Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005396

Physical Location & Seq

Genomic Coordinates Reverse (-)

49627571 .. 49628610

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0384400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGACTTCCCGACATAGTGAGCCAGAATCTTCGGATTGACCCAGAAGCACAATATGGTGCCCTTTTTAGGATGCCAGCACGGAGATTAGCTCATATTTTCCACCTTCTTAGCAGCACCAAAACTGATACTGTTTGGATATCAATAATGAACGCGGAACGGGTGAGATTCGTCATGGAAAGAGGCAATGATAATGTGATTGATATCTCGAATGCTGAAGGCAGTGATGATAGTGATGATGATGATATCCCGAGGGTTCAAGTCGAATGCAATCACAATGCTGATCATGTCCAACCTGAAAAAGCAACCATTATACAAAAGGAGTATGAAGTGGAGAGGCCCTTGTGCATGATGTGTGTGCATAAATACATCAACATGATCACCAAGAAATTCCCAGAGGCGAGTCAAGTGACAATCTACATGGGGCCGGGTGTGCCTACTGTTATTGAGCATAGAGTTCCGGGGATGGATTTCATAGGGCGGAAGGCTCCCTTGGCTAAACACAAATTTCATCCAAGGCGAGAGAGGGCTGAAGTGATGGATGAAGGTTGCATGGATAACAGTGGAGATGAAATGGTTCCTGAAGATGAAGATGGAGATGGAGATGAAATGGCCCCAGTAGCTGGAGGTGGAGATGAAATGGATCCGGAAGGTGGAGGTGGAGATGAAATAGCTCCAGAAGCTGGAGATGGAATGAATCCGGAAGGTGGAGATGAAATGGCTCCAGAAGCTGGAGATGGAGGTGGAGAGGAAGTTGACAGAGTAATTGTCATTAACCGAAAGCGAGTGAGGTCTGAAGCGATGGATAACAATGGAGATGAAATGGATCCTCAAGATGAATTGATGGACGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

285

Amino Acids

31.58

Weight (kDa)

4.42

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25250 AT5G51520
fragaria_vesca	FvH4_7g27830 FvH4_7g27840
malus_domestica	MD00G1105100.v1.1 MD07G1255600.v1.1
prunus_persica	Prupe.2G279800_v2.0.a1
pyrus_communis	pycom07g22870
rosa_chinensis	RchiOBHm_Chr1g0374701 RchiOBHm_Chr1g0374711
rosa_laevigata	RLG00000026720 RLG00000026721
rosa_multiflora	Rmu_sc0004947.1_g000017 Rmu_sc0004947.1_g000018
rosa_roxburghii	Rroxscaffold_4G00283290 Rroxscaffold_4G00283300
rosa_rugosa	Rorug01G0384300 Rorug01G0384400 Rorug01G0384500
rosa_samantha	Rh1AG396000 Rh1AG396100 Rh1BG360100 Rh1BG360200 Rh1CG373500 Rh1CG373600 Rh1DG391100 Rh1DG391200
rosa_wichuraiana	Rw1G035110 Rw1G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	3 cut(s)	623, 683, 731
AccII	CGCG	1 cut(s)	155
AccIII	TCCGGA	2 cut(s)	646, 700
AciI	CCGC	2 cut(s)	155, 481
AclWI	GGATC	4 cut(s)	638, 651, 821, 834
AcsI	RAATTY	2 cut(s)	389, 506
AcuI	CTGAAG	4 cut(s)	237, 552, 603, 816
AfiI	CCNNNNNNNGG	6 cut(s)	69, 623, 653, 683, 707, 731
AgsI	TTSAA	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	5 cut(s)	92, 623, 674, 683, 731
AluI	AGCT	5 cut(s)	92, 623, 674, 683, 731
AlwI	GGATC	4 cut(s)	638, 651, 821, 834
AlwNI	CAGNNNCTG	3 cut(s)	623, 683, 731
Ama87I	CYCGRG	1 cut(s)	250
Aor13HI	TCCGGA	2 cut(s)	646, 700
AoxI	GGCC	3 cut(s)	338, 425, 612
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	2 cut(s)	389, 506
Asp700I	GAANNNNTTC	1 cut(s)	576
AspS9I	GGNCC	3 cut(s)	339, 425, 613
AsuC2I	CCSGG	2 cut(s)	429, 462
AsuHPI	GGTGA	2 cut(s)	175, 373
AvaI	CYCGRG	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	64
BamHI	GGATCC	2 cut(s)	643, 826
BanI	GGYRCC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	8 cut(s)	460, 532, 587, 593, 683, 731, 796, 838
BclI	TGATCA	2 cut(s)	283, 378
BcnI	CCSGG	2 cut(s)	429, 462
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	2 cut(s)	429, 462
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	3 cut(s)	339, 425, 613
BmiI	GGNNCC	8 cut(s)	61, 426, 489, 579, 615, 645, 723, 828
BmrFI	CCNGG	2 cut(s)	429, 462
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
BpmI	CTGGAG	5 cut(s)	645, 660, 705, 708, 753
BpuEI	CTTGAG	1 cut(s)	816
BpuMI	CCSGG	2 cut(s)	429, 462
BsaBI	GATNNNNATC	1 cut(s)	203
BsaJI	CCNNGG	4 cut(s)	251, 461, 492, 515
BsaWI	WCCGGW	2 cut(s)	646, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	6 cut(s)	69, 623, 653, 683, 707, 731
Bse1I	ACTGG	1 cut(s)	617
Bse3DI	GCAATG	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	203
BseAI	TCCGGA	2 cut(s)	646, 700
BseDI	CCNNGG	4 cut(s)	251, 461, 492, 515
BseGI	GGATG	4 cut(s)	78, 471, 511, 547
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	6 cut(s)	69, 623, 653, 683, 707, 731
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	843
BseNI	ACTGG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	340, 427, 614
BshNI	GGYRCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	4 cut(s)	428, 461, 647, 701
BslI	CCNNNNNNNGG	6 cut(s)	69, 623, 653, 683, 707, 731
BsmI	GAATGC	2 cut(s)	217, 272
BsnI	GGCC	3 cut(s)	340, 427, 614
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	2 cut(s)	646, 700
Bsp143I	GATC	4 cut(s)	283, 378, 643, 826
BspACI	CCGC	2 cut(s)	155, 481
BspANI	GGCC	3 cut(s)	340, 427, 614
BspCNI	CTCAG	1 cut(s)	844
BspEI	TCCGGA	2 cut(s)	646, 700
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	8 cut(s)	61, 426, 489, 579, 615, 645, 723, 828
BspPI	GGATC	4 cut(s)	638, 651, 821, 834
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	4 cut(s)	251, 461, 492, 515
BssMI	GATC	4 cut(s)	283, 378, 643, 826
BssT1I	CCWWGG	2 cut(s)	492, 515
Bst4CI	ACNGT	3 cut(s)	133, 442, 563
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	110, 852
BstF5I	GGATG	4 cut(s)	78, 471, 511, 547
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	4 cut(s)	286, 381, 646, 829
BstMBI	GATC	4 cut(s)	283, 378, 643, 826
BstMWI	GCNNNNNNNGC	5 cut(s)	433, 494, 620, 680, 728
BstSCI	CCNGG	2 cut(s)	427, 460
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	126
BstX2I	RGATCY	2 cut(s)	643, 826
BstYI	RGATCY	2 cut(s)	643, 826
BsuRI	GGCC	3 cut(s)	340, 427, 614
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	4 cut(s)	78, 471, 511, 547
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	229, 568
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	3 cut(s)	623, 683, 731
Cfr13I	GGNCC	3 cut(s)	339, 425, 613
CviAII	CATG	6 cut(s)	175, 287, 349, 376, 421, 553
DdeI	CTNAG	2 cut(s)	110, 852
DpnI	GATC	4 cut(s)	285, 380, 645, 828
DpnII	GATC	4 cut(s)	283, 378, 643, 826
EciI	GGCGGA	1 cut(s)	496
Eco130I	CCWWGG	2 cut(s)	492, 515
Eco32I	GATATC	3 cut(s)	141, 205, 247
Eco57I	CTGAAG	4 cut(s)	237, 552, 603, 816
Eco88I	CYCGRG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRV	GATATC	3 cut(s)	141, 205, 247
EcoT14I	CCWWGG	2 cut(s)	492, 515
ErhI	CCWWGG	2 cut(s)	492, 515
FaeI	CATG	6 cut(s)	178, 290, 352, 379, 424, 556
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	6 cut(s)	174, 286, 348, 375, 420, 552
FbaI	TGATCA	2 cut(s)	283, 378
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	4 cut(s)	85, 478, 498, 554
Fsp4HI	GCNGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	115
GsuI	CTGGAG	5 cut(s)	645, 660, 705, 708, 753
HaeIII	GGCC	3 cut(s)	340, 427, 614
HapII	CCGG	4 cut(s)	428, 461, 647, 701
Hin1II	CATG	6 cut(s)	178, 290, 352, 379, 424, 556
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	4 cut(s)	28, 168, 403, 697
HpaII	CCGG	4 cut(s)	428, 461, 647, 701
HphI	GGTGA	2 cut(s)	175, 373
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	2 cut(s)	36, 796
Hpy188III	TCNNGA	9 cut(s)	11, 208, 250, 581, 647, 677, 701, 725, 833
Hpy8I	GTNNAC	1 cut(s)	757
HpyAV	CCTTC	6 cut(s)	116, 212, 478, 539, 644, 698
HpyCH4III	ACNGT	3 cut(s)	133, 442, 563
HpyCH4V	TGCA	4 cut(s)	270, 348, 361, 552
HpyF10VI	GCNNNNNNNGC	5 cut(s)	433, 494, 620, 680, 728
HpyF3I	CTNAG	2 cut(s)	110, 852
Hsp92II	CATG	6 cut(s)	178, 290, 352, 379, 424, 556
Kpn2I	TCCGGA	2 cut(s)	646, 700
Ksp22I	TGATCA	2 cut(s)	283, 378
Kzo9I	GATC	4 cut(s)	283, 378, 643, 826
LmnI	GCTCC	3 cut(s)	493, 679, 727
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	4 cut(s)	285, 380, 645, 828
MboI	GATC	4 cut(s)	283, 378, 643, 826
MboII	GAAGA	3 cut(s)	23, 596, 602
MflI	RGATCY	2 cut(s)	643, 826
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	4 cut(s)	389, 506, 765, 839
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	316
MroI	TCCGGA	2 cut(s)	646, 700
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	1 cut(s)	774
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	4 cut(s)	428, 461, 647, 701
MspR9I	CCNGG	2 cut(s)	429, 462
Mva1269I	GAATGC	2 cut(s)	217, 272
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	5 cut(s)	433, 494, 620, 680, 728
NciI	CCSGG	2 cut(s)	429, 462
NdeII	GATC	4 cut(s)	283, 378, 643, 826
NlaIII	CATG	6 cut(s)	178, 290, 352, 379, 424, 556
NlaIV	GGNNCC	8 cut(s)	61, 426, 489, 579, 615, 645, 723, 828
NmuCI	GTSAC	1 cut(s)	409
PctI	GAATGC	2 cut(s)	217, 272
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	28, 168, 697
PflMI	CCANNNNNTGG	3 cut(s)	623, 683, 731
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PspN4I	GGNNCC	8 cut(s)	61, 426, 489, 579, 615, 645, 723, 828
PspPI	GGNCC	3 cut(s)	339, 425, 613
PstNI	CAGNNNCTG	3 cut(s)	623, 683, 731
PsuI	RGATCY	2 cut(s)	643, 826
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	4 cut(s)	283, 378, 643, 826
Sau96I	GGNCC	3 cut(s)	339, 425, 613
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	429, 462
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	831
SmoI	CTYRAG	1 cut(s)	831
Sse9I	AATT	4 cut(s)	389, 506, 765, 839
SsiI	CCGC	2 cut(s)	155, 481
StyD4I	CCNGG	2 cut(s)	427, 460
StyI	CCWWGG	2 cut(s)	492, 515
TaaI	ACNGT	3 cut(s)	133, 442, 563
TaqI	TCGA	2 cut(s)	209, 264
TasI	AATT	4 cut(s)	389, 506, 765, 839
TfiI	GAWTC	3 cut(s)	28, 168, 697
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TscAI	CASTG	2 cut(s)	229, 568
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	409
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	2 cut(s)	229, 568
Van91I	CCANNNNNTGG	3 cut(s)	623, 683, 731
XapI	RAATTY	2 cut(s)	389, 506
XmnI	GAANNNNTTC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.