Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004947.1

Orthogroup ID

OG0005396

Physical Location & Seq

Genomic Coordinates Forward (+)

72716 .. 73291

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004947.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgggaactcccacatttctctccactcttctcctattcatcctcttcatcaacacgaccacggctacttcttcttcgagccaaacctacaaaacctacgtcaaaacagcctgcaactccaccacgtacccagaaatttgctacaaggctctctcctcctacgccagatccgtcaaatcaaaccctcagaagctctgcaactatgccctctccgtaaccctaaaagccgcgaaaaaagcctcttccacggtgtcgaagctgtccaataagaaaggattgacgaaagcagaggccggggtagtggaggattgcatagagaacattgaggattccgtcgatgagctcaaacaggcggtgactgccatgaaaaatttgggagatgcggatgtccaacttcatttggatgacataaagacttgggttagcgcttcgctgacggatgaggacacctgtacggatggattcgatgagcagaaggtaagtgcggcggtgaagaacaccattaataagagcattctcactgttgctagattggctagcaatgctttatctctcatcaacaacctcagttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

191

Amino Acids

20.62

Weight (kDa)

7.55

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25250 AT5G51520
fragaria_vesca	FvH4_7g27830 FvH4_7g27840
malus_domestica	MD00G1105100.v1.1 MD07G1255600.v1.1
prunus_persica	Prupe.2G279800_v2.0.a1
pyrus_communis	pycom07g22870
rosa_chinensis	RchiOBHm_Chr1g0374701 RchiOBHm_Chr1g0374711
rosa_laevigata	RLG00000026720 RLG00000026721
rosa_multiflora	Rmu_sc0004947.1_g000017 Rmu_sc0004947.1_g000018
rosa_roxburghii	Rroxscaffold_4G00283290 Rroxscaffold_4G00283300
rosa_rugosa	Rorug01G0384300 Rorug01G0384400 Rorug01G0384500
rosa_samantha	Rh1AG396000 Rh1AG396100 Rh1BG360100 Rh1BG360200 Rh1CG373500 Rh1CG373600 Rh1DG391100 Rh1DG391200
rosa_wichuraiana	Rw1G035110 Rw1G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AciI	CCGC	5 cut(s)	228, 353, 383, 485, 488
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	135, 370
AfaI	GTAC	2 cut(s)	128, 454
AfeI	AGCGCT	1 cut(s)	427
AluBI	AGCT	3 cut(s)	193, 259, 343
AluI	AGCT	3 cut(s)	193, 259, 343
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	162
Aor51HI	AGCGCT	1 cut(s)	427
AoxI	GGCC	1 cut(s)	291
ApoI	RAATTY	2 cut(s)	135, 370
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	367, 502
AsuNHI	GCTAGC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	345
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	295
BfaI	CTAG	3 cut(s)	528, 537, 574
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	2 cut(s)	228, 486
BlsI	GCNGC	2 cut(s)	229, 487
Bme1390I	CCNGG	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	370
BmtI	GCTAGC	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	60, 246, 294
Bse3DI	GCAATG	1 cut(s)	547
BseDI	CCNNGG	3 cut(s)	60, 246, 294
BseGI	GGATG	5 cut(s)	39, 391, 409, 445, 463
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	5 cut(s)	228, 353, 383, 485, 488
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	230
BspOI	GCTAGC	1 cut(s)	540
BspPI	GGATC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	547
BssECI	CCNNGG	3 cut(s)	60, 246, 294
BssMI	GATC	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	250, 523
Bst6I	CTCTTC	3 cut(s)	33, 50, 247
BstBAI	YACGTR	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	112, 538
BstDEI	CTNAG	2 cut(s)	186, 566
BstDSI	CCRYGG	2 cut(s)	60, 246
BstF5I	GGATG	5 cut(s)	39, 391, 409, 445, 463
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 359, 533, 542
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	2 cut(s)	60, 246
BtsCI	GGATG	5 cut(s)	39, 391, 409, 445, 463
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	112, 538
CfoI	GCGC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	127, 453
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	2 cut(s)	127, 453
DdeI	CTNAG	2 cut(s)	186, 566
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eam1104I	CTCTTC	3 cut(s)	33, 50, 247
EarI	CTCTTC	3 cut(s)	33, 50, 247
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco47III	AGCGCT	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	367
FaiI	YATR	4 cut(s)	204, 314, 365, 410
FatI	CATG	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	228, 486
FokI	GGATG	5 cut(s)	26, 398, 416, 452, 470
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	228, 486
FspBI	CTAG	3 cut(s)	528, 537, 574
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	228, 486
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	329, 462
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	367, 502
Hpy188I	TCNGA	1 cut(s)	189
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	250, 523
HpyCH4IV	ACGT	2 cut(s)	99, 125
HpyCH4V	TGCA	3 cut(s)	114, 198, 312
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 359, 533, 542
HpyF3I	CTNAG	2 cut(s)	186, 566
HpySE526I	ACGT	2 cut(s)	99, 125
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	167
LpnPI	CCDG	6 cut(s)	124, 144, 178, 307, 335, 463
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	3 cut(s)	528, 537, 574
MaeII	ACGT	2 cut(s)	99, 125
MaeIII	GTNAC	3 cut(s)	214, 355, 569
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	6 cut(s)	20, 37, 63, 66, 234, 505
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	2 cut(s)	135, 370
MmeI	TCCRAC	1 cut(s)	415
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	513
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	236, 359, 533, 542
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	167
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	513
PfeI	GAWTC	2 cut(s)	329, 462
PkrI	GCNGC	2 cut(s)	229, 487
Ppu21I	YACGTR	1 cut(s)	126
PshBI	ATTAAT	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	128, 454
RsaNI	GTAC	2 cut(s)	127, 453
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	2 cut(s)	228, 486
Sau3AI	GATC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	2 cut(s)	135, 370
SsiI	CCGC	5 cut(s)	228, 353, 383, 485, 488
SspMI	CTAG	3 cut(s)	528, 537, 574
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	2 cut(s)	250, 523
TaiI	ACGT	2 cut(s)	102, 128
TaqI	TCGA	4 cut(s)	77, 254, 336, 465
TasI	AATT	2 cut(s)	135, 370
TauI	GCSGC	2 cut(s)	230, 488
TfiI	GAWTC	2 cut(s)	329, 462
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	4 cut(s)	28, 37, 380, 386
TspGWI	ACGGA	5 cut(s)	160, 202, 322, 452, 470
TspRI	CASTG	1 cut(s)	526
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	2 cut(s)	135, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XspI	CTAG	3 cut(s)	528, 537, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.