Rh1AG375100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004090
Physical Location & Seq
Forward (+)
60771841 .. 60775328
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG375100.1

Sequence Viewer

Length: 831 bp
ATGGAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTTACCGTCACCGTCACCGTCACCGATAGCACCGCTGCCGCCGCCGCCTCCACGCAGTCGTCCACGGCCTCCTCCGGTACGATCAAACGCCAGAACCCGACTCTTTCCTCCGTCCCCAAGACACTGCACGCCTCCTTGACTGCCAAAACCGACGCCGTTTCGGACCCTAGGAGATCCGCTCCTTCTACTCCTCTGGTTTCCTCCTCCGTTTCAGGTACCAGCGATTATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCATTAAAAAGGAAGACTACAGGGAAGGAAAATGATGTACAATTTAGTTGCCCTCGTACACCAAAGACCCGGAATGTTGGGAAAAAAACTAAACAAGATGGACATAACATCCAATCTGAGATGGACAGAACACCAATTGCTTCCACTCCTACACCTCGCATTTCATCATCAAGTTCTGATACCAGTAATCGTGAGGTATACGAACCTCATTCAGTCTATACTCGAAGACAGACTGCATCAAAAAGAAATAGCAAGGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCCGGAATACTTGGGATAACTCAAATGAAGATGGATACAACAGTCTATCAAAGAAATCCAAGGCTTCTTGCAGAAAGAAGGTTGTACCAACTAAAAAAGAAGCTTCTGAGTACACTTCGCCAGACCTTGAAAAGCAGAGAGCTTACTTTGCAGAGCTTGATAAATATGAACTGCCAGTAGAGGAGGCTGAAGAATGGGAGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.12

Weight (kDa)

9.21

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sororin_C PF25220 250 - 268 5.8e-06 Sororin C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 519
AccIII TCCGGA 1 cut(s) 624
AciI CCGC 5 cut(s) 84, 90, 93, 96, 228
AclWI GGATC 2 cut(s) 219, 616
AcuI CTGAAG 4 cut(s) 44, 282, 638, 831
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 7 cut(s) 130, 268, 305, 360, 379, 708, 734
AgsI TTSAA 1 cut(s) 752
AluBI AGCT 6 cut(s) 8, 22, 596, 725, 764, 778
AluI AGCT 6 cut(s) 8, 22, 596, 725, 764, 778
AlwI GGATC 2 cut(s) 219, 616
Aor13HI TCCGGA 1 cut(s) 624
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 42, 86
Asp718I GGTACC 1 cut(s) 266
AspA2I CCTAGG 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 3 cut(s) 52, 58, 64
AvaII GGWCC 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 218
BaeI ACNNNNGTAYC 2 cut(s) 649, 682
BanI GGYRCC 1 cut(s) 266
BbsI GAAGAC 2 cut(s) 341, 553
BbvI GCAGC 2 cut(s) 54, 73
BccI CCATC 3 cut(s) 413, 436, 647
BceAI ACGGC 3 cut(s) 132, 191, 336
BciVI GTATCC 1 cut(s) 650
BcnI CCSGG 1 cut(s) 391
BfaI CTAG 2 cut(s) 219, 600
BfmI CTRYAG 1 cut(s) 339
BfuI GTATCC 1 cut(s) 650
BisI GCNGC 5 cut(s) 43, 87, 90, 93, 96
BlnI CCTAGG 1 cut(s) 218
BlsI GCNGC 5 cut(s) 44, 88, 91, 94, 97
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 216, 268
BmrFI CCNGG 1 cut(s) 391
BmsI GCATC 1 cut(s) 566
BpiI GAAGAC 2 cut(s) 341, 553
BplI GAGNNNNNCTC 2 cut(s) 214, 246
BpuMI CCSGG 1 cut(s) 391
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 3 cut(s) 114, 218, 681
BsaWI WCCGGW 2 cut(s) 125, 624
Bse1I ACTGG 2 cut(s) 504, 797
BseAI TCCGGA 1 cut(s) 624
BseDI CCNNGG 3 cut(s) 114, 218, 681
BseGI GGATG 1 cut(s) 429
BseMII CTCAG 3 cut(s) 5, 429, 720
BseNI ACTGG 2 cut(s) 504, 797
BseRI GAGGAG 4 cut(s) 112, 231, 244, 818
BseXI GCAGC 2 cut(s) 54, 73
BsgI GTGCAG 2 cut(s) 161, 597
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 266
BsiSI CCGG 3 cut(s) 126, 391, 625
BslFI GGGAC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 624
Bsp1407I TGTACA 2 cut(s) 303, 358
Bsp143I GATC 3 cut(s) 132, 224, 621
BspACI CCGC 5 cut(s) 84, 90, 93, 96, 228
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 3 cut(s) 6, 430, 721
BspEI TCCGGA 1 cut(s) 624
BspLI GGNNCC 2 cut(s) 216, 268
BspPI GGATC 2 cut(s) 219, 616
BspT107I GGYRCC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 230
BsrGI TGTACA 2 cut(s) 303, 358
BsrI ACTGG 2 cut(s) 504, 797
BssECI CCNNGG 3 cut(s) 114, 218, 681
BssMI GATC 3 cut(s) 132, 224, 621
BssNAI GTATAC 1 cut(s) 520
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 2 cut(s) 218, 681
Bst1107I GTATAC 1 cut(s) 520
Bst4CI ACNGT 6 cut(s) 52, 58, 64, 70, 308, 665
BstACI GRCGYC 1 cut(s) 204
BstAUI TGTACA 2 cut(s) 303, 358
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 3 cut(s) 14, 438, 729
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 429
BstKTI GATC 3 cut(s) 135, 227, 624
BstMBI GATC 3 cut(s) 132, 224, 621
BstMWI GCNNNNNNNGC 3 cut(s) 92, 95, 770
BstSCI CCNGG 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 54, 73
BstV2I GAAGAC 2 cut(s) 341, 553
BstX2I RGATCY 2 cut(s) 224, 621
BstYI RGATCY 2 cut(s) 224, 621
BstZ17I GTATAC 1 cut(s) 520
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 429
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 4 cut(s) 11, 173, 306, 614
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 214
CseI GACGC 1 cut(s) 212
Csp6I GTAC 7 cut(s) 129, 267, 304, 359, 378, 707, 733
CviQI GTAC 7 cut(s) 129, 267, 304, 359, 378, 707, 733
DdeI CTNAG 3 cut(s) 14, 438, 729
DpnI GATC 3 cut(s) 134, 226, 623
DpnII GATC 3 cut(s) 132, 224, 621
Eco130I CCWWGG 2 cut(s) 218, 681
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 4 cut(s) 44, 282, 638, 831
EcoT14I CCWWGG 2 cut(s) 218, 681
ErhI CCWWGG 2 cut(s) 218, 681
FaiI YATR 5 cut(s) 279, 426, 520, 540, 789
FaqI GGGAC 1 cut(s) 149
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 5 cut(s) 43, 87, 90, 93, 96
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 5 cut(s) 43, 87, 90, 93, 96
FspBI CTAG 2 cut(s) 219, 600
GluI GCNGC 5 cut(s) 43, 87, 90, 93, 96
HaeIII GGCC 1 cut(s) 119
HapII CCGG 3 cut(s) 126, 391, 625
HgaI GACGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 204
HindIII AAGCTT 2 cut(s) 6, 723
HinfI GANTC 1 cut(s) 151
HpaII CCGG 3 cut(s) 126, 391, 625
HphI GGTGA 3 cut(s) 52, 58, 64
Hpy166II GTNNAC 5 cut(s) 114, 304, 380, 520, 735
Hpy188I TCNGA 6 cut(s) 37, 214, 289, 439, 499, 730
Hpy188III TCNNGA 2 cut(s) 512, 625
Hpy8I GTNNAC 5 cut(s) 114, 304, 380, 520, 735
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 243, 303, 340, 694
HpyCH4III ACNGT 6 cut(s) 52, 58, 64, 70, 308, 665
HpyCH4V TGCA 6 cut(s) 42, 178, 557, 614, 693, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 95, 770
HpyF3I CTNAG 3 cut(s) 14, 438, 729
Hsp92I GRCGYC 1 cut(s) 204
Kpn2I TCCGGA 1 cut(s) 624
KpnI GGTACC 1 cut(s) 270
Kzo9I GATC 3 cut(s) 132, 224, 621
LmnI GCTCC 2 cut(s) 235, 593
Lsp1109I GCAGC 2 cut(s) 54, 73
LweI GCATC 1 cut(s) 566
MaeI CTAG 2 cut(s) 219, 600
MaeIII GTNAC 4 cut(s) 52, 58, 64, 70
MalI GATC 3 cut(s) 134, 226, 623
MbiI CCGCTC 1 cut(s) 230
MboI GATC 3 cut(s) 132, 224, 621
MboII GAAGA 6 cut(s) 288, 346, 558, 631, 662, 824
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 2 cut(s) 224, 621
MluCI AATT 2 cut(s) 362, 456
MlyI GAGTC 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 804
MroI TCCGGA 1 cut(s) 624
MseI TTAA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 3 cut(s) 126, 391, 625
MspR9I CCNGG 1 cut(s) 391
MunI CAATTG 1 cut(s) 456
MwoI GCNNNNNNNGC 3 cut(s) 92, 95, 770
NciI CCSGG 1 cut(s) 391
NdeII GATC 3 cut(s) 132, 224, 621
NlaIV GGNNCC 2 cut(s) 216, 268
NmuCI GTSAC 3 cut(s) 58, 64, 70
PkrI GCNGC 5 cut(s) 44, 88, 91, 94, 97
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 216, 268
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 2 cut(s) 224, 621
RsaI GTAC 7 cut(s) 130, 268, 305, 360, 379, 708, 734
RsaNI GTAC 7 cut(s) 129, 267, 304, 359, 378, 707, 733
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 5 cut(s) 43, 87, 90, 93, 96
Sau3AI GATC 3 cut(s) 132, 224, 621
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 391
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 214
Sse9I AATT 2 cut(s) 362, 456
SsiI CCGC 5 cut(s) 84, 90, 93, 96, 228
SspMI CTAG 2 cut(s) 219, 600
StyD4I CCNGG 1 cut(s) 389
StyI CCWWGG 2 cut(s) 218, 681
TaaI ACNGT 6 cut(s) 52, 58, 64, 70, 308, 665
TaqI TCGA 1 cut(s) 544
TasI AATT 2 cut(s) 362, 456
TatI WGTACW 3 cut(s) 303, 358, 732
TauI GCSGC 3 cut(s) 92, 95, 98
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 4 cut(s) 18, 180, 306, 621
TseFI GTSAC 3 cut(s) 58, 64, 70
TseI GCWGC 2 cut(s) 42, 86
Tsp45I GTSAC 3 cut(s) 58, 64, 70
TspDTI ATGAA 3 cut(s) 474, 663, 804
TspGWI ACGGA 2 cut(s) 151, 247
TspRI CASTG 4 cut(s) 18, 180, 306, 621
VpaK11BI GGWCC 1 cut(s) 214
XmaJI CCTAGG 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 2 cut(s) 219, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.