Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004090

Physical Location & Seq

Genomic Coordinates Forward (+)

9212784 .. 9216845

Gene Structure 4062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAACGGAGTTCGAAGAAGTAACAGAAAAACAGAAATGCAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTTACCGTCACCGTCACCGATAGCACCGCTGCCGCCGCCGCCTCCACTCAGTCTTCCACGGCCTCCTCCGGTACGATCAAACGCCAGAAGCCGACTCTTTCCTCCGTCGCCAAGACACTGCACGCCTCCTTGACTGCCAAAACCGACGCCGTTTCGGACCCTAGGAGATCCGCTCCTTCTACTCCTCTGGTTTCCTCCTCCGTTTCAGGTACCAGCGATTATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCATTAAAAAGGAAGACTACAGGGAAGGAAAATGATGTACAATTTAGTTGCCCTCGTACACCAAAGACCCGGAATGTTGGGAAAAAAACTAAACAAGATGGACATAACATCCAATCAGAGATGGACAGAACACCAATTGCTTCCACTCCTACACCTCGCATTTCATCATCAAGTTCTGATACCAGTAATCGTGAGATATACGAACCTCATTCAGTCTATACTCGAAGACAGACTGCATCAAAAAGAAATAGCAAAGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCCGGAATACTTGGGATAACTCAAATGAAGATGGATACAACAGTGTATCAAAGAAATCCAAGGCTTCTTGCAGAAAGGTGTGTTTTTACTGTTTATCTTTCTTGGCACATGACTTATACACTCATTCGGTCAGTGTTTGTTCCGTCTCAGCCTTGTGCTTTTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

29.64

Weight (kDa)

9.73

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56250 AT3G56250 AT3G56250 AT3G56250
fragaria_vesca	FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540
malus_domestica	MD01G1162300.v1.1 MD07G1230300.v1.1
prunus_persica	Prupe.2G260200_v2.0.a1 Prupe.2G260200_v2.0.a1
pyrus_communis	pycom07g20780
rosa_chinensis	RchiOBHm_Chr1g0371541
rosa_laevigata	RLG00000026953
rosa_multiflora	Rmu_sc0000948.1_g000035 Rmu_sc0004208.1_g000019
rosa_roxburghii	Rroxscaffold_4G00285570 Rroxscaffold_4G00304530
rosa_rugosa	Rorug01G0365100 Rorug01G0365200
rosa_samantha	Rh1AG375100 Rh1BG338600 Rh1CG095700 Rh1CG351900 Rh1DG369600 Rh3AG109200 Rh3CG114500
rosa_wichuraiana	Rw1G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	260
AccIII	TCCGGA	1 cut(s)	654
AciI	CCGC	5 cut(s)	114, 120, 123, 126, 258
AclWI	GGATC	2 cut(s)	249, 646
AcuI	CTGAAG	3 cut(s)	80, 312, 668
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	5 cut(s)	160, 298, 335, 390, 409
AluBI	AGCT	3 cut(s)	44, 58, 626
AluI	AGCT	3 cut(s)	44, 58, 626
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	2 cut(s)	249, 646
Aor13HI	TCCGGA	1 cut(s)	654
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	78, 116
Asp718I	GGTACC	1 cut(s)	296
AspA2I	CCTAGG	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	88, 94
AsuII	TTCGAA	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	244
AvrII	CCTAGG	1 cut(s)	248
BaeI	ACNNNNGTAYC	2 cut(s)	679, 712
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	3 cut(s)	132, 371, 583
BbvI	GCAGC	2 cut(s)	90, 103
BccI	CCATC	3 cut(s)	443, 466, 677
BceAI	ACGGC	3 cut(s)	162, 221, 366
BciVI	GTATCC	1 cut(s)	680
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	802
BfaI	CTAG	2 cut(s)	249, 630
BfmI	CTRYAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	680
BisI	GCNGC	5 cut(s)	79, 117, 120, 123, 126
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	5 cut(s)	80, 118, 121, 124, 127
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	246, 298
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	596
BpiI	GAAGAC	3 cut(s)	132, 371, 583
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
Bpu14I	TTCGAA	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	144, 248, 711
BsaWI	WCCGGW	2 cut(s)	155, 654
Bse1I	ACTGG	1 cut(s)	534
BseAI	TCCGGA	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	144, 248, 711
BseGI	GGATG	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	41, 149, 813
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	3 cut(s)	142, 261, 274
BseXI	GCAGC	2 cut(s)	90, 103
BsgI	GTGCAG	2 cut(s)	191, 627
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	156, 421, 655
BsmAI	GTCTC	1 cut(s)	802
BsmBI	CGTCTC	1 cut(s)	802
BsnI	GGCC	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	13
Bsp13I	TCCGGA	1 cut(s)	654
Bsp1407I	TGTACA	2 cut(s)	333, 388
Bsp143I	GATC	3 cut(s)	162, 254, 651
BspACI	CCGC	5 cut(s)	114, 120, 123, 126, 258
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	3 cut(s)	42, 148, 812
BspEI	TCCGGA	1 cut(s)	654
BspLI	GGNNCC	2 cut(s)	246, 298
BspPI	GGATC	2 cut(s)	249, 646
BspT104I	TTCGAA	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	260
BsrGI	TGTACA	2 cut(s)	333, 388
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	144, 248, 711
BssMI	GATC	3 cut(s)	162, 254, 651
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	248, 711
Bst4CI	ACNGT	6 cut(s)	88, 94, 100, 338, 695, 743
BstACI	GRCGYC	1 cut(s)	234
BstAUI	TGTACA	2 cut(s)	333, 388
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	42, 210
BstDEI	CTNAG	3 cut(s)	50, 135, 799
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	3 cut(s)	165, 257, 654
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	3 cut(s)	162, 254, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 125
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	90, 103
BstV2I	GAAGAC	3 cut(s)	132, 371, 583
BstX2I	RGATCY	2 cut(s)	254, 651
BstYI	RGATCY	2 cut(s)	254, 651
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	459
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	6 cut(s)	47, 203, 336, 644, 700, 790
Cac8I	GCNNGC	2 cut(s)	42, 210
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	5 cut(s)	159, 297, 334, 389, 408
CviAII	CATG	1 cut(s)	761
CviJI	RGCY	9 cut(s)	44, 58, 64, 149, 178, 322, 626, 716, 803
CviKI_1	RGCY	9 cut(s)	44, 58, 64, 149, 178, 322, 626, 716, 803
CviQI	GTAC	5 cut(s)	159, 297, 334, 389, 408
DdeI	CTNAG	3 cut(s)	50, 135, 799
DpnI	GATC	3 cut(s)	164, 256, 653
DpnII	GATC	3 cut(s)	162, 254, 651
Eco130I	CCWWGG	2 cut(s)	248, 711
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	3 cut(s)	80, 312, 668
EcoT14I	CCWWGG	2 cut(s)	248, 711
ErhI	CCWWGG	2 cut(s)	248, 711
Esp3I	CGTCTC	1 cut(s)	802
FaeI	CATG	1 cut(s)	764
FaiI	YATR	7 cut(s)	309, 456, 550, 570, 762, 769, 816
FatI	CATG	1 cut(s)	760
Fnu4HI	GCNGC	5 cut(s)	79, 117, 120, 123, 126
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	5 cut(s)	79, 117, 120, 123, 126
FspBI	CTAG	2 cut(s)	249, 630
GluI	GCNGC	5 cut(s)	79, 117, 120, 123, 126
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	3 cut(s)	156, 421, 655
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	764
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	3 cut(s)	156, 421, 655
HphI	GGTGA	2 cut(s)	88, 94
Hpy166II	GTNNAC	2 cut(s)	334, 410
Hpy188I	TCNGA	5 cut(s)	73, 244, 319, 469, 529
Hpy188III	TCNNGA	2 cut(s)	542, 655
Hpy8I	GTNNAC	2 cut(s)	334, 410
Hpy99I	CGWCG	2 cut(s)	197, 236
HpyAV	CCTTC	3 cut(s)	273, 333, 370
HpyCH4III	ACNGT	6 cut(s)	88, 94, 100, 338, 695, 743
HpyCH4V	TGCA	6 cut(s)	40, 78, 208, 587, 644, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 125
HpyF3I	CTNAG	3 cut(s)	50, 135, 799
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	764
Kpn2I	TCCGGA	1 cut(s)	654
KpnI	GGTACC	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	162, 254, 651
LmnI	GCTCC	2 cut(s)	265, 623
Lsp1109I	GCAGC	2 cut(s)	90, 103
LweI	GCATC	1 cut(s)	596
MaeI	CTAG	2 cut(s)	249, 630
MaeIII	GTNAC	4 cut(s)	20, 88, 94, 100
MalI	GATC	3 cut(s)	164, 256, 653
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	3 cut(s)	162, 254, 651
MboII	GAAGA	7 cut(s)	27, 132, 318, 376, 588, 661, 692
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	2 cut(s)	254, 651
MluCI	AATT	2 cut(s)	392, 486
MlyI	GAGTC	1 cut(s)	175
MroI	TCCGGA	1 cut(s)	654
MseI	TTAA	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	156, 421, 655
MspR9I	CCNGG	1 cut(s)	421
MunI	CAATTG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	122, 125
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	3 cut(s)	162, 254, 651
NlaIII	CATG	1 cut(s)	764
NlaIV	GGNNCC	2 cut(s)	246, 298
NmuCI	GTSAC	2 cut(s)	94, 100
NspV	TTCGAA	1 cut(s)	13
PkrI	GCNGC	5 cut(s)	80, 118, 121, 124, 127
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	246, 298
PspPI	GGNCC	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	254, 651
RsaI	GTAC	5 cut(s)	160, 298, 335, 390, 409
RsaNI	GTAC	5 cut(s)	159, 297, 334, 389, 408
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	5 cut(s)	79, 117, 120, 123, 126
Sau3AI	GATC	3 cut(s)	162, 254, 651
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	421
SetI	ASST	8 cut(s)	46, 60, 298, 315, 508, 559, 628, 732
SfaNI	GCATC	1 cut(s)	596
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	13
SinI	GGWCC	1 cut(s)	244
Sse9I	AATT	2 cut(s)	392, 486
SsiI	CCGC	5 cut(s)	114, 120, 123, 126, 258
SspMI	CTAG	2 cut(s)	249, 630
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	2 cut(s)	248, 711
TaaI	ACNGT	6 cut(s)	88, 94, 100, 338, 695, 743
TaqI	TCGA	2 cut(s)	13, 574
TaqII	GACCGA	1 cut(s)	769
TasI	AATT	2 cut(s)	392, 486
TatI	WGTACW	2 cut(s)	333, 388
TauI	GCSGC	3 cut(s)	122, 125, 128
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	6 cut(s)	54, 210, 336, 651, 700, 790
TseFI	GTSAC	2 cut(s)	94, 100
TseI	GCWGC	2 cut(s)	78, 116
Tsp45I	GTSAC	2 cut(s)	94, 100
TspDTI	ATGAA	3 cut(s)	17, 504, 693
TspGWI	ACGGA	4 cut(s)	21, 181, 277, 784
TspRI	CASTG	6 cut(s)	54, 210, 336, 651, 700, 790
VpaK11BI	GGWCC	1 cut(s)	244
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	2 cut(s)	249, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.