Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004090

Physical Location & Seq

Genomic Coordinates Forward (+)

22766748 .. 22769035

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAAGCTGAGCCATCCAGAAGAAGACTGAGAGCCCCAAACCCTCTCTCCGATTGCACCAACACCATTTCCTCCACCACCACCACCGCCACCACCCTAGCCACAGCCGCCTCTTCGCAGTCCTCGTCCGCCTCCACCGTCAAGCTCAAACGCCAGAATCCCAAGCTCGCCTCCGTCACCGGGAACCTCCTCTCCGCTGTAGACCCTAAGCCCTCCGTAGTTCCGCCTCCGATTCCCTCCACTCCTCCTCGCCCTCGTCCCGTCTCGTCCTCCGCTTCTGGTACCAGCGATCGTGAGGCTCTTGAGCCTTGTTCAGTGTATACTCGAAGACAGACTGCAGTAAAAGGGGAGGGTAAAGGGAAGGAAAACGCTGGATCTTGGAGTTGTCCTCCTGCACCAAAGACCCGGAATGCTGGGAAAAAAACAAAGGCAAGCGGATGCAACAGTGTATCCAAGGAATCCATGGCTCCTCACAACAAGAAGCAGCATGCGGTACCTGCTGGGAAAGAACATTCCGAGAAGCAAAGAGCTTTTTTTTATGAGATTGAACAAAAGAGAAAATACTTCGCAGAGATCGATGCATTTGAACTGTCAGAAGAGGAAGTCGATTCAGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.07

Weight (kDa)

9.49

Isoelectric Point (pI)

61.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56250 AT3G56250 AT3G56250 AT3G56250
fragaria_vesca	FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540 FvH4_7g25540
malus_domestica	MD01G1162300.v1.1 MD07G1230300.v1.1
prunus_persica	Prupe.2G260200_v2.0.a1 Prupe.2G260200_v2.0.a1
pyrus_communis	pycom07g20780
rosa_chinensis	RchiOBHm_Chr1g0371541
rosa_laevigata	RLG00000026953
rosa_multiflora	Rmu_sc0000948.1_g000035 Rmu_sc0004208.1_g000019
rosa_roxburghii	Rroxscaffold_4G00285570 Rroxscaffold_4G00304530
rosa_rugosa	Rorug01G0365100 Rorug01G0365200
rosa_samantha	Rh1AG375100 Rh1BG338600 Rh1CG095700 Rh1CG351900 Rh1DG369600 Rh3AG109200 Rh3CG114500
rosa_wichuraiana	Rw1G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	505
Acc65I	GGTACC	2 cut(s)	281, 493
AccB1I	GGYRCC	2 cut(s)	281, 493
AccI	GTMKAC	2 cut(s)	201, 320
AciI	CCGC	8 cut(s)	87, 108, 129, 195, 224, 273, 435, 491
AclWI	GGATC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	283, 495
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	548, 587
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	8, 145, 166, 530
AluI	AGCT	4 cut(s)	8, 145, 166, 530
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	484
Asp718I	GGTACC	2 cut(s)	281, 493
AsuC2I	CCSGG	2 cut(s)	181, 406
AsuHPI	GGTGA	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	281, 493
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	31, 334
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	460
BcnI	CCSGG	2 cut(s)	181, 406
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	198, 336
BfuAI	ACCTGC	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	2 cut(s)	108, 485
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	2 cut(s)	109, 486
Bme1390I	CCNGG	2 cut(s)	181, 406
BmiI	GGNNCC	4 cut(s)	185, 283, 468, 495
BmrFI	CCNGG	2 cut(s)	181, 406
BmsI	GCATC	2 cut(s)	428, 568
BpiI	GAAGAC	2 cut(s)	31, 334
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	2 cut(s)	181, 406
Bsa29I	ATCGAT	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	453, 462
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	453, 462
BseGI	GGATG	2 cut(s)	14, 443
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	4 cut(s)	179, 234, 237, 459
BseXI	GCAGC	1 cut(s)	496
BseYI	CCCAGC	2 cut(s)	413, 500
BsgI	GTGCAG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	292
BshNI	GGYRCC	2 cut(s)	281, 493
BshVI	ATCGAT	1 cut(s)	576
BsiEI	CGRYCG	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	180, 406
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	268
BsmBI	CGTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	289, 374, 573
Bsp1720I	GCTNAGC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	8 cut(s)	87, 108, 129, 195, 224, 273, 435, 491
BspCNI	CTCAG	1 cut(s)	21
BspDI	ATCGAT	1 cut(s)	576
BspLI	GGNNCC	4 cut(s)	185, 283, 468, 495
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	382
BspT107I	GGYRCC	2 cut(s)	281, 493
BssECI	CCNNGG	2 cut(s)	453, 462
BssMI	GATC	3 cut(s)	289, 374, 573
BssNAI	GTATAC	1 cut(s)	321
BssT1I	CCWWGG	2 cut(s)	453, 462
Bst1107I	GTATAC	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	139, 446, 591
Bst6I	CTCTTC	2 cut(s)	118, 591
BstC8I	GCNNGC	3 cut(s)	168, 433, 489
BstDEI	CTNAG	3 cut(s)	9, 29, 207
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	14, 443
BstKTI	GATC	3 cut(s)	292, 377, 576
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	3 cut(s)	289, 374, 573
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 497
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	179, 404
BstSFI	CTRYAG	2 cut(s)	198, 336
BstV1I	GCAGC	1 cut(s)	496
BstV2I	GAAGAC	2 cut(s)	31, 334
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BstZ17I	GTATAC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	460
BsuTUI	ATCGAT	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	14, 443
BtsIMutI	CAGTG	2 cut(s)	321, 451
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	3 cut(s)	168, 433, 489
ClaI	ATCGAT	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	282, 494
CviAII	CATG	2 cut(s)	463, 488
CviQI	GTAC	2 cut(s)	282, 494
DdeI	CTNAG	3 cut(s)	9, 29, 207
DpnI	GATC	3 cut(s)	291, 376, 575
DpnII	GATC	3 cut(s)	289, 374, 573
Eam1104I	CTCTTC	2 cut(s)	118, 591
EarI	CTCTTC	2 cut(s)	118, 591
EciI	GGCGGA	2 cut(s)	118, 213
Eco130I	CCWWGG	2 cut(s)	453, 462
Eco24I	GRGCYC	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	453, 462
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	453, 462
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	466, 491
FaiI	YATR	4 cut(s)	321, 464, 489, 540
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	462, 487
FblI	GTMKAC	2 cut(s)	201, 320
Fnu4HI	GCNGC	2 cut(s)	108, 485
FokI	GGATG	1 cut(s)	450
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	108, 485
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	2 cut(s)	108, 485
GsaI	CCCAGC	2 cut(s)	417, 504
HapII	CCGG	2 cut(s)	180, 406
Hin1II	CATG	2 cut(s)	466, 491
HinfI	GANTC	4 cut(s)	157, 232, 458, 608
HpaII	CCGG	2 cut(s)	180, 406
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	202, 321
Hpy188I	TCNGA	4 cut(s)	52, 231, 517, 595
Hpy188III	TCNNGA	3 cut(s)	18, 293, 302
Hpy8I	GTNNAC	2 cut(s)	202, 321
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	3 cut(s)	139, 446, 591
HpyCH4V	TGCA	5 cut(s)	57, 338, 395, 441, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 497
HpyF3I	CTNAG	3 cut(s)	9, 29, 207
Hsp92II	CATG	2 cut(s)	466, 491
KpnI	GGTACC	2 cut(s)	285, 497
Kzo9I	GATC	3 cut(s)	289, 374, 573
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	2 cut(s)	428, 568
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	291, 376, 575
MboI	GATC	3 cut(s)	289, 374, 573
MboII	GAAGA	5 cut(s)	33, 36, 105, 339, 608
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	37
Mph1103I	ATGCAT	1 cut(s)	583
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	180, 406
MspR9I	CCNGG	2 cut(s)	181, 406
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	2 cut(s)	107, 497
NciI	CCSGG	2 cut(s)	181, 406
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	3 cut(s)	289, 374, 573
NlaIII	CATG	2 cut(s)	466, 491
NlaIV	GGNNCC	4 cut(s)	185, 283, 468, 495
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	1 cut(s)	491
PaeI	GCATGC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	2 cut(s)	122, 573
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	4 cut(s)	157, 232, 458, 608
PkrI	GCNGC	2 cut(s)	109, 486
Ple19I	CGATCG	1 cut(s)	292
PspFI	CCCAGC	2 cut(s)	413, 500
PspN4I	GGNNCC	4 cut(s)	185, 283, 468, 495
PstI	CTGCAG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	283, 495
RsaNI	GTAC	2 cut(s)	282, 494
SatI	GCNGC	2 cut(s)	108, 485
Sau3AI	GATC	3 cut(s)	289, 374, 573
ScrFI	CCNGG	2 cut(s)	181, 406
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	10, 147, 168, 189, 499, 532
SfaNI	GCATC	2 cut(s)	428, 568
SfcI	CTRYAG	2 cut(s)	198, 336
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	491
SsiI	CCGC	8 cut(s)	87, 108, 129, 195, 224, 273, 435, 491
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	179, 404
StyI	CCWWGG	2 cut(s)	453, 462
TaaI	ACNGT	3 cut(s)	139, 446, 591
TaqI	TCGA	3 cut(s)	325, 576, 606
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	4 cut(s)	157, 232, 458, 608
TscAI	CASTG	2 cut(s)	321, 451
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	175
TspGWI	ACGGA	2 cut(s)	163, 205
TspRI	CASTG	2 cut(s)	321, 451
XceI	RCATGY	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XmiI	GTMKAC	2 cut(s)	201, 320
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.