Rorug01G0365200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
48007421 .. 48009721
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0365200.1

Sequence Viewer

Length: 1431 bp
ATGGATGGGACAGGAGGCCATGCAATTGGGATTGATCTGGGAACAACATACTCATGTGTGGGAGTGTGGAAGCACAATCGTGTAGAAATAATAGTAAATGATCAGGGCAATAGGACAACTCCATCTCATGTTGCCTTCACTGATAAGAAGCGATTGGTAGGTGATGCAGCATTTAACCAGGTCATTGAAGGTCCTGGTGACAGGCCCTTGATTGCGGTTACCCAAAACGGTGAAGAAAAACAGTTTGCTGCAGAAGAAATCTCATCCATGGTTCTCGGAAAGATGCGAGAGATAGCTGAGGCCTACCTTGGCTCAACAGTAAGAAATGCAGTTATAACTGTCCCTGCTCACTTCAATGATTCACAGCGTCAGGCTACAAAAGATGCTGGTGGCATTGCTGGCCTAAATGTGATGCGGATTATAAATGAACCAACTGCTGCAGCCATTGCGTATGGCCTTGACAAGAAGGCCAGTGGGTATAGTAGGAGAAATGTGATGATATTTGATTTAGGTGGTGGTACTTTAGATGTCTCATTACTTACCATTATTGGTGGTGTCTTTGAAGTGAAGGCCGCAGCTGGAGACACTCACCTTGGAGGTGAAGACTTCGATAACAGAATGGTGAATTACTGTGTTGAGCAATTTAAGAGGAAACATAATTTGGACCTTAGTGGAAACTCCAGAGCTCTTAGTAGGTTACGAAATGCCTGCGAGAAGGCAAAGAGGAGACTTTCTTTTATGACAGAGACTGACATTGAAATTGACTGTTTGCATCAAGGTACTGATTTCTATACTAGTATTACTCGAGGAAAATTTGAACAACTGAACATGGATTTCTTCAACAAGTGTGTGGAGCCTGTGGAGAAGTGTCTGAAGGATGCAAACATGGGCAAAAGCAGTGTACATGATGTTGTTCTTGCTGGTGGCTCTTCTAGAATTCCAAAACTACAACAGATATTACAGGATTTGTTCCAAGGGATAGAGTTGTGCAAGGGCATTAATCCAGATGAGGCTGTGGCATATGGTGCTGCTGTTGAAGCTGCTGTATTAAGTGGGAATGGAAATGGGGAGCTTCAAGACTTCACTCTCTTGGATGTCACCCCTTTCTCACTTGGCGTTGAGACTGGTTATGATGGTAAGATGACAGTTCTGATTCCAAGAAACACTACAATTCCTGTCATGAAAAACCAATATTTAACTACTGGTTATGACAATCAAGTTGGGGCCCTATATAGGATTTATGAGGGCGAGAATGCAATGGCAGTATACAATAATCTTTTGGGTGAGTTTTCCCTAGACAACATTCCTCCAGCTCCCAAGGGTGTTCCTCAACTGAATACTTGCTTTCATATTGATTGTAATGGTTTATTGAGTGTGTTTGCTGATGAGATGTCGACCGGCCAGAAGAAAGGGATCACAATTAACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

51.68

Weight (kDa)

5.5

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 65 7.7e-21 Hsp70 protein
MreB_Mbl PF06723 8 - 344 7e-20 MreB/Mbl protein
HSP70 PF00012 61 - 475 3.9e-160 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 335, 422
AccI GTMKAC 2 cut(s) 1266, 1394
AciI CCGC 3 cut(s) 215, 415, 573
AclWI GGATC 1 cut(s) 1421
AcoI YGGCCR 1 cut(s) 1399
AcsI RAATTY 2 cut(s) 812, 936
AcuI CTGAAG 1 cut(s) 893
AfaI GTAC 3 cut(s) 520, 781, 903
AfiI CCNNNNNNNGG 1 cut(s) 1233
AgsI TTSAA 8 cut(s) 188, 355, 563, 758, 818, 841, 1037, 1076
AhlI ACTAGT 1 cut(s) 794
AjnI CCWGG 2 cut(s) 177, 193
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 6 cut(s) 296, 578, 686, 1040, 1072, 1313
AluI AGCT 6 cut(s) 296, 578, 686, 1040, 1072, 1313
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 5 cut(s) 535, 576, 721, 740, 1115
AlwI GGATC 1 cut(s) 1421
AlwNI CAGNNNCTG 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 804
AoxI GGCC 9 cut(s) 16, 203, 300, 400, 454, 468, 570, 1224, 1399
ApaI GGGCCC 1 cut(s) 1228
ApeKI GCWGC 7 cut(s) 167, 248, 437, 440, 575, 1028, 1040
ApoI RAATTY 2 cut(s) 812, 936
AseI ATTAAT 1 cut(s) 999
AspS9I GGNCC 5 cut(s) 191, 204, 664, 1224, 1225
AsuHPI GGTGA 8 cut(s) 173, 209, 242, 581, 611, 634, 1090, 1295
AvaI CYCGRG 1 cut(s) 804
AvaII GGWCC 2 cut(s) 191, 664
BaeGI GKGCMC 1 cut(s) 1228
BanII GRGCYC 2 cut(s) 688, 1228
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 688
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 7 cut(s) 179, 235, 424, 452, 587, 1015, 1027
BccI CCATC 2 cut(s) 130, 1127
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 2 cut(s) 179, 195
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 5 cut(s) 535, 576, 721, 740, 1115
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 3 cut(s) 795, 933, 1295
BfmI CTRYAG 2 cut(s) 249, 438
BisI GCNGC 8 cut(s) 168, 249, 438, 441, 573, 576, 1029, 1041
BlsI GCNGC 8 cut(s) 169, 250, 439, 442, 574, 577, 1030, 1042
Bme1390I CCNGG 2 cut(s) 179, 195
Bme18I GGWCC 2 cut(s) 191, 664
BmeT110I CYCGRG 1 cut(s) 804
BmgT120I GGNCC 5 cut(s) 191, 204, 664, 1224, 1225
BmiI GGNNCC 3 cut(s) 855, 1225, 1226
BmrFI CCNGG 2 cut(s) 179, 195
BmsI GCATC 6 cut(s) 154, 273, 373, 402, 781, 868
BpiI GAAGAC 1 cut(s) 609
BpmI CTGGAG 3 cut(s) 600, 664, 1293
Bpu10I CCTNAGC 1 cut(s) 297
BsaJI CCNNGG 5 cut(s) 267, 307, 592, 973, 1317
Bsc4I CCNNNNNNNGG 1 cut(s) 1233
Bse118I RCCGGY 1 cut(s) 1397
Bse1I ACTGG 3 cut(s) 471, 1129, 1207
Bse3DI GCAATG 3 cut(s) 393, 444, 1263
BseBI CCWGG 2 cut(s) 179, 195
BseDI CCNNGG 5 cut(s) 267, 307, 592, 973, 1317
BseGI GGATG 4 cut(s) 10, 263, 883, 1099
BseLI CCNNNNNNNGG 1 cut(s) 1233
BseMI GCAATG 3 cut(s) 393, 444, 1263
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 3 cut(s) 471, 1129, 1207
BseRI GAGGAG 1 cut(s) 739
BseSI GKGCMC 1 cut(s) 1228
BseXI GCAGC 7 cut(s) 179, 235, 424, 452, 587, 1015, 1027
Bsh1285I CGRYCG 1 cut(s) 1398
BshFI GGCC 9 cut(s) 18, 205, 302, 402, 456, 470, 572, 1226, 1401
BsiEI CGRYCG 1 cut(s) 1398
BsiHKAI GWGCWC 1 cut(s) 688
BsiHKCI CYCGRG 1 cut(s) 804
BsiSI CCGG 1 cut(s) 1398
BslFI GGGAC 2 cut(s) 22, 326
BslI CCNNNNNNNGG 1 cut(s) 1233
BsmAI GTCTC 5 cut(s) 535, 576, 721, 740, 1115
BsmFI GGGAC 2 cut(s) 22, 326
BsmI GAATGC 1 cut(s) 1258
BsnI GGCC 9 cut(s) 18, 205, 302, 402, 456, 470, 572, 1226, 1401
BsoBI CYCGRG 1 cut(s) 804
Bsp120I GGGCCC 1 cut(s) 1224
Bsp1286I GDGCHC 2 cut(s) 688, 1228
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 3 cut(s) 34, 100, 1413
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 3 cut(s) 215, 415, 573
BspANI GGCC 9 cut(s) 18, 205, 302, 402, 456, 470, 572, 1226, 1401
BspCNI CTCAG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 1179
BspLI GGNNCC 3 cut(s) 855, 1225, 1226
BspMAI CTGCAG 2 cut(s) 253, 442
BspPI GGATC 1 cut(s) 1421
BspQI GCTCTTC 1 cut(s) 934
BsrDI GCAATG 3 cut(s) 393, 444, 1263
BsrFI RCCGGY 1 cut(s) 1397
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 3 cut(s) 471, 1129, 1207
BssAI RCCGGY 1 cut(s) 1397
BssECI CCNNGG 5 cut(s) 267, 307, 592, 973, 1317
BssMI GATC 3 cut(s) 34, 100, 1413
BssNAI GTATAC 1 cut(s) 1267
BssT1I CCWWGG 5 cut(s) 267, 307, 592, 973, 1317
Bst1107I GTATAC 1 cut(s) 1267
Bst2UI CCWGG 2 cut(s) 179, 195
Bst4CI ACNGT 7 cut(s) 230, 243, 319, 340, 632, 767, 1147
Bst6I CTCTTC 1 cut(s) 934
BstAPI GCANNNNNTGC 2 cut(s) 446, 1025
BstAUI TGTACA 1 cut(s) 901
BstC8I GCNNGC 2 cut(s) 400, 709
BstDEI CTNAG 3 cut(s) 297, 668, 689
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 4 cut(s) 10, 263, 883, 1099
BstKTI GATC 3 cut(s) 37, 103, 1416
BstMAI GTCTC 5 cut(s) 535, 576, 721, 740, 1115
BstMBI GATC 3 cut(s) 34, 100, 1413
BstMCI CGRYCG 1 cut(s) 1398
BstMWI GCNNNNNNNGC 4 cut(s) 399, 446, 1025, 1037
BstNI CCWGG 2 cut(s) 179, 195
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 177, 193
BstSFI CTRYAG 2 cut(s) 249, 438
BstSLI GKGCMC 1 cut(s) 1228
BstV1I GCAGC 7 cut(s) 179, 235, 424, 452, 587, 1015, 1027
BstV2I GAAGAC 1 cut(s) 609
BstXI CCANNNNNNTGG 1 cut(s) 26
BstZ17I GTATAC 1 cut(s) 1267
BsuRI GGCC 9 cut(s) 18, 205, 302, 402, 456, 470, 572, 1226, 1401
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 4 cut(s) 10, 263, 883, 1099
BtsI GCAGTG 1 cut(s) 904
BtsIMutI CAGTG 3 cut(s) 138, 478, 904
Cac8I GCNNGC 2 cut(s) 400, 709
CaiI CAGNNNCTG 1 cut(s) 749
CciI TCATGA 1 cut(s) 1179
Cfr10I RCCGGY 1 cut(s) 1397
Cfr13I GGNCC 5 cut(s) 191, 204, 664, 1224, 1225
CseI GACGC 1 cut(s) 356
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 3 cut(s) 519, 780, 902
CviAII CATG 8 cut(s) 20, 54, 128, 268, 829, 886, 905, 1180
CviQI GTAC 3 cut(s) 519, 780, 902
DdeI CTNAG 3 cut(s) 297, 668, 689
DpnI GATC 3 cut(s) 36, 102, 1415
DpnII GATC 3 cut(s) 34, 100, 1413
EaeI YGGCCR 1 cut(s) 1399
Eam1104I CTCTTC 1 cut(s) 934
EarI CTCTTC 1 cut(s) 934
Ecl136II GAGCTC 1 cut(s) 686
Eco130I CCWWGG 5 cut(s) 267, 307, 592, 973, 1317
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 2 cut(s) 688, 1228
Eco47I GGWCC 2 cut(s) 191, 664
Eco53kI GAGCTC 1 cut(s) 686
Eco57I CTGAAG 1 cut(s) 893
Eco88I CYCGRG 1 cut(s) 804
Eco91I GGTNACC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 686
EcoO109I RGGNCCY 4 cut(s) 191, 204, 1224, 1225
EcoO65I GGTNACC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 936
EcoRII CCWGG 2 cut(s) 177, 193
EcoT14I CCWWGG 5 cut(s) 267, 307, 592, 973, 1317
EcoT38I GRGCYC 2 cut(s) 688, 1228
ErhI CCWWGG 5 cut(s) 267, 307, 592, 973, 1317
FaeI CATG 8 cut(s) 23, 57, 131, 271, 832, 889, 908, 1183
FaqI GGGAC 2 cut(s) 22, 326
FatI CATG 8 cut(s) 19, 53, 127, 267, 828, 885, 904, 1179
FauNDI CATATG 1 cut(s) 1021
FbaI TGATCA 1 cut(s) 100
FblI GTMKAC 2 cut(s) 1266, 1394
Fnu4HI GCNGC 8 cut(s) 168, 249, 438, 441, 573, 576, 1029, 1041
FokI GGATG 4 cut(s) 17, 250, 890, 1106
FriOI GRGCYC 2 cut(s) 688, 1228
Fsp4HI GCNGC 8 cut(s) 168, 249, 438, 441, 573, 576, 1029, 1041
FspBI CTAG 3 cut(s) 795, 933, 1295
GluI GCNGC 8 cut(s) 168, 249, 438, 441, 573, 576, 1029, 1041
GsuI CTGGAG 3 cut(s) 600, 664, 1293
HaeIII GGCC 9 cut(s) 18, 205, 302, 402, 456, 470, 572, 1226, 1401
HapII CCGG 1 cut(s) 1398
HgaI GACGC 1 cut(s) 356
Hin1II CATG 8 cut(s) 23, 57, 131, 271, 832, 889, 908, 1183
HincII GTYRAC 1 cut(s) 1395
HindII GTYRAC 1 cut(s) 1395
HinfI GANTC 2 cut(s) 359, 1153
HpaII CCGG 1 cut(s) 1398
HphI GGTGA 8 cut(s) 173, 209, 242, 581, 611, 634, 1090, 1295
Hpy166II GTNNAC 3 cut(s) 902, 1267, 1395
Hpy188I TCNGA 3 cut(s) 278, 873, 1152
Hpy188III TCNNGA 5 cut(s) 681, 933, 1004, 1076, 1180
Hpy8I GTNNAC 3 cut(s) 902, 1267, 1395
HpyAV CCTTC 6 cut(s) 145, 182, 460, 562, 709, 868
HpyCH4III ACNGT 7 cut(s) 230, 243, 319, 340, 632, 767, 1147
HpyCH4V TGCA 9 cut(s) 23, 167, 251, 329, 440, 772, 881, 990, 1256
HpyF10VI GCNNNNNNNGC 4 cut(s) 399, 446, 1025, 1037
HpyF3I CTNAG 3 cut(s) 297, 668, 689
Hsp92II CATG 8 cut(s) 23, 57, 131, 271, 832, 889, 908, 1183
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 34, 100, 1413
LguI GCTCTTC 1 cut(s) 934
LmnI GCTCC 3 cut(s) 853, 1069, 1318
Lsp1109I GCAGC 7 cut(s) 179, 235, 424, 452, 587, 1015, 1027
LweI GCATC 6 cut(s) 154, 273, 373, 402, 781, 868
MabI ACCWGGT 1 cut(s) 177
MaeI CTAG 3 cut(s) 795, 933, 1295
MaeIII GTNAC 4 cut(s) 197, 217, 696, 1096
MalI GATC 3 cut(s) 36, 102, 1415
MboI GATC 3 cut(s) 34, 100, 1413
MboII GAAGA 6 cut(s) 245, 266, 614, 829, 921, 1417
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 2 cut(s) 688, 1228
MluCI AATT 9 cut(s) 24, 625, 641, 658, 759, 812, 936, 1170, 1419
MseI TTAA 6 cut(s) 174, 645, 999, 1049, 1196, 1422
MslI CAYNNNNRTG 3 cut(s) 52, 78, 354
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 1 cut(s) 1398
MspR9I CCNGG 2 cut(s) 179, 195
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 2 cut(s) 179, 195
MwoI GCNNNNNNNGC 4 cut(s) 399, 446, 1025, 1037
NcoI CCATGG 1 cut(s) 267
NdeI CATATG 1 cut(s) 1021
NdeII GATC 3 cut(s) 34, 100, 1413
NlaIII CATG 8 cut(s) 23, 57, 131, 271, 832, 889, 908, 1183
NlaIV GGNNCC 3 cut(s) 855, 1225, 1226
NmuCI GTSAC 2 cut(s) 197, 1096
OliI CACNNNNGTG 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 804
PagI TCATGA 1 cut(s) 1179
PceI AGGCCT 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 934
PctI GAATGC 1 cut(s) 1258
PfeI GAWTC 2 cut(s) 359, 1153
PkrI GCNGC 8 cut(s) 169, 250, 439, 442, 574, 577, 1030, 1042
PpuMI RGGWCCY 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 999
PsiI TTATAA 2 cut(s) 335, 422
Psp124BI GAGCTC 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 177, 193
PspEI GGTNACC 1 cut(s) 217
PspGI CCWGG 2 cut(s) 177, 193
PspN4I GGNNCC 3 cut(s) 855, 1225, 1226
PspOMI GGGCCC 1 cut(s) 1224
PspPI GGNCC 5 cut(s) 191, 204, 664, 1224, 1225
PspPPI RGGWCCY 1 cut(s) 191
PspXI VCTCGAGB 1 cut(s) 804
PstI CTGCAG 2 cut(s) 253, 442
PstNI CAGNNNCTG 1 cut(s) 749
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 3 cut(s) 520, 781, 903
RsaNI GTAC 3 cut(s) 519, 780, 902
RseI CAYNNNNRTG 3 cut(s) 52, 78, 354
SacI GAGCTC 1 cut(s) 688
SalI GTCGAC 1 cut(s) 1393
SapI GCTCTTC 1 cut(s) 934
SaqAI TTAA 6 cut(s) 174, 645, 999, 1049, 1196, 1422
SatI GCNGC 8 cut(s) 168, 249, 438, 441, 573, 576, 1029, 1041
Sau3AI GATC 3 cut(s) 34, 100, 1413
Sau96I GGNCC 5 cut(s) 191, 204, 664, 1224, 1225
ScrFI CCNGG 2 cut(s) 179, 195
SduI GDGCHC 2 cut(s) 688, 1228
SexAI ACCWGGT 1 cut(s) 177
SfaNI GCATC 6 cut(s) 154, 273, 373, 402, 781, 868
SfcI CTRYAG 2 cut(s) 249, 438
Sfr274I CTCGAG 1 cut(s) 804
SinI GGWCC 2 cut(s) 191, 664
SlaI CTCGAG 1 cut(s) 804
SmiMI CAYNNNNRTG 3 cut(s) 52, 78, 354
SmlI CTYRAG 1 cut(s) 804
SmoI CTYRAG 1 cut(s) 804
SpeI ACTAGT 1 cut(s) 794
Sse9I AATT 9 cut(s) 24, 625, 641, 658, 759, 812, 936, 1170, 1419
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 3 cut(s) 215, 415, 573
SspI AATATT 1 cut(s) 1193
SspMI CTAG 3 cut(s) 795, 933, 1295
SstI GAGCTC 1 cut(s) 688
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 2 cut(s) 177, 193
StyI CCWWGG 5 cut(s) 267, 307, 592, 973, 1317
TaaI ACNGT 7 cut(s) 230, 243, 319, 340, 632, 767, 1147
TaqI TCGA 3 cut(s) 609, 805, 1394
TasI AATT 9 cut(s) 24, 625, 641, 658, 759, 812, 936, 1170, 1419
TatI WGTACW 1 cut(s) 901
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 2 cut(s) 359, 1153
Tru1I TTAA 6 cut(s) 174, 645, 999, 1049, 1196, 1422
Tru9I TTAA 6 cut(s) 174, 645, 999, 1049, 1196, 1422
TscAI CASTG 3 cut(s) 145, 478, 904
TseFI GTSAC 2 cut(s) 197, 1096
TseI GCWGC 7 cut(s) 167, 248, 437, 440, 575, 1028, 1040
Tsp45I GTSAC 2 cut(s) 197, 1096
TspDTI ATGAA 3 cut(s) 441, 1196, 1337
TspRI CASTG 3 cut(s) 145, 478, 904
VpaK11BI GGWCC 2 cut(s) 191, 664
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 2 cut(s) 812, 936
XbaI TCTAGA 1 cut(s) 932
XhoI CTCGAG 1 cut(s) 804
XmiI GTMKAC 2 cut(s) 1266, 1394
XspI CTAG 3 cut(s) 795, 933, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.