Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

22243383 .. 22245942

Gene Structure 2560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCAAAACCATTGGAGAGATACCAAAAACTTGCGCTGAAAGAGTGTTTAGGATCAATTCACAGATACCCTTTAGTATGTAAAGAGCTCAGCTTAATTCTCAGAGGCGCTTATAGAAAAGTGCCCAAGAATCTCCAATCTCTTATCTTCCAAGACACCCTCACCGCCTTTCGTCTCCTTCCTGAAATGAAGACAGGCAGTGCTGTCTCGGCAGCTCATCTCCTCCTCCAGAGTGTTGAGGCCACATTGCCAAAGCAAAAGAAGAACTTGGCTGTTGCAGAATATAAGAATGCAATGGTTGTTCACAAGAGGCGCACTAAAGCCCACCAAGAAGAGAATCTTGCACATCTGCCACAAGATGTTCTTGTTCACGTGTTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGACTAGTATGCTGGTCATGGAATTTTGCGGCAAGTGATAATCGGCTGTGGCAGAGGCAATACGCTACATTCTTTAGGGATTCTTACAATGACTTAAATATCAAGGAACAGCATACCAGTAGACAGGTTCAAGATAAAAGTGATACGCTGTTTTGGAGAAAAGCCTTCAAAATAGCATATAAAGGGAATAGTTCATCAGAGAAATTAAAATCCAGTAGGGGATACTGTAGACACTGCAAGACAATTGTTTGGCTCGATAACATGAAATGTTTCAATGAACACATTGGACTAAATACTGAAATTCAGAAAATTGACCCTGTATTACCTAGTCAGGTGGTTGACTACTTGTTGGAAGGTTCTATATCACTCAAATCTTCTTCAGAGAGCGATAGCGACAGTGATTCAGAAGTAGGGTTGTTTTTCTCCAGGTTATGGGCCTATGCCTATCAAAGACCCTTGACTAGACCTGAAGATAAGCCTTCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

300

Amino Acids

34.44

Weight (kDa)

9.23

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	6 - 104	1.7e-41	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	114 - 158	3.9e-16	F-box-like
F-box	PF00646	115 - 155	1e-09	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	843
AccI	GTMKAC	2 cut(s)	532, 640
AciI	CCGC	2 cut(s)	165, 440
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	433, 711
AcuI	CTGAAG	2 cut(s)	774, 900
AcvI	CACGTG	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	843
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	395, 542, 580, 685
AhlI	ACTAGT	1 cut(s)	415
AjnI	CCWGG	2 cut(s)	384, 836
AluBI	AGCT	3 cut(s)	88, 93, 215
AluI	AGCT	3 cut(s)	88, 93, 215
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	3 cut(s)	179, 211, 409
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	2 cut(s)	240, 846
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	433, 711
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	3 cut(s)	37, 110, 315
AspS9I	GGNCC	1 cut(s)	846
AsuHPI	GGTGA	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	90
BbrPI	CACGTG	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	386, 838
BciVI	GTATCC	1 cut(s)	626
BcoDI	GTCTC	3 cut(s)	179, 211, 409
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	3 cut(s)	416, 738, 873
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	626
BisI	GCNGC	2 cut(s)	213, 441
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	214, 442
Bme1390I	CCNGG	2 cut(s)	386, 838
BmgT120I	GGNCC	1 cut(s)	846
BmrFI	CCNGG	2 cut(s)	386, 838
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	2 cut(s)	212, 820
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	843
Bse1I	ACTGG	2 cut(s)	528, 624
Bse3DI	GCAATG	2 cut(s)	245, 300
BseBI	CCWGG	2 cut(s)	386, 838
BseLI	CCNNNNNNNGG	1 cut(s)	843
BseMI	GCAATG	2 cut(s)	245, 300
BseMII	CTCAG	2 cut(s)	103, 115
BseNI	ACTGG	2 cut(s)	528, 624
BseRI	GAGGAG	2 cut(s)	212, 215
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	2 cut(s)	242, 848
BsiHKAI	GWGCWC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	843
BsmAI	GTCTC	3 cut(s)	179, 211, 409
BsmBI	CGTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	242, 848
Bsp1286I	GDGCHC	2 cut(s)	90, 126
Bsp143I	GATC	1 cut(s)	53
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	2 cut(s)	165, 440
BspANI	GGCC	2 cut(s)	242, 848
BspCNI	CTCAG	2 cut(s)	102, 114
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	245, 300
BsrI	ACTGG	2 cut(s)	528, 624
BssMI	GATC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	386, 838
Bst4CI	ACNGT	2 cut(s)	638, 809
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	89, 101
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	3 cut(s)	37, 110, 315
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	3 cut(s)	179, 211, 409
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	2 cut(s)	386, 838
BstSCI	CCNGG	2 cut(s)	384, 836
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	242, 848
BtsI	GCAGTG	2 cut(s)	205, 643
BtsIMutI	CAGTG	3 cut(s)	205, 643, 814
CfoI	GCGC	3 cut(s)	37, 110, 315
Cfr13I	GGNCC	1 cut(s)	846
CviAII	CATG	2 cut(s)	429, 673
DdeI	CTNAG	2 cut(s)	89, 101
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	774, 900
Eco72I	CACGTG	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	384, 836
EcoT38I	GRGCYC	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	432, 676
FalI	AAGNNNNNCTT	6 cut(s)	251, 283, 324, 356, 348, 380
FatI	CATG	2 cut(s)	428, 672
FblI	GTMKAC	2 cut(s)	532, 640
Fnu4HI	GCNGC	2 cut(s)	213, 441
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	213, 441
FspBI	CTAG	3 cut(s)	416, 738, 873
GlaI	GCGC	3 cut(s)	36, 109, 314
GluI	GCNGC	2 cut(s)	213, 441
GsuI	CTGGAG	2 cut(s)	212, 820
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	242, 848
HhaI	GCGC	3 cut(s)	37, 110, 315
Hin1II	CATG	2 cut(s)	432, 676
Hin6I	GCGC	3 cut(s)	35, 108, 313
HinP1I	GCGC	3 cut(s)	35, 108, 313
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	4 cut(s)	130, 337, 491, 812
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	5 cut(s)	304, 370, 533, 641, 751
Hpy188I	TCNGA	6 cut(s)	104, 610, 717, 793, 817, 895
Hpy188III	TCNNGA	3 cut(s)	182, 229, 542
Hpy8I	GTNNAC	5 cut(s)	304, 370, 533, 641, 751
HpyAV	CCTTC	4 cut(s)	188, 586, 758, 900
HpyCH4III	ACNGT	2 cut(s)	638, 809
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	4 cut(s)	278, 293, 344, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	89, 101
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	432, 676
HspAI	GCGC	3 cut(s)	35, 108, 313
Kzo9I	GATC	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	3 cut(s)	416, 738, 873
MaeII	ACGT	1 cut(s)	372
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	7 cut(s)	139, 202, 274, 344, 777, 780, 893
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	2 cut(s)	90, 126
MluCI	AATT	7 cut(s)	57, 96, 433, 614, 654, 711, 720
MmeI	TCCRAC	2 cut(s)	391, 741
MnlI	CCTC	7 cut(s)	98, 170, 232, 233, 236, 303, 459
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	4 cut(s)	95, 506, 617, 898
MspR9I	CCNGG	2 cut(s)	386, 838
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	2 cut(s)	386, 838
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	432, 676
NmeAIII	GCCGAG	1 cut(s)	188
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	4 cut(s)	130, 337, 491, 812
PflMI	CCANNNNNTGG	1 cut(s)	843
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	214, 442
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	384, 836
PspCI	CACGTG	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	384, 836
PspPI	GGNCC	1 cut(s)	846
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	4 cut(s)	95, 506, 617, 898
SatI	GCNGC	2 cut(s)	213, 441
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	846
ScrFI	CCNGG	2 cut(s)	386, 838
SduI	GDGCHC	2 cut(s)	90, 126
SfcI	CTRYAG	1 cut(s)	637
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	7 cut(s)	57, 96, 433, 614, 654, 711, 720
SsiI	CCGC	2 cut(s)	165, 440
SspMI	CTAG	3 cut(s)	416, 738, 873
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	384, 836
TaaI	ACNGT	2 cut(s)	638, 809
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	666
TasI	AATT	7 cut(s)	57, 96, 433, 614, 654, 711, 720
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	4 cut(s)	130, 337, 491, 812
Tru1I	TTAA	4 cut(s)	95, 506, 617, 898
Tru9I	TTAA	4 cut(s)	95, 506, 617, 898
TscAI	CASTG	3 cut(s)	205, 650, 814
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	203, 594, 689, 702
TspRI	CASTG	3 cut(s)	205, 650, 814
Van91I	CCANNNNNTGG	1 cut(s)	843
XapI	RAATTY	2 cut(s)	433, 711
XmiI	GTMKAC	2 cut(s)	532, 640
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	3 cut(s)	416, 738, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.