCC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 105
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 111, 203
BspACI CCGC 6 cut(s) 66, 69, 72, 75, 207, 416
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 3 cut(s) 6, 273, 364
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 93, 197
BssMI GATC 2 cut(s) 111, 203
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 14, 281, 372
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 2 cut(s) 114, 206
BstMBI GATC 2 cut(s) 111, 203
BstMWI GCNNNNNNNGC 2 cut(s) 74, 413
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 11, 152
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 108, 350, 376
CviJI RGCY 9 cut(s) 8, 22, 28, 98, 227, 368, 407, 421, 452
CviKI_1 RGCY 9 cut(s) 8, 22, 28, 98, 227, 368, 407, 421, 452
CviQI GTAC 3 cut(s) 108, 350, 376
DdeI CTNAG 3 cut(s) 14, 281, 372
DpnI GATC 2 cut(s) 113, 205
DpnII GATC 2 cut(s) 111, 203
Eco130I CCWWGG 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 3 cut(s) 44, 362, 474
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaiI YATR 3 cut(s) 269, 314, 432
Fnu4HI GCNGC 4 cut(s) 43, 69, 72, 75
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 4 cut(s) 43, 69, 72, 75
FspBI CTAG 1 cut(s) 198
GluI GCNGC 4 cut(s) 43, 69, 72, 75
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 183
HindIII AAGCTT 2 cut(s) 6, 366
HinfI GANTC 1 cut(s) 130
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 93, 378
Hpy188I TCNGA 5 cut(s) 37, 193, 282, 342, 373
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 2 cut(s) 93, 378
Hpy99I CGWCG 2 cut(s) 146, 185
HpyAV CCTTC 2 cut(s) 222, 337
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 42, 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 413
HpyF3I CTNAG 3 cut(s) 14, 281, 372
Hsp92I GRCGYC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 111, 203
LmnI GCTCC 2 cut(s) 214, 418
LpnPI CCDG 6 cut(s) 118, 134, 209, 228, 399, 453
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 113, 205
MbiI CCGCTC 1 cut(s) 209
MboI GATC 2 cut(s) 111, 203
MboII GAAGA 1 cut(s) 467
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 1 cut(s) 203
MluCI AATT 1 cut(s) 299
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 447
MspI CCGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 74, 413
NdeII GATC 2 cut(s) 111, 203
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 52
PkrI GCNGC 4 cut(s) 44, 70, 73, 76
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 203
RsaI GTAC 3 cut(s) 109, 351, 377
RsaNI GTAC 3 cut(s) 108, 350, 376
SatI GCNGC 4 cut(s) 43, 69, 72, 75
Sau3AI GATC 2 cut(s) 111, 203
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 124
SetI ASST 8 cut(s) 10, 24, 321, 348, 370, 393, 409, 423
SinI GGWCC 1 cut(s) 193
Sse9I AATT 1 cut(s) 299
SsiI CCGC 6 cut(s) 66, 69, 72, 75, 207, 416
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 52
TasI AATT 1 cut(s) 299
TatI WGTACW 1 cut(s) 375
TauI GCSGC 3 cut(s) 71, 74, 77
TscAI CASTG 2 cut(s) 18, 159
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 317, 447
TspGWI ACGGA 2 cut(s) 130, 226
TspRI CASTG 2 cut(s) 18, 159
VpaK11BI GGWCC 1 cut(s) 193
XmaJI CCTAGG 1 cut(s) 197
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.