Rh3CG114500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004090
Physical Location & Seq
Forward (+)
9212901 .. 9216361
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG114500.1

Sequence Viewer

Length: 825 bp
ATGCAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTTACCGTCACCGTCACCGATAGCACCGCTGCCGCCGCCGCCTCCACTCAGTCTTCCACGGCCTCCTCCGGTACGATCAAACGCCAGAAGCCGACTCTTTCCTCCGTCGCCAAGACACTGCACGCCTCCTTGACTGCCAAAACCGACGCCGTTTCGGACCCTAGGAGATCCGCTCCTTCTACTCCTCTGGTTTCCTCCTCCGTTTCAGGTACCAGCGATTATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCATTAAAAAGGAAGACTACAGGGAAGGAAAATGATGTACAATTTAGTTGCCCTCGTACACCAAAGACCCGGAATGTTGGGAAAAAAACTAAACAAGATGGACATAACATCCAATCAGAGATGGACAGAACACCAATTGCTTCCACTCCTACACCTCGCATTTCATCATCAAGTTCTGATACCAGTAATCGTGAGATATACGAACCTCATTCAGTCTATACTCGAAGACAGACTGCATCAAAAAGAAATAGCAAAGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCCGGAATACTTGGGATAACTCAAATGAAGATGGATACAACAGTGTATCAAAGAAATCCAAGGCTTCTTGCAGAAAGAAGGTTGTACCAACTAAAAAAGAAGCTTCTGAGTACACTTCGCCAGACCTTGAAAAGCAGAGAGCTTACTTTGCAGAGCTTGATAAATATGAACTGCCAGTAGAGGAGGCTGAAGAATGGGAGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

29.91

Weight (kDa)

9.36

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sororin_C PF25220 248 - 266 5.7e-06 Sororin C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AccBSI CCGCTC 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 618
AciI CCGC 5 cut(s) 78, 84, 87, 90, 222
AclWI GGATC 2 cut(s) 213, 610
AcuI CTGAAG 4 cut(s) 44, 276, 632, 825
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 7 cut(s) 124, 262, 299, 354, 373, 702, 728
AgsI TTSAA 1 cut(s) 746
AluBI AGCT 6 cut(s) 8, 22, 590, 719, 758, 772
AluI AGCT 6 cut(s) 8, 22, 590, 719, 758, 772
AlwI GGATC 2 cut(s) 213, 610
Aor13HI TCCGGA 1 cut(s) 618
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 42, 80
Asp718I GGTACC 1 cut(s) 260
AspA2I CCTAGG 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 2 cut(s) 52, 58
AvaII GGWCC 1 cut(s) 208
AvrII CCTAGG 1 cut(s) 212
BaeI ACNNNNGTAYC 2 cut(s) 643, 676
BanI GGYRCC 1 cut(s) 260
BbsI GAAGAC 3 cut(s) 96, 335, 547
BbvI GCAGC 2 cut(s) 54, 67
BccI CCATC 3 cut(s) 407, 430, 641
BceAI ACGGC 3 cut(s) 126, 185, 330
BciVI GTATCC 1 cut(s) 644
BcnI CCSGG 1 cut(s) 385
BfaI CTAG 2 cut(s) 213, 594
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 644
BisI GCNGC 5 cut(s) 43, 81, 84, 87, 90
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 5 cut(s) 44, 82, 85, 88, 91
Bme1390I CCNGG 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 210, 262
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 560
BpiI GAAGAC 3 cut(s) 96, 335, 547
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpuMI CCSGG 1 cut(s) 385
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 108, 212, 675
BsaWI WCCGGW 2 cut(s) 119, 618
Bse1I ACTGG 2 cut(s) 498, 791
BseAI TCCGGA 1 cut(s) 618
BseDI CCNNGG 3 cut(s) 108, 212, 675
BseGI GGATG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 5, 113, 714
BseNI ACTGG 2 cut(s) 498, 791
BseRI GAGGAG 4 cut(s) 106, 225, 238, 812
BseXI GCAGC 2 cut(s) 54, 67
BsgI GTGCAG 2 cut(s) 155, 591
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 260
BsiSI CCGG 3 cut(s) 120, 385, 619
BsnI GGCC 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 618
Bsp1407I TGTACA 2 cut(s) 297, 352
Bsp143I GATC 3 cut(s) 126, 218, 615
BspACI CCGC 5 cut(s) 78, 84, 87, 90, 222
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 3 cut(s) 6, 112, 715
BspEI TCCGGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 210, 262
BspPI GGATC 2 cut(s) 213, 610
BspT107I GGYRCC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 224
BsrGI TGTACA 2 cut(s) 297, 352
BsrI ACTGG 2 cut(s) 498, 791
BssECI CCNNGG 3 cut(s) 108, 212, 675
BssMI GATC 3 cut(s) 126, 218, 615
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 2 cut(s) 212, 675
Bst4CI ACNGT 5 cut(s) 52, 58, 64, 302, 659
BstACI GRCGYC 1 cut(s) 198
BstAUI TGTACA 2 cut(s) 297, 352
BstC8I GCNNGC 2 cut(s) 6, 174
BstDEI CTNAG 3 cut(s) 14, 99, 723
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 423
BstKTI GATC 3 cut(s) 129, 221, 618
BstMBI GATC 3 cut(s) 126, 218, 615
BstMWI GCNNNNNNNGC 3 cut(s) 86, 89, 764
BstSCI CCNGG 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 54, 67
BstV2I GAAGAC 3 cut(s) 96, 335, 547
BstX2I RGATCY 2 cut(s) 218, 615
BstYI RGATCY 2 cut(s) 218, 615
BsuI GTATCC 1 cut(s) 644
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 5 cut(s) 11, 167, 300, 608, 664
Cac8I GCNNGC 2 cut(s) 6, 174
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 206
Csp6I GTAC 7 cut(s) 123, 261, 298, 353, 372, 701, 727
CviQI GTAC 7 cut(s) 123, 261, 298, 353, 372, 701, 727
DdeI CTNAG 3 cut(s) 14, 99, 723
DpnI GATC 3 cut(s) 128, 220, 617
DpnII GATC 3 cut(s) 126, 218, 615
Eco130I CCWWGG 2 cut(s) 212, 675
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 4 cut(s) 44, 276, 632, 825
EcoT14I CCWWGG 2 cut(s) 212, 675
ErhI CCWWGG 2 cut(s) 212, 675
FaiI YATR 5 cut(s) 273, 420, 514, 534, 783
Fnu4HI GCNGC 5 cut(s) 43, 81, 84, 87, 90
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 5 cut(s) 43, 81, 84, 87, 90
FspBI CTAG 2 cut(s) 213, 594
GluI GCNGC 5 cut(s) 43, 81, 84, 87, 90
HaeIII GGCC 1 cut(s) 113
HapII CCGG 3 cut(s) 120, 385, 619
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 198
HindIII AAGCTT 2 cut(s) 6, 717
HinfI GANTC 1 cut(s) 145
HpaII CCGG 3 cut(s) 120, 385, 619
HphI GGTGA 2 cut(s) 52, 58
Hpy166II GTNNAC 3 cut(s) 298, 374, 729
Hpy188I TCNGA 6 cut(s) 37, 208, 283, 433, 493, 724
Hpy188III TCNNGA 2 cut(s) 506, 619
Hpy8I GTNNAC 3 cut(s) 298, 374, 729
Hpy99I CGWCG 2 cut(s) 161, 200
HpyAV CCTTC 4 cut(s) 237, 297, 334, 688
HpyCH4III ACNGT 5 cut(s) 52, 58, 64, 302, 659
HpyCH4V TGCA 7 cut(s) 4, 42, 172, 551, 608, 687, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 89, 764
HpyF3I CTNAG 3 cut(s) 14, 99, 723
Hsp92I GRCGYC 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 618
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 126, 218, 615
LmnI GCTCC 2 cut(s) 229, 587
Lsp1109I GCAGC 2 cut(s) 54, 67
LweI GCATC 1 cut(s) 560
MaeI CTAG 2 cut(s) 213, 594
MaeIII GTNAC 3 cut(s) 52, 58, 64
MalI GATC 3 cut(s) 128, 220, 617
MbiI CCGCTC 1 cut(s) 224
MboI GATC 3 cut(s) 126, 218, 615
MboII GAAGA 7 cut(s) 96, 282, 340, 552, 625, 656, 818
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 2 cut(s) 218, 615
MluCI AATT 2 cut(s) 356, 450
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 798
MroI TCCGGA 1 cut(s) 618
MseI TTAA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 3 cut(s) 120, 385, 619
MspR9I CCNGG 1 cut(s) 385
MunI CAATTG 1 cut(s) 450
MwoI GCNNNNNNNGC 3 cut(s) 86, 89, 764
NciI CCSGG 1 cut(s) 385
NdeII GATC 3 cut(s) 126, 218, 615
NlaIV GGNNCC 2 cut(s) 210, 262
NmuCI GTSAC 2 cut(s) 58, 64
PkrI GCNGC 5 cut(s) 44, 82, 85, 88, 91
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 210, 262
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 2 cut(s) 218, 615
RsaI GTAC 7 cut(s) 124, 262, 299, 354, 373, 702, 728
RsaNI GTAC 7 cut(s) 123, 261, 298, 353, 372, 701, 727
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 5 cut(s) 43, 81, 84, 87, 90
Sau3AI GATC 3 cut(s) 126, 218, 615
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 385
SfaNI GCATC 1 cut(s) 560
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 208
Sse9I AATT 2 cut(s) 356, 450
SsiI CCGC 5 cut(s) 78, 84, 87, 90, 222
SspMI CTAG 2 cut(s) 213, 594
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 2 cut(s) 212, 675
TaaI ACNGT 5 cut(s) 52, 58, 64, 302, 659
TaqI TCGA 1 cut(s) 538
TasI AATT 2 cut(s) 356, 450
TatI WGTACW 3 cut(s) 297, 352, 726
TauI GCSGC 3 cut(s) 86, 89, 92
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 5 cut(s) 18, 174, 300, 615, 664
TseFI GTSAC 2 cut(s) 58, 64
TseI GCWGC 2 cut(s) 42, 80
Tsp45I GTSAC 2 cut(s) 58, 64
TspDTI ATGAA 3 cut(s) 468, 657, 798
TspGWI ACGGA 2 cut(s) 145, 241
TspRI CASTG 5 cut(s) 18, 174, 300, 615, 664
VpaK11BI GGWCC 1 cut(s) 208
XmaJI CCTAGG 1 cut(s) 212
XspI CTAG 2 cut(s) 213, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.