Rh1CG095700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004090
Physical Location & Seq
Forward (+)
20544449 .. 20544709
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG095700.1

Sequence Viewer

Length: 261 bp
ATGGAAGCTTCACTGAGAGTCCAGAAGCCTCTCTCCGATTGCAGCAACACCGCCGCCGCCTCTACGCAGTCGTCCACGGCCTCCTCCAGCACGATCATACTCCAGAACCCGACTCTTTCCTCCGTCGCCAAAACTACCAAAAACGACGCCGTTTCGAACCCTAGGGGATCCGCTCCTTCTACTCCTATGGTTTCAGGTACCAGCGATTATGAGGTTGCAGAGCGCCTTGTTCAGTGTACAGTCGGAGACAAACGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

8.92

Weight (kDa)

7.78

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 173
AciI CCGC 4 cut(s) 51, 54, 57, 171
AclWI GGATC 2 cut(s) 162, 175
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 199, 238
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 2 cut(s) 162, 175
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 42
Asp718I GGTACC 1 cut(s) 197
AspA2I CCTAGG 1 cut(s) 161
AspLEI GCGC 1 cut(s) 225
AsuII TTCGAA 1 cut(s) 155
AvrII CCTAGG 1 cut(s) 161
BamHI GGATCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 54
BceAI ACGGC 2 cut(s) 93, 134
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 3 cut(s) 43, 54, 57
BlnI CCTAGG 1 cut(s) 161
BlsI GCNGC 3 cut(s) 44, 55, 58
BmiI GGNNCC 2 cut(s) 169, 199
BpmI CTGGAG 2 cut(s) 70, 86
Bpu14I TTCGAA 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 75, 161
BseDI CCNNGG 2 cut(s) 75, 161
BseMII CTCAG 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 240
BsnI GGCC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 236
Bsp143I GATC 2 cut(s) 93, 167
BspACI CCGC 4 cut(s) 51, 54, 57, 171
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 169, 199
BspPI GGATC 2 cut(s) 162, 175
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 75, 161
BssMI GATC 2 cut(s) 93, 167
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 2 cut(s) 96, 170
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 93, 167
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 11, 239
CfoI GCGC 1 cut(s) 225
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 198, 237
CviJI RGCY 3 cut(s) 8, 28, 80
CviKI_1 RGCY 3 cut(s) 8, 28, 80
CviQI GTAC 2 cut(s) 198, 237
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 95, 169
DpnII GATC 2 cut(s) 93, 167
Eco130I CCWWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaiI YATR 3 cut(s) 98, 188, 210
Fnu4HI GCNGC 3 cut(s) 43, 54, 57
Fsp4HI GCNGC 3 cut(s) 43, 54, 57
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 224
GluI GCNGC 3 cut(s) 43, 54, 57
GsuI CTGGAG 2 cut(s) 70, 86
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 1 cut(s) 80
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 147
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 2 cut(s) 18, 112
Hpy166II GTNNAC 2 cut(s) 75, 237
Hpy188I TCNGA 2 cut(s) 37, 245
Hpy188III TCNNGA 2 cut(s) 22, 103
Hpy8I GTNNAC 2 cut(s) 75, 237
Hpy99I CGWCG 2 cut(s) 128, 149
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 42, 218
HpyF3I CTNAG 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 147
HspAI GCGC 1 cut(s) 223
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 93, 167
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 5 cut(s) 35, 100, 116, 180, 214
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 162
MalI GATC 2 cut(s) 95, 169
MbiI CCGCTC 1 cut(s) 173
MboI GATC 2 cut(s) 93, 167
MflI RGATCY 1 cut(s) 167
MlyI GAGTC 2 cut(s) 27, 106
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 6 cut(s) 39, 70, 91, 94, 130, 205
NdeII GATC 2 cut(s) 93, 167
NlaIV GGNNCC 2 cut(s) 169, 199
NspV TTCGAA 1 cut(s) 155
PkrI GCNGC 3 cut(s) 44, 55, 58
PleI GAGTC 2 cut(s) 26, 106
PpsI GAGTC 2 cut(s) 26, 106
PspN4I GGNNCC 2 cut(s) 169, 199
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 2 cut(s) 199, 238
RsaNI GTAC 2 cut(s) 198, 237
SatI GCNGC 3 cut(s) 43, 54, 57
Sau3AI GATC 2 cut(s) 93, 167
SchI GAGTC 2 cut(s) 27, 106
SetI ASST 3 cut(s) 10, 199, 216
SfuI TTCGAA 1 cut(s) 155
SsiI CCGC 4 cut(s) 51, 54, 57, 171
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 155
TatI WGTACW 1 cut(s) 236
TauI GCSGC 2 cut(s) 56, 59
TscAI CASTG 2 cut(s) 18, 239
TseI GCWGC 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 18, 239
XmaJI CCTAGG 1 cut(s) 161
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.