Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005396

Physical Location & Seq

Genomic Coordinates Forward (+)

62952696 .. 62953566

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAGCTCAGACTCTCATATCTCATGTCACTCTTCTCCCATTTATCATTATCATGATAATCATGATAAACATGCACACAACCATGGCAGCGTCCTCTTCAACCCCAGAACCTCACAACTCCTATCTCCTAAGAGCTTGCAATTCAACCACATACCCACAAATTTGCTACAAGTCCCTCTTCTCCTACGCCTCCACAATCAACTCAAACCCTCAGAAGCTCTGCAGCTACGCCCTCTCTGTCGCCCTTAAAGCCGCCCGCAACGCCTCCTCCACCGTGACGAAGCTGTCCAAGAGGTATGGATTGACACACTCAGAGGCTTTGGTCGTCAAGGATTGCATAGAGAATATCAGGGACTCCATTGACGAGCTCAAGCAGTCCGTGAGTGCCATGAGCAACTTGGGAGGTGCCAATATGGAATACCAGTTGGGTGACATAAAGACTTGGGTCAGCGCTGCCCTAACAGACGATGATACTTGTATGGAAGGGTTTGATGAGGTGAAGGTGAGCTTGGATGTGAAGAACGCCATCAGTAAGAGCATCGTCAATATTGCTAGATTGGCTAGTAATGCCCTGTCTCTCATCAACAGCCTCAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

200

Amino Acids

21.77

Weight (kDa)

6.88

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	45 - 194	3.5e-35	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25250 AT5G51520
fragaria_vesca	FvH4_7g27830 FvH4_7g27840
malus_domestica	MD00G1105100.v1.1 MD07G1255600.v1.1
prunus_persica	Prupe.2G279800_v2.0.a1
pyrus_communis	pycom07g22870
rosa_chinensis	RchiOBHm_Chr1g0374701 RchiOBHm_Chr1g0374711
rosa_laevigata	RLG00000026720 RLG00000026721
rosa_multiflora	Rmu_sc0004947.1_g000017 Rmu_sc0004947.1_g000018
rosa_roxburghii	Rroxscaffold_4G00283290 Rroxscaffold_4G00283300
rosa_rugosa	Rorug01G0384300 Rorug01G0384400 Rorug01G0384500
rosa_samantha	Rh1AG396000 Rh1AG396100 Rh1BG360100 Rh1BG360200 Rh1CG373500 Rh1CG373600 Rh1DG391100 Rh1DG391200
rosa_wichuraiana	Rw1G035110 Rw1G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	2 cut(s)	255, 259
AcsI	RAATTY	1 cut(s)	162
AfeI	AGCGCT	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	102, 147
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	7 cut(s)	8, 137, 220, 228, 286, 370, 510
AluI	AGCT	7 cut(s)	8, 137, 220, 228, 286, 370, 510
Alw21I	GWGCWC	2 cut(s)	10, 372
Alw26I	GTCTC	1 cut(s)	582
Aor51HI	AGCGCT	1 cut(s)	454
ApeKI	GCWGC	3 cut(s)	89, 225, 455
ApoI	RAATTY	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	443, 511, 517
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	10, 372
Bbv12I	GWGCWC	2 cut(s)	10, 372
BbvI	GCAGC	3 cut(s)	101, 237, 442
BccI	CCATC	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	2 cut(s)	555, 564
BfmI	CTRYAG	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	456
BisI	GCNGC	4 cut(s)	90, 226, 255, 456
BlsI	GCNGC	4 cut(s)	91, 227, 256, 457
BmiI	GGNNCC	1 cut(s)	409
BmsI	GCATC	1 cut(s)	549
BoxI	GACNNNNGTC	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse1I	ACTGG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	520
BseMII	CTCAG	3 cut(s)	23, 227, 327
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	101, 237, 442
BshNI	GGYRCC	1 cut(s)	407
BsiHKAI	GWGCWC	2 cut(s)	10, 372
BslFI	GGGAC	2 cut(s)	160, 368
BsmAI	GTCTC	1 cut(s)	582
BsmFI	GGGAC	2 cut(s)	160, 368
Bsp1286I	GDGCHC	2 cut(s)	10, 372
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	2 cut(s)	255, 259
BspCNI	CTCAG	3 cut(s)	22, 226, 326
BspHI	TCATGA	2 cut(s)	54, 63
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	3 cut(s)	39, 103, 185
BstC8I	GCNNGC	2 cut(s)	139, 259
BstDEI	CTNAG	4 cut(s)	9, 131, 213, 313
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstMAI	GTCTC	1 cut(s)	582
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 263, 560, 569
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	101, 237, 442
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	139, 259
CciI	TCATGA	2 cut(s)	54, 63
CfoI	GCGC	1 cut(s)	455
CseI	GACGC	1 cut(s)	81
CviAII	CATG	6 cut(s)	26, 55, 64, 73, 85, 391
DdeI	CTNAG	4 cut(s)	9, 131, 213, 313
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	3 cut(s)	39, 103, 185
EarI	CTCTTC	3 cut(s)	39, 103, 185
Ecl136II	GAGCTC	2 cut(s)	8, 370
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	10, 372
Eco47III	AGCGCT	1 cut(s)	454
Eco53kI	GAGCTC	2 cut(s)	8, 370
EcoICRI	GAGCTC	2 cut(s)	8, 370
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	2 cut(s)	10, 372
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	6 cut(s)	29, 58, 67, 76, 88, 394
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 494, 526
FaqI	GGGAC	2 cut(s)	160, 368
FatI	CATG	6 cut(s)	25, 54, 63, 72, 84, 390
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	90, 226, 255, 456
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	2 cut(s)	10, 372
Fsp4HI	GCNGC	4 cut(s)	90, 226, 255, 456
FspBI	CTAG	2 cut(s)	555, 564
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	4 cut(s)	90, 226, 255, 456
HaeII	RGCGCY	1 cut(s)	456
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	6 cut(s)	29, 58, 67, 76, 88, 394
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	2 cut(s)	13, 356
HphI	GGTGA	3 cut(s)	443, 511, 517
Hpy188I	TCNGA	3 cut(s)	12, 216, 316
Hpy188III	TCNNGA	2 cut(s)	55, 64
HpyAV	CCTTC	2 cut(s)	479, 496
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	76, 141, 225, 339
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 263, 560, 569
HpyF3I	CTNAG	4 cut(s)	9, 131, 213, 313
Hsp92II	CATG	6 cut(s)	29, 58, 67, 76, 88, 394
HspAI	GCGC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	4 cut(s)	120, 337, 437, 587
Lsp1109I	GCAGC	3 cut(s)	101, 237, 442
LweI	GCATC	1 cut(s)	549
MaeI	CTAG	2 cut(s)	555, 564
MaeIII	GTNAC	3 cut(s)	28, 277, 431
MboII	GAAGA	4 cut(s)	26, 90, 172, 532
MhlI	GDGCHC	2 cut(s)	10, 372
MluCI	AATT	3 cut(s)	142, 162, 595
MlyI	GAGTC	2 cut(s)	7, 350
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	2 cut(s)	53, 83
MwoI	GCNNNNNNNGC	4 cut(s)	251, 263, 560, 569
NcoI	CCATGG	1 cut(s)	84
NlaIII	CATG	6 cut(s)	29, 58, 67, 76, 88, 394
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	3 cut(s)	28, 277, 431
NspI	RCATGY	1 cut(s)	76
PagI	TCATGA	2 cut(s)	54, 63
PkrI	GCNGC	4 cut(s)	91, 227, 256, 457
PleI	GAGTC	2 cut(s)	7, 350
PpsI	GAGTC	2 cut(s)	7, 350
PshAI	GACNNNNGTC	1 cut(s)	446
Psp124BI	GAGCTC	2 cut(s)	10, 372
PspN4I	GGNNCC	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	53, 83
SacI	GAGCTC	2 cut(s)	10, 372
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	4 cut(s)	90, 226, 255, 456
SchI	GAGTC	2 cut(s)	7, 350
SduI	GDGCHC	2 cut(s)	10, 372
SfaNI	GCATC	1 cut(s)	549
SfcI	CTRYAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	53, 83
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	3 cut(s)	142, 162, 595
SsiI	CCGC	2 cut(s)	255, 259
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	2 cut(s)	555, 564
SstI	GAGCTC	2 cut(s)	10, 372
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	3 cut(s)	142, 162, 595
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	3 cut(s)	28, 277, 431
TseI	GCWGC	3 cut(s)	89, 225, 455
Tsp45I	GTSAC	3 cut(s)	28, 277, 431
TspGWI	ACGGA	1 cut(s)	370
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XspI	CTAG	2 cut(s)	555, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.