RchiOBHm_Chr1g0371541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004090
Physical Location & Seq
Forward (+)
60678363 .. 60682257
3895 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59562

Sequence Viewer

Length: 867 bp
ATGAACAGAGTTCGAAGAGGTAACAGAAAAACAGAAATGGAAGCTTCACAGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTTACCGTCACCGTCACCGTCACCGATAGCACCGCTGCCGCCGCCGCCTCCACGCAGTCGTCCACGGCCTCCTCCGGTACGATCAAACGCCAGAACCCGACTCTTTCCTCCGTCCCCAAGACACTGCACGCCTCCTTGACTGCCAAAACCGAGGCCGTTTCGGACCCTAGGAGATCCGCTCCTTCTACTCCTCTGGTTTCCTCCTCCGTTTCAGGTACCAGCGATTATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCATTAAAAAGGAAGACTACAGGGAAGGAAAATGATGTACAATTTAGTTGCCCTCGTACACCAAAGACCCGGAATGTTGGGAAAAAAACTAAACAAGATGGACATAGCATCCAATCTGAGATGGACAGAACACCAATTGCTTCCACTCCTACACCTCGCATTTCATCATCAAGTTCTGATACCAGTAATCGTGAGGTATACGAACCTCATTCAGTCTATACTCGAAGACAGACTGCATCAAAAAGAAATAGCAAAGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCCGGAATACTTGGGATAACTCAAATGAAGATGGATACAACAGTCTATCAAAGAAATCCAAGGCTTCTTGCAGAAAGAAGGTTGTACCAACTAAAAAAGAAGCTTCTGAGTACACTTCGCCAGACCTTGAAAAGCAGAGAGCTTACTTTGCAGAGCTTGATAAATATGAACTGCCAGTAGAGGAGGCTGAAGAATGGGAGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.62

Weight (kDa)

9.5

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sororin_C PF25220 262 - 280 6.1e-06 Sororin C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 555
AccIII TCCGGA 1 cut(s) 660
AciI CCGC 5 cut(s) 120, 126, 129, 132, 264
AclWI GGATC 2 cut(s) 255, 652
AcuI CTGAAG 4 cut(s) 80, 318, 674, 867
AfaI GTAC 7 cut(s) 166, 304, 341, 396, 415, 744, 770
AgsI TTSAA 1 cut(s) 788
AluBI AGCT 6 cut(s) 44, 58, 632, 761, 800, 814
AluI AGCT 6 cut(s) 44, 58, 632, 761, 800, 814
AlwI GGATC 2 cut(s) 255, 652
Aor13HI TCCGGA 1 cut(s) 660
AoxI GGCC 2 cut(s) 153, 240
ApeKI GCWGC 2 cut(s) 78, 122
Asp718I GGTACC 1 cut(s) 302
AspA2I CCTAGG 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 3 cut(s) 88, 94, 100
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 250
AvrII CCTAGG 1 cut(s) 254
BaeI ACNNNNGTAYC 2 cut(s) 685, 718
BanI GGYRCC 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 377, 589
BbvI GCAGC 2 cut(s) 90, 109
BccI CCATC 3 cut(s) 449, 472, 683
BceAI ACGGC 3 cut(s) 168, 227, 372
BciVI GTATCC 1 cut(s) 686
BcnI CCSGG 1 cut(s) 427
BfaI CTAG 2 cut(s) 255, 636
BfmI CTRYAG 1 cut(s) 375
BfuI GTATCC 1 cut(s) 686
BisI GCNGC 5 cut(s) 79, 123, 126, 129, 132
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 5 cut(s) 80, 124, 127, 130, 133
Bme1390I CCNGG 1 cut(s) 427
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 252, 304
BmrFI CCNGG 1 cut(s) 427
BmsI GCATC 2 cut(s) 474, 602
BpiI GAAGAC 2 cut(s) 377, 589
BplI GAGNNNNNCTC 2 cut(s) 250, 282
Bpu14I TTCGAA 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 427
BsaJI CCNNGG 4 cut(s) 150, 237, 254, 717
BsaWI WCCGGW 2 cut(s) 161, 660
Bse1I ACTGG 2 cut(s) 540, 833
BseAI TCCGGA 1 cut(s) 660
BseDI CCNNGG 4 cut(s) 150, 237, 254, 717
BseGI GGATG 1 cut(s) 465
BseMII CTCAG 2 cut(s) 465, 756
BseNI ACTGG 2 cut(s) 540, 833
BseRI GAGGAG 4 cut(s) 148, 267, 280, 854
BseXI GCAGC 2 cut(s) 90, 109
BsgI GTGCAG 2 cut(s) 197, 633
BshFI GGCC 2 cut(s) 155, 242
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 3 cut(s) 162, 427, 661
BslFI GGGAC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 2 cut(s) 155, 242
Bsp119I TTCGAA 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 660
Bsp1407I TGTACA 2 cut(s) 339, 394
Bsp143I GATC 3 cut(s) 168, 260, 657
BspACI CCGC 5 cut(s) 120, 126, 129, 132, 264
BspANI GGCC 2 cut(s) 155, 242
BspCNI CTCAG 2 cut(s) 466, 757
BspEI TCCGGA 1 cut(s) 660
BspLI GGNNCC 2 cut(s) 252, 304
BspPI GGATC 2 cut(s) 255, 652
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 266
BsrGI TGTACA 2 cut(s) 339, 394
BsrI ACTGG 2 cut(s) 540, 833
BssECI CCNNGG 4 cut(s) 150, 237, 254, 717
BssMI GATC 3 cut(s) 168, 260, 657
BssNAI GTATAC 1 cut(s) 556
BssT1I CCWWGG 2 cut(s) 254, 717
Bst1107I GTATAC 1 cut(s) 556
Bst4CI ACNGT 6 cut(s) 88, 94, 100, 106, 344, 701
Bst6I CTCTTC 1 cut(s) 10
BstAUI TGTACA 2 cut(s) 339, 394
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 474, 765
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 465
BstKTI GATC 3 cut(s) 171, 263, 660
BstMBI GATC 3 cut(s) 168, 260, 657
BstMWI GCNNNNNNNGC 3 cut(s) 128, 131, 806
BstSCI CCNGG 1 cut(s) 425
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 90, 109
BstV2I GAAGAC 2 cut(s) 377, 589
BstX2I RGATCY 2 cut(s) 260, 657
BstYI RGATCY 2 cut(s) 260, 657
BstZ17I GTATAC 1 cut(s) 556
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 2 cut(s) 155, 242
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 465
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 3 cut(s) 209, 342, 650
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 7 cut(s) 165, 303, 340, 395, 414, 743, 769
CviQI GTAC 7 cut(s) 165, 303, 340, 395, 414, 743, 769
DdeI CTNAG 2 cut(s) 474, 765
DpnI GATC 3 cut(s) 170, 262, 659
DpnII GATC 3 cut(s) 168, 260, 657
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 254, 717
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 4 cut(s) 80, 318, 674, 867
EcoT14I CCWWGG 2 cut(s) 254, 717
ErhI CCWWGG 2 cut(s) 254, 717
FaiI YATR 5 cut(s) 315, 462, 556, 576, 825
FaqI GGGAC 1 cut(s) 185
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 5 cut(s) 79, 123, 126, 129, 132
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 5 cut(s) 79, 123, 126, 129, 132
FspBI CTAG 2 cut(s) 255, 636
GluI GCNGC 5 cut(s) 79, 123, 126, 129, 132
HaeIII GGCC 2 cut(s) 155, 242
HapII CCGG 3 cut(s) 162, 427, 661
HindIII AAGCTT 2 cut(s) 42, 759
HinfI GANTC 1 cut(s) 187
HpaII CCGG 3 cut(s) 162, 427, 661
HphI GGTGA 3 cut(s) 88, 94, 100
Hpy166II GTNNAC 5 cut(s) 150, 340, 416, 556, 771
Hpy188I TCNGA 6 cut(s) 73, 250, 325, 475, 535, 766
Hpy188III TCNNGA 2 cut(s) 548, 661
Hpy8I GTNNAC 5 cut(s) 150, 340, 416, 556, 771
HpyAV CCTTC 4 cut(s) 279, 339, 376, 730
HpyCH4III ACNGT 6 cut(s) 88, 94, 100, 106, 344, 701
HpyCH4V TGCA 6 cut(s) 78, 214, 593, 650, 729, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 131, 806
HpyF3I CTNAG 2 cut(s) 474, 765
Kpn2I TCCGGA 1 cut(s) 660
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 3 cut(s) 168, 260, 657
LmnI GCTCC 2 cut(s) 271, 629
Lsp1109I GCAGC 2 cut(s) 90, 109
LweI GCATC 2 cut(s) 474, 602
MaeI CTAG 2 cut(s) 255, 636
MaeIII GTNAC 5 cut(s) 20, 88, 94, 100, 106
MalI GATC 3 cut(s) 170, 262, 659
MbiI CCGCTC 1 cut(s) 266
MboI GATC 3 cut(s) 168, 260, 657
MboII GAAGA 7 cut(s) 27, 324, 382, 594, 667, 698, 860
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 2 cut(s) 260, 657
MluCI AATT 2 cut(s) 398, 492
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 840
MroI TCCGGA 1 cut(s) 660
MseI TTAA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 3 cut(s) 162, 427, 661
MspR9I CCNGG 1 cut(s) 427
MunI CAATTG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 128, 131, 806
NciI CCSGG 1 cut(s) 427
NdeII GATC 3 cut(s) 168, 260, 657
NlaIV GGNNCC 2 cut(s) 252, 304
NmuCI GTSAC 3 cut(s) 94, 100, 106
NspV TTCGAA 1 cut(s) 13
PkrI GCNGC 5 cut(s) 80, 124, 127, 130, 133
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 252, 304
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 2 cut(s) 260, 657
RsaI GTAC 7 cut(s) 166, 304, 341, 396, 415, 744, 770
RsaNI GTAC 7 cut(s) 165, 303, 340, 395, 414, 743, 769
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 5 cut(s) 79, 123, 126, 129, 132
Sau3AI GATC 3 cut(s) 168, 260, 657
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 427
SfaNI GCATC 2 cut(s) 474, 602
SfcI CTRYAG 1 cut(s) 375
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 250
Sse9I AATT 2 cut(s) 398, 492
SsiI CCGC 5 cut(s) 120, 126, 129, 132, 264
SspMI CTAG 2 cut(s) 255, 636
StyD4I CCNGG 1 cut(s) 425
StyI CCWWGG 2 cut(s) 254, 717
TaaI ACNGT 6 cut(s) 88, 94, 100, 106, 344, 701
TaqI TCGA 2 cut(s) 13, 580
TasI AATT 2 cut(s) 398, 492
TatI WGTACW 3 cut(s) 339, 394, 768
TauI GCSGC 3 cut(s) 128, 131, 134
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 3 cut(s) 216, 342, 657
TseFI GTSAC 3 cut(s) 94, 100, 106
TseI GCWGC 2 cut(s) 78, 122
Tsp45I GTSAC 3 cut(s) 94, 100, 106
TspDTI ATGAA 4 cut(s) 17, 510, 699, 840
TspGWI ACGGA 2 cut(s) 187, 283
TspRI CASTG 3 cut(s) 216, 342, 657
VpaK11BI GGWCC 1 cut(s) 250
XmaJI CCTAGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 2 cut(s) 255, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.