Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005396

Physical Location & Seq

Genomic Coordinates Forward (+)

20729943 .. 20730471

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAGAATATCAGGGACTCTATCGACGAGCTGAAGCAGTCCGTGAGTGCCATGAGCAATTTGGGGGGTGCGAATATGGAATACCAGTTGGATGACATAAAGACTTGGGTCAGCGCTGCCCTAACAGAGGATGATACTTGTACGGATGGGTTTGATGAGGTAAAGGTGAGCTTGGATGTGAAGAACGCCGCCATCAGTAAGATCATTATCAATATTGCTAGGTTGGCTAGTAACGCCTTGTCTCTCACCAACAGCCTCAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

89

Amino Acids

9.58

Weight (kDa)

4.21

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	2 - 82	2.5e-17	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25250 AT5G51520
fragaria_vesca	FvH4_7g27830 FvH4_7g27840
malus_domestica	MD00G1105100.v1.1 MD07G1255600.v1.1
prunus_persica	Prupe.2G279800_v2.0.a1
pyrus_communis	pycom07g22870
rosa_chinensis	RchiOBHm_Chr1g0374701 RchiOBHm_Chr1g0374711
rosa_laevigata	RLG00000026720 RLG00000026721
rosa_multiflora	Rmu_sc0004947.1_g000017 Rmu_sc0004947.1_g000018
rosa_roxburghii	Rroxscaffold_4G00283290 Rroxscaffold_4G00283300
rosa_rugosa	Rorug01G0384300 Rorug01G0384400 Rorug01G0384500
rosa_samantha	Rh1AG396000 Rh1AG396100 Rh1BG360100 Rh1BG360200 Rh1CG373500 Rh1CG373600 Rh1DG391100 Rh1DG391200
rosa_wichuraiana	Rw1G035110 Rw1G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	142
AfeI	AGCGCT	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	31, 171
AluI	AGCT	2 cut(s)	31, 171
Alw26I	GTCTC	1 cut(s)	246
Aor51HI	AGCGCT	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	178, 238
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	140, 200
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	219, 228
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	2 cut(s)	117, 189
BlsI	GCNGC	2 cut(s)	118, 190
BoxI	GACNNNNGTC	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	206
BseGI	GGATG	4 cut(s)	97, 136, 151, 181
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	4 cut(s)	97, 136, 151, 181
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 233
BstPAI	GACNNNNGTC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	103
BtsCI	GGATG	4 cut(s)	97, 136, 151, 181
CfoI	GCGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	4 cut(s)	31, 171, 227, 255
CviKI_1	RGCY	4 cut(s)	31, 171, 227, 255
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eco47III	AGCGCT	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	55
FaiI	YATR	3 cut(s)	53, 77, 98
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	117, 189
FokI	GGATG	4 cut(s)	104, 143, 158, 188
Fsp4HI	GCNGC	2 cut(s)	117, 189
FspBI	CTAG	2 cut(s)	219, 228
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	2 cut(s)	117, 189
HaeII	RGCGCY	1 cut(s)	117
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	178, 238
Hpy99I	CGWCG	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 233
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	1 cut(s)	98
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	219, 228
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	193
MluCI	AATT	2 cut(s)	58, 259
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	121, 151, 266
MwoI	GCNNNNNNNGC	2 cut(s)	224, 233
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	118, 190
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PshAI	GACNNNNGTC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SatI	GCNGC	2 cut(s)	117, 189
Sau3AI	GATC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	11
SetI	ASST	5 cut(s)	33, 162, 168, 173, 224
Sse9I	AATT	2 cut(s)	58, 259
SsiI	CCGC	1 cut(s)	189
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	2 cut(s)	219, 228
TaqI	TCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	58, 259
TauI	GCSGC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	116
TspGWI	ACGGA	2 cut(s)	31, 158
XagI	CCTNNNNNAGG	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XspI	CTAG	2 cut(s)	219, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.