Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005396

Physical Location & Seq

Genomic Coordinates Reverse (-)

5247739 .. 5251811

Gene Structure 4073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCAGCCTCCTCTTCAACCCCAGAACCTCACAACTCCTATCTCCTAAGAGCTTGCAACTCAACCACATACCCACAAATTTGCTACAAGTCCCTCTTCTCCTACGCCTCCACAATCAACTCAAACCCTCAGAAGCTCTGCAGCTACGCCCTCTCCGTCGCCCTTAAAGCCGCCCGCAACGTCTCCTCCACCGTGACGAAGCTGTCCAAAAGGAATGGATTGACACACTCAGAGGCTTTGGTCGTCAAGGATTGCATAGAGAATATCAGGGACTCCATTGACGAACTCAAGCAGTCCGTGAGTGCCATGAGCAATTTGGGGTTGGGTGACATAAAGACTTGGGTCAGCGCTGCCCTAACAGACGATGATACTTGTATGGAAGGGTTTGATGAGGTGAAGGTGAGCTTGGATGTGAAGAACGCCATCAGTAAGAGCATCGTCAATATTGCGAGATTGGCTACTAGGCCAGAGTTACGAAACCTCACTGGCTCTCAGTCCTCTCCCGTCTCCCCCCCCCCCACCATGTCCCTAACCGGCTCACCCACTCACGTGACTATCGTCACACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

189

Amino Acids

20.31

Weight (kDa)

8.6

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	17 - 152	1.7e-31	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25250 AT5G51520
fragaria_vesca	FvH4_7g27830 FvH4_7g27840
malus_domestica	MD00G1105100.v1.1 MD07G1255600.v1.1
prunus_persica	Prupe.2G279800_v2.0.a1
pyrus_communis	pycom07g22870
rosa_chinensis	RchiOBHm_Chr1g0374701 RchiOBHm_Chr1g0374711
rosa_laevigata	RLG00000026720 RLG00000026721
rosa_multiflora	Rmu_sc0004947.1_g000017 Rmu_sc0004947.1_g000018
rosa_roxburghii	Rroxscaffold_4G00283290 Rroxscaffold_4G00283300
rosa_rugosa	Rorug01G0384300 Rorug01G0384400 Rorug01G0384500
rosa_samantha	Rh1AG396000 Rh1AG396100 Rh1BG360100 Rh1BG360200 Rh1CG373500 Rh1CG373600 Rh1DG391100 Rh1DG391200
rosa_wichuraiana	Rw1G035110 Rw1G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AciI	CCGC	2 cut(s)	171, 175
AcsI	RAATTY	1 cut(s)	78
AcvI	CACGTG	1 cut(s)	550
AdeI	CACNNNGTG	1 cut(s)	567
AfeI	AGCGCT	1 cut(s)	349
AgsI	TTSAA	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	5 cut(s)	53, 136, 144, 202, 405
AluI	AGCT	5 cut(s)	53, 136, 144, 202, 405
Alw26I	GTCTC	2 cut(s)	187, 511
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	3 cut(s)	5, 141, 350
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	350
AsuHPI	GGTGA	4 cut(s)	338, 406, 412, 531
BbrPI	CACGTG	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	17, 153, 337
BccI	CCATC	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	187, 511
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	351
BisI	GCNGC	4 cut(s)	6, 142, 171, 351
BlsI	GCNGC	4 cut(s)	7, 143, 172, 352
BmsI	GCATC	1 cut(s)	444
BoxI	GACNNNNGTC	2 cut(s)	341, 557
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	550
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 170, 200
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	490
BseGI	GGATG	1 cut(s)	415
BseMII	CTCAG	3 cut(s)	143, 243, 506
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	17, 153, 337
BshFI	GGCC	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	3 cut(s)	76, 284, 511
BsmAI	GTCTC	2 cut(s)	187, 511
BsmBI	CGTCTC	2 cut(s)	187, 511
BsmFI	GGGAC	3 cut(s)	76, 284, 511
BsnI	GGCC	1 cut(s)	466
BspACI	CCGC	2 cut(s)	171, 175
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	3 cut(s)	142, 242, 505
BspMAI	CTGCAG	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	533
Bst4CI	ACNGT	2 cut(s)	193, 567
Bst6I	CTCTTC	2 cut(s)	19, 101
BstBAI	YACGTR	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	55, 175
BstDEI	CTNAG	4 cut(s)	47, 129, 229, 492
BstF5I	GGATG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstMAI	GTCTC	2 cut(s)	187, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 455
BstPAI	GACNNNNGTC	2 cut(s)	341, 557
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	17, 153, 337
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	55, 175
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	533
CviAII	CATG	2 cut(s)	307, 523
DdeI	CTNAG	4 cut(s)	47, 129, 229, 492
DraIII	CACNNNGTG	1 cut(s)	567
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	19, 101
EarI	CTCTTC	2 cut(s)	19, 101
Eco47III	AGCGCT	1 cut(s)	349
Eco72I	CACGTG	1 cut(s)	550
Esp3I	CGTCTC	2 cut(s)	187, 511
FaeI	CATG	2 cut(s)	310, 526
FaiI	YATR	6 cut(s)	70, 257, 308, 332, 377, 524
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 389, 421
FaqI	GGGAC	3 cut(s)	76, 284, 511
FatI	CATG	2 cut(s)	306, 522
FauI	CCCGC	1 cut(s)	182
Fnu4HI	GCNGC	4 cut(s)	6, 142, 171, 351
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	4 cut(s)	6, 142, 171, 351
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	4 cut(s)	6, 142, 171, 351
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	1 cut(s)	534
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	310, 526
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	4 cut(s)	338, 406, 412, 531
Hpy188I	TCNGA	2 cut(s)	132, 232
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	374, 391
HpyCH4III	ACNGT	2 cut(s)	193, 567
HpyCH4IV	ACGT	2 cut(s)	180, 549
HpyCH4V	TGCA	3 cut(s)	57, 141, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 455
HpyF3I	CTNAG	4 cut(s)	47, 129, 229, 492
HpySE526I	ACGT	2 cut(s)	180, 549
Hsp92II	CATG	2 cut(s)	310, 526
HspAI	GCGC	1 cut(s)	348
LpnPI	CCDG	5 cut(s)	36, 253, 471, 480, 547
Lsp1109I	GCAGC	3 cut(s)	17, 153, 337
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	2 cut(s)	180, 549
MaeIII	GTNAC	5 cut(s)	193, 326, 471, 550, 559
MboII	GAAGA	3 cut(s)	6, 88, 427
MluCI	AATT	2 cut(s)	78, 313
MlyI	GAGTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	548
MspI	CCGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	167, 455
NlaIII	CATG	2 cut(s)	310, 526
NmuCI	GTSAC	4 cut(s)	193, 326, 550, 559
OliI	CACNNNNGTG	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 555
PkrI	GCNGC	4 cut(s)	7, 143, 172, 352
PleI	GAGTC	1 cut(s)	266
PmaCI	CACGTG	1 cut(s)	550
PmlI	CACGTG	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	550
PshAI	GACNNNNGTC	2 cut(s)	341, 557
PspCI	CACGTG	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	6, 142, 171, 351
SchI	GAGTC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	78, 313
SsiI	CCGC	2 cut(s)	171, 175
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	193, 567
TaiI	ACGT	2 cut(s)	183, 552
TasI	AATT	2 cut(s)	78, 313
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	4 cut(s)	193, 326, 550, 559
TseI	GCWGC	3 cut(s)	5, 141, 350
Tsp45I	GTSAC	4 cut(s)	193, 326, 550, 559
TspGWI	ACGGA	2 cut(s)	145, 286
TspRI	CASTG	1 cut(s)	490
XapI	RAATTY	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.