Rroxscaffold_4G00285570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004090
Physical Location & Seq
Reverse (-)
6844610 .. 6848534
3925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285570.1

Sequence Viewer

Length: 846 bp
ATGAACGGAGTTCGAAGAAGTAACAGAAAAACAGAAATGGAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTTACCGTCACCGATAGCGCCGCCGCCTCCACGCAGTCGTCCACGGCCTCCTCCGGTACGATCAAACGCCAGAACCCGACTCTTTCCTCCTTCGCCAAGACACTGCACGCCTCCTTGACTACCAAAACCGACGCCGTTTCGGACCCTAGGGGATCCACTCCTTCTACTCCTCTGGTTTCCTCCTCGGTTTCAGGTACCAGCGATTATGAGGTTTCAGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCACTAAAAAGGAAGACTACAGGGAAGGAAAATGATGTACAATTTAGTTGCCCTCGTACACCAAAGACCCGGAATGTTGGGAAAAAAACTAAACAAGATGGACATAACATCCAATCTGAGATGGACAGAACACCAATTGCTTCCGCTCCTACACCTCGCATTTCATCATCAAGTTCTGATACCAGTATTCATGAGGTATATGAACCTCATTCAGTCTATACTCGAAGACAGACTGCATCGAAAAGAAATAGCAAAGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCCGGAATACTAGGGATAACTCAAATGAAGATGCATACAACAGTCTATCAAAGAAATCCAAGGCTTCTTGCAGAAAGAAGGTTGTACCAACTAAAAAAGAAGCTTCCGAGTACACTTCACCAGACCTTGAAAAGCAGAGAGCTTATTTTGCAGAGCTTGATAAGTATGAACTGCCAGTAGAGGAGGCTGAAGAATGGGAGTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

30.82

Weight (kDa)

9.36

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sororin_C PF25220 255 - 273 5.9e-06 Sororin C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 482
AccIII TCCGGA 1 cut(s) 639
AciI CCGC 3 cut(s) 108, 111, 480
AclWI GGATC 3 cut(s) 234, 247, 631
AcuI CTGAAG 4 cut(s) 80, 297, 653, 846
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 7 cut(s) 145, 283, 320, 375, 394, 723, 749
AgsI TTSAA 1 cut(s) 767
AluBI AGCT 6 cut(s) 44, 58, 611, 740, 779, 793
AluI AGCT 6 cut(s) 44, 58, 611, 740, 779, 793
AlwI GGATC 3 cut(s) 234, 247, 631
Aor13HI TCCGGA 1 cut(s) 639
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 78
Asp718I GGTACC 1 cut(s) 281
AspA2I CCTAGG 1 cut(s) 233
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 88, 747
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 229
AvrII CCTAGG 1 cut(s) 233
BamHI GGATCC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 356, 568
BbvI GCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 428, 451
BceAI ACGGC 3 cut(s) 147, 206, 351
BcnI CCSGG 1 cut(s) 406
BfaI CTAG 3 cut(s) 234, 615, 648
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 3 cut(s) 79, 108, 111
BlnI CCTAGG 1 cut(s) 233
BlsI GCNGC 3 cut(s) 80, 109, 112
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 3 cut(s) 231, 241, 283
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 2 cut(s) 581, 658
BpiI GAAGAC 2 cut(s) 356, 568
Bpu14I TTCGAA 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 4 cut(s) 129, 233, 270, 696
BsaWI WCCGGW 2 cut(s) 140, 639
Bse1I ACTGG 2 cut(s) 519, 812
BseAI TCCGGA 1 cut(s) 639
BseDI CCNNGG 4 cut(s) 129, 233, 270, 696
BseGI GGATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 41, 444
BseNI ACTGG 2 cut(s) 519, 812
BseRI GAGGAG 4 cut(s) 127, 246, 259, 833
BseXI GCAGC 1 cut(s) 90
BsgI GTGCAG 2 cut(s) 176, 612
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 281
BsiSI CCGG 3 cut(s) 141, 406, 640
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 639
Bsp1407I TGTACA 2 cut(s) 318, 373
Bsp143I GATC 3 cut(s) 147, 239, 636
BspACI CCGC 3 cut(s) 108, 111, 480
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 42, 445
BspEI TCCGGA 1 cut(s) 639
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 231, 241, 283
BspPI GGATC 3 cut(s) 234, 247, 631
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 482
BsrGI TGTACA 2 cut(s) 318, 373
BsrI ACTGG 2 cut(s) 519, 812
BssECI CCNNGG 4 cut(s) 129, 233, 270, 696
BssMI GATC 3 cut(s) 147, 239, 636
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 2 cut(s) 233, 696
Bst4CI ACNGT 4 cut(s) 88, 94, 323, 680
BstACI GRCGYC 1 cut(s) 219
BstAUI TGTACA 2 cut(s) 318, 373
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 50, 453
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 444
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 3 cut(s) 150, 242, 639
BstMBI GATC 3 cut(s) 147, 239, 636
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 2 cut(s) 356, 568
BstX2I RGATCY 2 cut(s) 239, 636
BstYI RGATCY 2 cut(s) 239, 636
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 444
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 4 cut(s) 47, 188, 321, 629
Cac8I GCNNGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 229
CseI GACGC 1 cut(s) 227
Csp6I GTAC 7 cut(s) 144, 282, 319, 374, 393, 722, 748
CviAII CATG 1 cut(s) 527
CviQI GTAC 7 cut(s) 144, 282, 319, 374, 393, 722, 748
DdeI CTNAG 2 cut(s) 50, 453
DpnI GATC 3 cut(s) 149, 241, 638
DpnII GATC 3 cut(s) 147, 239, 636
Eco130I CCWWGG 2 cut(s) 233, 696
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 4 cut(s) 80, 297, 653, 846
EcoT14I CCWWGG 2 cut(s) 233, 696
EcoT22I ATGCAT 1 cut(s) 673
ErhI CCWWGG 2 cut(s) 233, 696
FaeI CATG 1 cut(s) 530
FaiI YATR 8 cut(s) 294, 441, 528, 535, 537, 555, 673, 804
FatI CATG 1 cut(s) 526
Fnu4HI GCNGC 3 cut(s) 79, 108, 111
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 3 cut(s) 79, 108, 111
FspBI CTAG 3 cut(s) 234, 615, 648
GlaI GCGC 1 cut(s) 106
GluI GCNGC 3 cut(s) 79, 108, 111
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 134
HapII CCGG 3 cut(s) 141, 406, 640
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 530
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HindIII AAGCTT 2 cut(s) 42, 738
HinfI GANTC 1 cut(s) 166
HpaII CCGG 3 cut(s) 141, 406, 640
HphI GGTGA 2 cut(s) 88, 747
Hpy166II GTNNAC 4 cut(s) 129, 319, 395, 750
Hpy188I TCNGA 6 cut(s) 73, 229, 304, 454, 514, 745
Hpy188III TCNNGA 2 cut(s) 527, 640
Hpy8I GTNNAC 4 cut(s) 129, 319, 395, 750
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 5 cut(s) 187, 258, 318, 355, 709
HpyCH4III ACNGT 4 cut(s) 88, 94, 323, 680
HpyCH4V TGCA 7 cut(s) 78, 193, 572, 629, 671, 708, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 2 cut(s) 50, 453
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 530
HspAI GCGC 1 cut(s) 105
Kpn2I TCCGGA 1 cut(s) 639
KpnI GGTACC 1 cut(s) 285
Kzo9I GATC 3 cut(s) 147, 239, 636
LmnI GCTCC 2 cut(s) 487, 608
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 2 cut(s) 581, 658
MaeI CTAG 3 cut(s) 234, 615, 648
MaeIII GTNAC 3 cut(s) 20, 88, 94
MalI GATC 3 cut(s) 149, 241, 638
MbiI CCGCTC 1 cut(s) 482
MboI GATC 3 cut(s) 147, 239, 636
MboII GAAGA 7 cut(s) 27, 303, 361, 573, 646, 677, 839
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 2 cut(s) 239, 636
MluCI AATT 2 cut(s) 377, 471
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 673
MroI TCCGGA 1 cut(s) 639
MspI CCGG 3 cut(s) 141, 406, 640
MspR9I CCNGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 785
NciI CCSGG 1 cut(s) 406
NdeII GATC 3 cut(s) 147, 239, 636
NlaIII CATG 1 cut(s) 530
NlaIV GGNNCC 3 cut(s) 231, 241, 283
NmuCI GTSAC 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 673
NspV TTCGAA 1 cut(s) 13
PagI TCATGA 1 cut(s) 526
PkrI GCNGC 3 cut(s) 80, 109, 112
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 231, 241, 283
PspPI GGNCC 1 cut(s) 229
PsuI RGATCY 2 cut(s) 239, 636
RsaI GTAC 7 cut(s) 145, 283, 320, 375, 394, 723, 749
RsaNI GTAC 7 cut(s) 144, 282, 319, 374, 393, 722, 748
SatI GCNGC 3 cut(s) 79, 108, 111
Sau3AI GATC 3 cut(s) 147, 239, 636
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 406
SfaNI GCATC 2 cut(s) 581, 658
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 229
Sse9I AATT 2 cut(s) 377, 471
SsiI CCGC 3 cut(s) 108, 111, 480
SspMI CTAG 3 cut(s) 234, 615, 648
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 2 cut(s) 233, 696
TaaI ACNGT 4 cut(s) 88, 94, 323, 680
TaqI TCGA 3 cut(s) 13, 559, 575
TasI AATT 2 cut(s) 377, 471
TatI WGTACW 3 cut(s) 318, 373, 747
TauI GCSGC 2 cut(s) 110, 113
TscAI CASTG 4 cut(s) 54, 195, 321, 636
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 6 cut(s) 17, 489, 515, 552, 678, 819
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 4 cut(s) 54, 195, 321, 636
VpaK11BI GGWCC 1 cut(s) 229
XmaJI CCTAGG 1 cut(s) 233
XspI CTAG 3 cut(s) 234, 615, 648
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.