Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005396

Physical Location & Seq

Genomic Coordinates Forward (+)

27940209 .. 27941321

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G279800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGAGCTCAAAATTTCACAACCCCAACCTCAAATTCACACAATGCTCTCACATTTCTCCTCCCAATTCTCCTATTGATCTTCATGCCAAACATGCACACAACATTGGCAACTTCTTCTTCTTCTCAGACCTACAAAACCTACGTCAAAACTGCCTGCAACACAACCACATACCCACTCATTTGCTACAAATCTCTCTCCTCATACGCCTCCAAAGTCAAATCCGATCCTCAAAAGCTTTGTACCTATGCCCTCTCCGTTACCCTAAAAGCAGCAAAAAACGCCTCTTCCGTAGTTTCAAAGCTTTATAAAAATACAGGATTAACCCCATCCGAGAAAGGGGTGGTCAAGGATTGTATAGAGAATATTAAGGACTCCATTGACGAGCTCAAACAGTCGGTGAGTTCCATGAGCAATTTGGGGGTTTCGGGTTCCGACGTGCAATTACAATTGGATGATATAAAGACTTGGGTGAGCGCCGTCATCACGGATGACGCTACTTGCACGGATGGATTTGATGGTGTGAAGGTAAGCGCCGCGGTTAAGACCGCCATCAGGAACAGCATTGTGAATGCTGCTAGGTTGGCTAGCAATGCTCTTTCTCTCATAGACAGCCTCATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

209

Amino Acids

22.26

Weight (kDa)

8.73

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25250 AT5G51520
fragaria_vesca	FvH4_7g27830 FvH4_7g27840
malus_domestica	MD00G1105100.v1.1 MD07G1255600.v1.1
prunus_persica	Prupe.2G279800_v2.0.a1
pyrus_communis	pycom07g22870
rosa_chinensis	RchiOBHm_Chr1g0374701 RchiOBHm_Chr1g0374711
rosa_laevigata	RLG00000026720 RLG00000026721
rosa_multiflora	Rmu_sc0004947.1_g000017 Rmu_sc0004947.1_g000018
rosa_roxburghii	Rroxscaffold_4G00283290 Rroxscaffold_4G00283300
rosa_rugosa	Rorug01G0384300 Rorug01G0384400 Rorug01G0384500
rosa_samantha	Rh1AG396000 Rh1AG396100 Rh1BG360100 Rh1BG360200 Rh1CG373500 Rh1CG373600 Rh1DG391100 Rh1DG391200
rosa_wichuraiana	Rw1G035110 Rw1G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccII	CGCG	1 cut(s)	539
AciI	CCGC	3 cut(s)	537, 539, 549
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	13, 34
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	339, 555
AgsI	TTSAA	1 cut(s)	300
AjiI	CACGTC	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	4 cut(s)	8, 238, 304, 388
AluI	AGCT	4 cut(s)	8, 238, 304, 388
Alw21I	GWGCWC	2 cut(s)	10, 390
AlwI	GGATC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	272, 575
ApoI	RAATTY	2 cut(s)	13, 34
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspLEI	GCGC	2 cut(s)	479, 536
AsuHPI	GGTGA	2 cut(s)	412, 484
AsuNHI	GCTAGC	1 cut(s)	587
BanII	GRGCYC	2 cut(s)	10, 390
Bbv12I	GWGCWC	2 cut(s)	10, 390
BbvI	GCAGC	2 cut(s)	284, 562
BccI	CCATC	4 cut(s)	337, 503, 512, 560
BceAI	ACGGC	1 cut(s)	464
BfaI	CTAG	3 cut(s)	579, 588, 625
BfoI	RGCGCY	2 cut(s)	480, 537
BisI	GCNGC	3 cut(s)	273, 537, 576
BlsI	GCNGC	3 cut(s)	274, 538, 577
BmgBI	CACGTC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	433
BmtI	GCTAGC	1 cut(s)	591
BsaJI	CCNNGG	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 555
Bse3DI	GCAATG	1 cut(s)	598
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	4 cut(s)	329, 460, 496, 514
BseLI	CCNNNNNNNGG	2 cut(s)	339, 555
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	50, 190
BseXI	GCAGC	2 cut(s)	284, 562
Bsh1236I	CGCG	1 cut(s)	539
BsiHKAI	GWGCWC	2 cut(s)	10, 390
BslI	CCNNNNNNNGG	2 cut(s)	339, 555
BsmI	GAATGC	1 cut(s)	577
Bsp1286I	GDGCHC	2 cut(s)	10, 390
Bsp143I	GATC	2 cut(s)	78, 226
BspACI	CCGC	3 cut(s)	537, 539, 549
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	1 cut(s)	433
BspOI	GCTAGC	1 cut(s)	591
BspPI	GGATC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	2 cut(s)	78, 226
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	157, 589
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	4 cut(s)	329, 460, 496, 514
BstFNI	CGCG	1 cut(s)	539
BstH2I	RGCGCY	2 cut(s)	480, 537
BstHHI	GCGC	2 cut(s)	479, 536
BstKTI	GATC	2 cut(s)	81, 229
BstMBI	GATC	2 cut(s)	78, 226
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 281, 584, 593
BstNSI	RCATGY	1 cut(s)	97
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	284, 562
BtgI	CCRYGG	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	4 cut(s)	329, 460, 496, 514
Cac8I	GCNNGC	2 cut(s)	157, 589
CfoI	GCGC	2 cut(s)	479, 536
Cfr42I	CCGCGG	1 cut(s)	540
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	3 cut(s)	85, 94, 409
CviJI	RGCY	6 cut(s)	8, 238, 304, 388, 587, 615
CviKI_1	RGCY	6 cut(s)	8, 238, 304, 388, 587, 615
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	80, 228
DpnII	GATC	2 cut(s)	78, 226
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Ecl136II	GAGCTC	2 cut(s)	8, 388
Eco24I	GRGCYC	2 cut(s)	10, 390
Eco53kI	GAGCTC	2 cut(s)	8, 388
EcoICRI	GAGCTC	2 cut(s)	8, 388
EcoT38I	GRGCYC	2 cut(s)	10, 390
FaeI	CATG	3 cut(s)	88, 97, 412
FatI	CATG	3 cut(s)	84, 93, 408
Fnu4HI	GCNGC	3 cut(s)	273, 537, 576
FokI	GGATG	4 cut(s)	316, 467, 503, 521
FriOI	GRGCYC	2 cut(s)	10, 390
Fsp4HI	GCNGC	3 cut(s)	273, 537, 576
FspBI	CTAG	3 cut(s)	579, 588, 625
GlaI	GCGC	2 cut(s)	478, 535
GluI	GCNGC	3 cut(s)	273, 537, 576
HaeII	RGCGCY	2 cut(s)	480, 537
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	2 cut(s)	479, 536
Hin1II	CATG	3 cut(s)	88, 97, 412
Hin6I	GCGC	2 cut(s)	477, 534
HinP1I	GCGC	2 cut(s)	477, 534
HindIII	AAGCTT	2 cut(s)	236, 302
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	2 cut(s)	412, 484
Hpy188I	TCNGA	4 cut(s)	129, 226, 334, 436
Hpy188III	TCNNGA	1 cut(s)	556
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	144, 438
HpyCH4V	TGCA	4 cut(s)	97, 159, 442, 504
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 281, 584, 593
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	144, 438
Hsp92II	CATG	3 cut(s)	88, 97, 412
HspAI	GCGC	2 cut(s)	477, 534
KspI	CCGCGG	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	78, 226
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	3 cut(s)	169, 303, 541
Lsp1109I	GCAGC	2 cut(s)	284, 562
MaeI	CTAG	3 cut(s)	579, 588, 625
MaeII	ACGT	2 cut(s)	144, 438
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	80, 228
MboI	GATC	2 cut(s)	78, 226
MboII	GAAGA	5 cut(s)	73, 108, 111, 114, 279
MfeI	CAATTG	1 cut(s)	449
MhlI	GDGCHC	2 cut(s)	10, 390
MluCI	AATT	6 cut(s)	13, 34, 66, 415, 443, 449
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	8 cut(s)	40, 71, 211, 220, 240, 263, 295, 626
MseI	TTAA	3 cut(s)	323, 369, 543
MspA1I	CMGCKG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	577
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	4 cut(s)	94, 281, 584, 593
NdeII	GATC	2 cut(s)	78, 226
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	3 cut(s)	88, 97, 412
NlaIV	GGNNCC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	274, 538, 577
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	2 cut(s)	10, 390
PspN4I	GGNNCC	1 cut(s)	433
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SacI	GAGCTC	2 cut(s)	10, 390
SacII	CCGCGG	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	323, 369, 543
SatI	GCNGC	3 cut(s)	273, 537, 576
Sau3AI	GATC	2 cut(s)	78, 226
SchI	GAGTC	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	10, 390
Sfr303I	CCGCGG	1 cut(s)	540
SgrBI	CCGCGG	1 cut(s)	540
Sse9I	AATT	6 cut(s)	13, 34, 66, 415, 443, 449
SsiI	CCGC	3 cut(s)	537, 539, 549
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	3 cut(s)	579, 588, 625
SstI	GAGCTC	2 cut(s)	10, 390
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	2 cut(s)	147, 441
TasI	AATT	6 cut(s)	13, 34, 66, 415, 443, 449
TauI	GCSGC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	323, 369, 543
Tru9I	TTAA	3 cut(s)	323, 369, 543
TseI	GCWGC	2 cut(s)	272, 575
TspDTI	ATGAA	1 cut(s)	73
TspGWI	ACGGA	4 cut(s)	247, 280, 503, 521
XapI	RAATTY	2 cut(s)	13, 34
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	3 cut(s)	579, 588, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.