Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004947.1

Orthogroup ID

OG0005396

Physical Location & Seq

Genomic Coordinates Forward (+)

74518 .. 75036

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004947.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggcagcctcctcttcaaccccagaacctcacaactcctatctcctaagagcttgcaattcaaccacatacccacaaatttgctacaagtccctcttctcctacgcctccacaatcaactcaaaccctcagaagctctgcagcttcgccctctctgtcgcccttaaagccgcccgcaacgcctcctccaccgtgacgaagctgtccaagaggaatggattgacacactcagaggctttggtcgtcaaggattgcatagagaatatcagggactccattgacgagctcaagcagtccgtgagtgccatgagcaacttgggaggtgccaatatggaataccagttgggtgacataaagacttgggtcagcgctgccctaacagacgatgatacttgtatggaagggtttgatgaggtgaaggtgagcttggatgtgaagaacgccatcagtaagagcatcgtcaatatttctagattggctagtaatgccctgtctctcatcaacagcctcaattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

172

Amino Acids

18.58

Weight (kDa)

6.71

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25250 AT5G51520
fragaria_vesca	FvH4_7g27830 FvH4_7g27840
malus_domestica	MD00G1105100.v1.1 MD07G1255600.v1.1
prunus_persica	Prupe.2G279800_v2.0.a1
pyrus_communis	pycom07g22870
rosa_chinensis	RchiOBHm_Chr1g0374701 RchiOBHm_Chr1g0374711
rosa_laevigata	RLG00000026720 RLG00000026721
rosa_multiflora	Rmu_sc0004947.1_g000017 Rmu_sc0004947.1_g000018
rosa_roxburghii	Rroxscaffold_4G00283290 Rroxscaffold_4G00283300
rosa_rugosa	Rorug01G0384300 Rorug01G0384400 Rorug01G0384500
rosa_samantha	Rh1AG396000 Rh1AG396100 Rh1BG360100 Rh1BG360200 Rh1CG373500 Rh1CG373600 Rh1DG391100 Rh1DG391200
rosa_wichuraiana	Rw1G035110 Rw1G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	323
AciI	CCGC	2 cut(s)	171, 175
AcsI	RAATTY	1 cut(s)	78
AfeI	AGCGCT	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	18, 63
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	6 cut(s)	53, 136, 144, 202, 286, 426
AluI	AGCT	6 cut(s)	53, 136, 144, 202, 286, 426
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	498
Aor51HI	AGCGCT	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	5, 141, 371
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	359, 427, 433
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	17, 153, 358
BccI	CCATC	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	471, 480
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	372
BisI	GCNGC	4 cut(s)	6, 142, 171, 372
BlsI	GCNGC	4 cut(s)	7, 143, 172, 373
BmiI	GGNNCC	1 cut(s)	325
BmsI	GCATC	1 cut(s)	465
BoxI	GACNNNNGTC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bse1I	ACTGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	143, 243
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	17, 153, 358
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	76, 284
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	2 cut(s)	76, 284
Bsp1286I	GDGCHC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	171, 175
BspCNI	CTCAG	2 cut(s)	142, 242
BspLI	GGNNCC	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	19, 101
BstC8I	GCNNGC	2 cut(s)	55, 175
BstDEI	CTNAG	3 cut(s)	47, 129, 229
BstF5I	GGATG	1 cut(s)	436
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstMAI	GTCTC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 179, 485
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	17, 153, 358
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	55, 175
CfoI	GCGC	1 cut(s)	371
CviAII	CATG	1 cut(s)	307
DdeI	CTNAG	3 cut(s)	47, 129, 229
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	19, 101
EarI	CTCTTC	2 cut(s)	19, 101
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco47III	AGCGCT	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	310
FaiI	YATR	6 cut(s)	70, 257, 308, 332, 353, 398
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 410, 442
FaqI	GGGAC	2 cut(s)	76, 284
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	182
Fnu4HI	GCNGC	4 cut(s)	6, 142, 171, 372
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	6, 142, 171, 372
FspBI	CTAG	2 cut(s)	471, 480
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	4 cut(s)	6, 142, 171, 372
HaeII	RGCGCY	1 cut(s)	372
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	1 cut(s)	272
HphI	GGTGA	3 cut(s)	359, 427, 433
Hpy188I	TCNGA	2 cut(s)	132, 232
Hpy188III	TCNNGA	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	395, 412
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	57, 141, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 179, 485
HpyF3I	CTNAG	3 cut(s)	47, 129, 229
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	369
LpnPI	CCDG	4 cut(s)	36, 253, 353, 503
Lsp1109I	GCAGC	3 cut(s)	17, 153, 358
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	471, 480
MaeIII	GTNAC	2 cut(s)	193, 347
MboII	GAAGA	3 cut(s)	6, 88, 448
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	58, 78, 511
MlyI	GAGTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	167, 179, 485
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	2 cut(s)	193, 347
PkrI	GCNGC	4 cut(s)	7, 143, 172, 373
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PshAI	GACNNNNGTC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	6, 142, 171, 372
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	58, 78, 511
SsiI	CCGC	2 cut(s)	171, 175
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	471, 480
SstI	GAGCTC	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	193
TasI	AATT	3 cut(s)	58, 78, 511
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	193, 347
TseI	GCWGC	3 cut(s)	5, 141, 371
Tsp45I	GTSAC	2 cut(s)	193, 347
TspGWI	ACGGA	1 cut(s)	286
XapI	RAATTY	1 cut(s)	78
XbaI	TCTAGA	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	2 cut(s)	471, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.